Changes
  Configure: Changed compiler flags to support large files for OS calls.
  Licence: Changed licence links.
  Perl Scripts: Replaced newer perl object oriented file handle syntax with old form as it was causing perl v5.8.0 to crash.
 
Files changed in patch:
  website/html/meme-download.html
  website/html/downloads.html
  website/cgi-bin/meme_request.pl

Installing the patch
  1) Ensure all previous patches have been installed.
  2) change into the meme_4.4.0 directory.
  3) run 

	   patch -p0 -i PATH_TO_PATCH/meme_4.4.0.patch_3

  4) run 

	   make clean

  5) run 

	   make CFLAGS="$(getconf LFS_CFLAGS)" 
     
    (with the quotes)

  6) and finally if you want to propagate the new build to the 
     install directory, run

	   make install