******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.0 (Release date: Wed Nov 25 19:19:29 2020 -0800) For further information on how to interpret please access http://meme-suite.org. To get a copy of the MEME Suite software please access http://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.256 C 0.244 G 0.244 T 0.256 MOTIF 1-RGCCACACCCWNNBY STREME-1 letter-probability matrix: alength= 4 w= 15 nsites= 325 P= 2.3e-009 0.413723 0.130724 0.317318 0.138235 0.261341 0.049866 0.676240 0.012554 0.077862 0.831729 0.034317 0.056092 0.000115 0.999661 0.000109 0.000115 0.690501 0.287506 0.015658 0.006334 0.003225 0.996551 0.000109 0.000115 0.788197 0.000109 0.208469 0.003225 0.009444 0.987222 0.000109 0.003225 0.000115 0.990331 0.003219 0.006334 0.000115 0.987219 0.000109 0.012557 0.479027 0.127615 0.009439 0.383920 0.227134 0.276891 0.292429 0.203546 0.280005 0.262632 0.186696 0.270667 0.158719 0.405680 0.208465 0.227136 0.189816 0.390134 0.143162 0.276888 MOTIF 2-CTCCACCCAK STREME-2 letter-probability matrix: alength= 4 w= 10 nsites= 43 P= 3.0e-002 0.000985 0.917050 0.000938 0.081028 0.000985 0.054277 0.000938 0.943800 0.012040 0.932698 0.000938 0.054323 0.000985 0.997093 0.000938 0.000985 0.943800 0.000938 0.054277 0.000985 0.000985 0.917050 0.000938 0.081028 0.000985 0.970435 0.027596 0.000985 0.000985 0.997093 0.000938 0.000985 0.970481 0.000938 0.027596 0.000985 0.000985 0.080981 0.345478 0.572556 MOTIF 3-RGAGATAAGRVD STREME-3 letter-probability matrix: alength= 4 w= 12 nsites= 336 P= 4.5e-002 0.310705 0.013961 0.476235 0.199099 0.229819 0.161173 0.476225 0.132783 0.725081 0.059957 0.000162 0.214800 0.000170 0.000162 0.999498 0.000170 0.999506 0.000162 0.000162 0.000170 0.000170 0.013961 0.000162 0.985707 0.999506 0.000162 0.000162 0.000170 0.994907 0.000162 0.004762 0.000170 0.144676 0.082955 0.728895 0.043474 0.411153 0.135467 0.412596 0.040784 0.390040 0.254299 0.245096 0.110565 0.276965 0.142762 0.223999 0.356273 MOTIF 4-CCCKCCCTYC STREME-4 letter-probability matrix: alength= 4 w= 10 nsites= 378 P= 4.7e-002 0.121215 0.751342 0.060711 0.066732 0.151159 0.742154 0.106541 0.000145 0.009092 0.810456 0.125524 0.054927 0.009089 0.000139 0.458883 0.531889 0.011960 0.832868 0.000139 0.155033 0.000145 0.739758 0.201224 0.058872 0.037982 0.789332 0.019832 0.152854 0.234871 0.008250 0.007225 0.749654 0.040827 0.549316 0.091828 0.318029 0.008025 0.937802 0.042531 0.011641 MOTIF 5-AAAATRAAANMCA STREME-5 letter-probability matrix: alength= 4 w= 13 nsites= 361 P= 2.2e-001 0.763170 0.061416 0.098659 0.076755 0.844226 0.065798 0.026365 0.063611 0.855179 0.032937 0.013221 0.098662 0.833643 0.092996 0.037319 0.036042 0.004462 0.026365 0.133711 0.835461 0.282684 0.079851 0.492797 0.144667 0.852988 0.063608 0.054844 0.028560 0.781976 0.101759 0.006649 0.109615 0.681018 0.083324 0.085515 0.150143 0.267346 0.258580 0.198151 0.275923 0.411560 0.234484 0.179713 0.174242 0.197247 0.463223 0.125855 0.213676 0.808079 0.028556 0.026365 0.137000 MOTIF 6-CCCCACCCC STREME-6 letter-probability matrix: alength= 4 w= 9 nsites= 165 P= 6.0e-001 0.006025 0.924231 0.069369 0.000376 0.015386 0.759125 0.208186 0.017304 0.034330 0.853919 0.073280 0.038471 0.034349 0.870251 0.089479 0.005921 0.561406 0.000358 0.248081 0.190155 0.037467 0.961800 0.000358 0.000376 0.000376 0.956236 0.043013 0.000376 0.000376 0.866355 0.060768 0.072501 0.022659 0.802329 0.062591 0.112421 MOTIF 7-AAAACAAACCTAG STREME-7 letter-probability matrix: alength= 4 w= 13 nsites= 34 P= 1.0e+000 0.627635 0.222356 0.111810 0.038198 0.922370 0.001297 0.074972 0.001361 0.922338 0.075005 0.001297 0.001361 0.885533 0.038135 0.074972 0.001361 0.001361 0.922307 0.038135 0.038198 0.996046 0.001297 0.001297 0.001361 0.996046 0.001297 0.001297 0.001361 0.811857 0.074972 0.074972 0.038198 0.111874 0.885469 0.001297 0.001361 0.038198 0.885469 0.074972 0.001361 0.001361 0.222323 0.148648 0.627668 0.664473 0.038135 0.148681 0.148712 0.038198 0.111810 0.848631 0.001361 ******************************************************************************** Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05). ******************************************************************************** COMMAND: streme -oc streme_example_output_files -p Klf1.fna ******************************************************************************** CPU: Timothys-Mac-Mini.local ******************************************************************************** FINALTIME: 25.52 seconds ********************************************************************************