Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2004/07/16 05:53:30)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE /home/meme/meme.3.0.6/tests/lipocalin.s (peptide)
	Last updated on Fri Jul 16 15:53:57 2004
	Database contains 5 sequences, 903 residues

	MOTIFS meme.lipocalin.zoops.4.Linuxx86_64.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    26   GACPAVRPMRNFDIQKFAGTWHEIAK
	  2    20   NNVFWILDTDYKNYLIQYMC

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1
	----- -----
	   2   0.25
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
ICYA_MANSE 1.7e-36 189
D A ?
BBP_PIEBR 1.9e-36 173
D A ?
RETB_BOVIN 8.6e-29 183
D A ?
LACB_BOVIN 3.5e-24 178
D A ?
MUP2_MOUSE 6.9e-24 180

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
ICYA_MANSE 1.7e-36

1
2
S A ?
BBP_PIEBR 1.9e-36

1
2
S A ?
RETB_BOVIN 8.6e-29

1
2
S A ?
LACB_BOVIN 3.5e-24

1
2
S A ?
MUP2_MOUSE 6.9e-24

1
2
SCALE
| | | | | | | |
1 25 50 75 100 125 150 175

SECTION III: ANNOTATED SEQUENCES


ICYA_MANSE
S D ?


LENGTH = 189 COMBINED P-VALUE = 3.46e-37 E-VALUE = 1.7e-36
DIAGRAM: 6-[1]-67-[2]-70
           [1]
           3.0e-24
           GACPAVRPMRNFDIQKFAGTWHEIAK
           ++++++++++++++++++++++++++
1    GDIFYPGYCPDVKPVNDFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLE

                             [2]
                             4.6e-20
                             NNVFWILDTDYKNYLIQYMC
                             + ++++++++++++++++++
76   IAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVD



BBP_PIEBR
S D ?


LENGTH = 173 COMBINED P-VALUE = 3.89e-37 E-VALUE = 1.9e-36
DIAGRAM: 5-[1]-64-[2]-58
          [1]
          1.5e-24
          GACPAVRPMRNFDIQKFAGTWHEIAK
          ++++++++++++++++++++++++++
1    NVYHDGACPEVKPVDNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEGTAYP

                         [2]
                         1.2e-19
                         NNVFWILDTDYKNYLIQYMC
                         ++++++++++++++++++++
76   VGDSKIGKIYHKLTYGGVTKENVFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTGEAKTAVENYLI



RETB_BOVIN
S D ?


LENGTH = 183 COMBINED P-VALUE = 1.72e-29 E-VALUE = 8.6e-29
DIAGRAM: 3-[1]-71-[2]-63
        [1]
        2.5e-19
        GACPAVRPMRNFDIQKFAGTWHEIAK
        +++++++++++++ ++++++++++++
1    ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG

                              [2]
                              3.7e-17
                              NNVFWILDTDYKNYLIQYMC
                              + ++++++++++++++++++
76   TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQK



LACB_BOVIN
S D ?


LENGTH = 178 COMBINED P-VALUE = 7.03e-25 E-VALUE = 3.5e-24
DIAGRAM: 14-[1]-64-[2]-54
                   [1]
                   3.1e-18
                   GACPAVRPMRNFDIQKFAGTWHEIAK
                   +++++++++++ ++++++++++++++
1    MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ

                                  [2]
                                  1.5e-13
                                  NNVFWILDTDYKNYLIQYMC
                                  ++++ +++++++ ++++++
76   KWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALE



MUP2_MOUSE
S D ?


LENGTH = 180 COMBINED P-VALUE = 1.38e-24 E-VALUE = 6.9e-24
DIAGRAM: 16-[1]-62-[2]-56
                     [1]
                     8.4e-17
                     GACPAVRPMRNFDIQKFAGTWHEIAK
                     ++++++++++++ +++++++++++++
1    MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFH

                                  [2]
                                  1.1e-14
                                  NNVFWILDTDYKNYLIQYMC
                                  +++++++++++++++++++
76   TVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKE

Debugging Information




CPU: chromo
Time 0.020000 secs.

mast meme.lipocalin.zoops.4.Linuxx86_64.html -stdout

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E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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