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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-RGCCACACCCWNNBY STREME-1
letter-probability matrix: alength= 4 w= 15 nsites= 325 E= 1.6e-008
 0.413723 0.130724 0.317318 0.138235
 0.261341 0.049866 0.676240 0.012554
 0.077862 0.831729 0.034317 0.056092
 0.000115 0.999661 0.000109 0.000115
 0.690501 0.287506 0.015658 0.006334
 0.003225 0.996551 0.000109 0.000115
 0.788197 0.000109 0.208469 0.003225
 0.009444 0.987222 0.000109 0.003225
 0.000115 0.990331 0.003219 0.006334
 0.000115 0.987219 0.000109 0.012557
 0.479027 0.127615 0.009439 0.383920
 0.227134 0.276891 0.292429 0.203546
 0.280005 0.262632 0.186696 0.270667
 0.158719 0.405680 0.208465 0.227136
 0.189816 0.390134 0.143162 0.276888

MOTIF 2-CTCCACCCAK STREME-2
letter-probability matrix: alength= 4 w= 10 nsites= 43 E= 2.1e-001
 0.000985 0.917050 0.000938 0.081028
 0.000985 0.054277 0.000938 0.943800
 0.012040 0.932698 0.000938 0.054323
 0.000985 0.997093 0.000938 0.000985
 0.943800 0.000938 0.054277 0.000985
 0.000985 0.917050 0.000938 0.081028
 0.000985 0.970435 0.027596 0.000985
 0.000985 0.997093 0.000938 0.000985
 0.970481 0.000938 0.027596 0.000985
 0.000985 0.080981 0.345478 0.572556

MOTIF 3-RGAGATAAGRVD STREME-3
letter-probability matrix: alength= 4 w= 12 nsites= 336 E= 3.1e-001
 0.310705 0.013961 0.476235 0.199099
 0.229819 0.161173 0.476225 0.132783
 0.725081 0.059957 0.000162 0.214800
 0.000170 0.000162 0.999498 0.000170
 0.999506 0.000162 0.000162 0.000170
 0.000170 0.013961 0.000162 0.985707
 0.999506 0.000162 0.000162 0.000170
 0.994907 0.000162 0.004762 0.000170
 0.144676 0.082955 0.728895 0.043474
 0.411153 0.135467 0.412596 0.040784
 0.390040 0.254299 0.245096 0.110565
 0.276965 0.142762 0.223999 0.356273

MOTIF 4-CCCKCCCTYC STREME-4
letter-probability matrix: alength= 4 w= 10 nsites= 378 E= 3.3e-001
 0.121215 0.751342 0.060711 0.066732
 0.151159 0.742154 0.106541 0.000145
 0.009092 0.810456 0.125524 0.054927
 0.009089 0.000139 0.458883 0.531889
 0.011960 0.832868 0.000139 0.155033
 0.000145 0.739758 0.201224 0.058872
 0.037982 0.789332 0.019832 0.152854
 0.234871 0.008250 0.007225 0.749654
 0.040827 0.549316 0.091828 0.318029
 0.008025 0.937802 0.042531 0.011641

MOTIF 5-AAAATRAAANMCA STREME-5
letter-probability matrix: alength= 4 w= 13 nsites= 361 E= 1.5e+000
 0.763170 0.061416 0.098659 0.076755
 0.844226 0.065798 0.026365 0.063611
 0.855179 0.032937 0.013221 0.098662
 0.833643 0.092996 0.037319 0.036042
 0.004462 0.026365 0.133711 0.835461
 0.282684 0.079851 0.492797 0.144667
 0.852988 0.063608 0.054844 0.028560
 0.781976 0.101759 0.006649 0.109615
 0.681018 0.083324 0.085515 0.150143
 0.267346 0.258580 0.198151 0.275923
 0.411560 0.234484 0.179713 0.174242
 0.197247 0.463223 0.125855 0.213676
 0.808079 0.028556 0.026365 0.137000

MOTIF 6-CCCCACCCC STREME-6
letter-probability matrix: alength= 4 w= 9 nsites= 165 E= 4.2e+000
 0.005992 0.924645 0.068990 0.000373
 0.015302 0.760440 0.207048 0.017209
 0.039604 0.849255 0.072879 0.038261
 0.034161 0.870960 0.088991 0.005889
 0.558340 0.000356 0.252188 0.189116
 0.037262 0.962008 0.000356 0.000373
 0.000373 0.956475 0.042778 0.000373
 0.000373 0.867085 0.060436 0.072105
 0.022536 0.803409 0.062249 0.111807

MOTIF 7-AAAACAAACCTAG STREME-7
letter-probability matrix: alength= 4 w= 13 nsites= 34 E= 7.0e+000
 0.627635 0.222356 0.111810 0.038198
 0.922370 0.001297 0.074972 0.001361
 0.922338 0.075005 0.001297 0.001361
 0.885533 0.038135 0.074972 0.001361
 0.001361 0.922307 0.038135 0.038198
 0.996046 0.001297 0.001297 0.001361
 0.996046 0.001297 0.001297 0.001361
 0.811857 0.074972 0.074972 0.038198
 0.111874 0.885469 0.001297 0.001361
 0.038198 0.885469 0.074972 0.001361
 0.001361 0.222323 0.148648 0.627668
 0.664473 0.038135 0.148681 0.148712
 0.038198 0.111810 0.848631 0.001361

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --oc streme_example_output_files --p Klf1.fna
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CPU:		Timothys-iMac.local
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FINALTIME:	49.70 seconds
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