`ama-qvalues [options]`

Read an AMA output file and output each sequence name, *p*-value
and *q*-value. At the end of file, the value of pi_0 (number of
sequences not showing significant binding to motif) is shown, unless
there are fewer than 100 p-values in the input.

Reads standard input expecting an AMA output file.

Writes to standard output.

For each sequence in the input, outputs the sequence name, the
*p*-value of the sequence and the *q*-value (minimum false
discovery rate).

If there are more than 99 sequences with *p*-values in the input
then it provides an estimate of the number of sequences that contain the
motif, otherwise known as the pi_0.

No optional arguments.