MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)
For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html.
To get a copy of the MoMo software please access http://meme-suite.org.
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
High-scoring Motif Occurences | Debugging Information | Results in TSV format | Results in MEME format |
Command line:
momo simple --oc results/momo16 --psm-type comet --sequence-column 'modified sequence' momo/small-comet-mod.txt
PARAMETERS: algorithm: simple post-translationally modified peptide filenames: file 1: momo/small-comet-mod.txt PTM filetype: comet modified peptide column: 'modified sequence' motif width: 7 filter: false remove unknowns: false eliminate repeats: true eliminate repeat width: 7 min occurrences: 5 single motif per mass: false hash fasta: false hash fasta width: 0
This information can be useful in the event you wish to report a problem with the MoMo software.