meme2alph

Usage:

meme2alph [options] <motif file> [<alphabet file>]

Description

Extract the alphabet from a MEME Motif Format file and write it out as an alphabet definition.

Input

<motif file>

The name of a file containing motifs in MEME Motif Format.

[<alphabet file>]

(Optional) The name of a file to receive the alphabet definition.

Output

Writes the extracted alphabet definition to the <alphabet file> or standard output if no file was given.

Options

Option Parameter Description Default Behavior
General Options