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List only potential regulatory links that meet the selected filter criteria below.

To filter on "Gene_ID", "Gene_Name", "TSS_ID", "TSS_Locus" or "RE_Locus", you can enter any Javascript regular expression pattern. See here for documentation on Javascript regular expression patterns.

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Sort the potential regulatory links according to the criterion selected in the menu below. Sorting is applied after filtering where possible (the exception being the "Top" filter) so the filters applied will affect the sort.

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For further information on how to interpret these results please access http://localhost:8080/meme_5.0.4/doc/cismapper-output-format.html.
To get a copy of the MEME software please access http://meme-suite.org.

If you use CisMapper in your research, please cite the following paper:
Timothy O'Connor, Mikael Bodén, Timothy L. Bailey, "CisMapper: Predicting regulatory interactions from transcription factor ChIP-seq data", Nucleic Acids Research, 45:e19, 2017. [Abstract and Full Text]

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Results

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Filters 
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Columns to display

Input Files

Locus File

File Name

Annotation File

File Name File Type Number of TSSes with Links Number of Genes with Links

Other Settings

RNA Source
Tissues
Histone Root
Histone Names
Maximum Link Distances
Expression Root
Expression File Type
Transcript Types
Minimum Feature Count
Minimum Maximum Expression
Maximum HTML Score
Job Description
CisMapper version
(Release date: )
Command line summary