transfac2meme [options] <matrix file>
Convert a TRANSFAC 'matrix.dat' file into a MEME motif file suitable for use with MEME Suite programs.
A file in TRANSFAC matrix format. Note that Dollar signs in TRANSFAC IDs are converted to underscores.
Option | Parameter | Description | Default Behaviour |
---|---|---|---|
General Options | |||
-use_acc | Use the accession name instead of the TRANSFAC ID as the motif identifier. | ||
-ids | ID file | Keep only the motifs identified in the ID file. | Keep all motifs. |
-species | species name | Keep only motifs with this species name. | Keep all motifs. |