diff -r 02aa25f920a7 -r caa80f3ff934 etc/centrimo_template.html --- a/etc/centrimo_template.html Fri Oct 05 09:45:00 2012 +1000 +++ b/etc/centrimo_template.html Fri Oct 05 00:26:25 2012 -0700 @@ -371,7 +371,7 @@ Window: + onchange="recreate_table=true; make_MP_graph(); recreate_table=false" value="20" size="2" step="1" min="1">
Discover short regular expression motifs.
Note that the DREME webservice also enforces a time limit diff -r 02aa25f920a7 -r caa80f3ff934 website/cgi-bin/meme-chip.pl --- a/website/cgi-bin/meme-chip.pl Fri Oct 05 09:45:00 2012 +1000 +++ b/website/cgi-bin/meme-chip.pl Fri Oct 05 00:26:25 2012 -0700 @@ -177,7 +177,7 @@ $d{MEME_PAL} = $utils->param_bool($q, 'meme_pal'); # DREME Specific Options # get the motif E-value cut-off threshold - $d{DREME_E} = $utils->param_num($q, 'dreme_ethresh', 0, undef, 0.05); + $d{DREME_E} = $utils->param_num($q, 'dreme_ethresh', 'DREME E-value threshold', 0, undef, 0.05); # get the optional motif count cut-off if ($utils->param_bool($q, 'dreme_nmotifs_enable')) { $d{DREME_M} = $utils->param_int($q, 'dreme_nmotifs', @@ -185,13 +185,13 @@ } # CentriMo Specific Options # Get the minimum acceptable site score - $d{CENTRIMO_SCORE} = $utils->param_num($q, 'centrimo_score', undef, undef, 5); + $d{CENTRIMO_SCORE} = $utils->param_num($q, 'centrimo_score', 'CentriMo minimum match score', undef, undef, 5); # Get the optional maximum central window if ($utils->param_bool($q, 'centrimo_maxreg_enable')) { - $d{CENTRIMO_MAXREG} = $utils->param_int($q, 'centrimo_maxreg', 1, undef, 200); + $d{CENTRIMO_MAXREG} = $utils->param_num($q, 'centrimo_maxreg', 'CentriMo maximum central region width', 1, undef, 200); } # get the maximum central enrichment E-value to report - $d{CENTRIMO_ETHRESH} = $utils->param_num($q, 'centrimo_ethresh', 0, undef, 10); + $d{CENTRIMO_ETHRESH} = $utils->param_num($q, 'centrimo_ethresh', 'CentriMo E-value threshold', 0, undef, 10); # get if the seq IDs should be stored $d{CENTRIMO_STORE_IDS} = $utils->param_bool($q, 'centrimo_store_ids'); diff -r 02aa25f920a7 -r caa80f3ff934 website/cgi-bin/meme-chip.tmpl --- a/website/cgi-bin/meme-chip.tmpl Fri Oct 05 09:45:00 2012 +1000 +++ b/website/cgi-bin/meme-chip.tmpl Fri Oct 05 00:26:25 2012 -0700 @@ -213,7 +213,7 @@
Search one or more DNA motifs against a DNA motif database.