MAST - Motif Alignment and Search Tool
MAST version 3.0 (Release date: 2004/07/16 05:53:30)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.sdsc.edu.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE /home/meme/meme.3.0.6/tests/adh.s (peptide)
Last updated on Fri Jul 16 15:53:52 2004
Database contains 33 sequences, 9996 residues
MOTIFS meme.adh.zoops.4.Linuxx86_64.html (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 27 YSASKFAVRMLTRSMRREYAPHGIRVN
2 25 QGKVVLITGCSSGIGKATAKHLHKE
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1
----- -----
2 0.27
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 33 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
Links | Sequence Name | Description | E-value | Length
|
---|
| YRTP_BACSU
| HYPOTHETICAL 25.3 KD PROT...
| 5.2e-34
| 238
|
| BUDC_KLETE
| ACETOIN(DIACETYL) REDUCTA...
| 7.4e-34
| 241
|
| AP27_MOUSE
| ADIPOCYTE P27 PROTEIN (AP...
| 3.7e-28
| 244
|
| FIXR_BRAJA
| FIXR PROTEIN
| 2e-27
| 278
|
| DHII_HUMAN
| CORTICOSTEROID 11-BETA-DE...
| 9.7e-27
| 292
|
| DHGB_BACME
| GLUCOSE 1-DEHYDROGENASE B...
| 1e-26
| 262
|
| HDE_CANTR
| HYDRATASE-DEHYDROGENASE-E...
| 2.2e-26
| 906
|
| HDHA_ECOLI
| 7-ALPHA-HYDROXYSTEROID DE...
| 2.3e-26
| 255
|
| NODG_RHIME
| NODULATION PROTEIN G (HOS...
| 6.1e-26
| 245
|
| YINL_LISMO
| HYPOTHETICAL 26.8 KD PROT...
| 1.2e-25
| 248
|
| RIDH_KLEAE
| RIBITOL 2-DEHYDROGENASE (...
| 6.7e-25
| 249
|
| HMTR_LEIMA
| no comment
| 7.7e-25
| 287
|
| FVT1_HUMAN
| no comment
| 1.8e-24
| 332
|
| DHMA_FLAS1
| N-ACYLMANNOSAMINE 1-DEHYD...
| 4.3e-24
| 270
|
| DHB2_HUMAN
| no comment
| 5.7e-24
| 387
|
| 3BHD_COMTE
| 3-BETA-HYDROXYSTEROID DEH...
| 1.2e-23
| 253
|
| ENTA_ECOLI
| 2,3-DIHYDRO-2,3-DIHYDROXY...
| 2.4e-23
| 248
|
| BA72_EUBSP
| 7-ALPHA-HYDROXYSTEROID DE...
| 2.6e-23
| 249
|
| 2BHD_STREX
| 20-BETA-HYDROXYSTEROID DE...
| 3.7e-23
| 255
|
| BDH_HUMAN
| D-BETA-HYDROXYBUTYRATE DE...
| 7.5e-23
| 343
|
| DHES_HUMAN
| ESTRADIOL 17 BETA-DEHYDRO...
| 3.2e-22
| 327
|
| GUTD_ECOLI
| SORBITOL-6-PHOSPHATE 2-DE...
| 5.9e-22
| 259
|
| DHB3_HUMAN
| no comment
| 7.5e-22
| 310
|
| BPHB_PSEPS
| BIPHENYL-CIS-DIOL DEHYDRO...
| 5.4e-20
| 275
|
| LIGD_PSEPA
| C ALPHA-DEHYDROGENASE (EC...
| 1.1e-19
| 305
|
| RFBB_NEIGO
| no comment
| 1.1e-18
| 346
|
| DHCA_HUMAN
| no comment
| 7e-17
| 276
|
| MAS1_AGRRA
| no comment
| 8.5e-16
| 476
|
| PCR_PEA
| no comment
| 1.3e-15
| 399
|
| ADH_DROME
| ALCOHOL DEHYDROGENASE (EC...
| 8.2e-15
| 255
|
| YURA_MYXXA
| no comment
| 2.6e-12
| 258
|
| FABI_ECOLI
| no comment
| 9e-10
| 262
|
| CSGA_MYXXA
| no comment
| 6e-08
| 166
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
Links | Name | Expect | Motifs
|
---|
| YRTP_BACSU
| 5.2e-34
|
|
| BUDC_KLETE
| 7.4e-34
|
|
| AP27_MOUSE
| 3.7e-28
|
|
| FIXR_BRAJA
| 2e-27
|
|
| DHII_HUMAN
| 9.7e-27
|
|
| DHGB_BACME
| 1e-26
|
|
| HDE_CANTR
| 2.2e-26
|
|
| HDHA_ECOLI
| 2.3e-26
|
|
| NODG_RHIME
| 6.1e-26
|
|
| YINL_LISMO
| 1.2e-25
|
|
| RIDH_KLEAE
| 6.7e-25
|
|
| HMTR_LEIMA
| 7.7e-25
|
|
| FVT1_HUMAN
| 1.8e-24
|
|
| DHMA_FLAS1
| 4.3e-24
|
|
| DHB2_HUMAN
| 5.7e-24
|
|
| 3BHD_COMTE
| 1.2e-23
|
|
| ENTA_ECOLI
| 2.4e-23
|
|
| BA72_EUBSP
| 2.6e-23
|
|
| 2BHD_STREX
| 3.7e-23
|
|
| BDH_HUMAN
| 7.5e-23
|
|
| DHES_HUMAN
| 3.2e-22
|
|
| GUTD_ECOLI
| 5.9e-22
|
|
| DHB3_HUMAN
| 7.5e-22
|
|
| BPHB_PSEPS
| 5.4e-20
|
|
| LIGD_PSEPA
| 1.1e-19
|
|
| RFBB_NEIGO
| 1.1e-18
|
|
| DHCA_HUMAN
| 7e-17
|
|
| MAS1_AGRRA
| 8.5e-16
|
|
| PCR_PEA
| 1.3e-15
|
|
| ADH_DROME
| 8.2e-15
|
|
| YURA_MYXXA
| 2.6e-12
|
|
| FABI_ECOLI
| 9e-10
|
|
| CSGA_MYXXA
| 6e-08
|
|
SCALE
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
300 |
325 |
350 |
375 |
400 |
425 |
450 |
475 |
500 |
525 |
550 |
575 |
600 |
625 |
650 |
675 |
700 |
725 |
750 |
775 |
800 |
825 |
850 |
875 |
900 |
|
---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
YRTP_BACSU
HYPOTHETICAL 25.3 KD PROTEIN IN RTP 5'REGION (ORF238)
LENGTH = 238 COMBINED P-VALUE = 1.57e-35 E-VALUE = 5.2e-34
DIAGRAM: 4-[2]-125-[1]-57
[2]
2.0e-20
QGKVVLITGCSSGIGKATAKHLHKE
+++ +++++++++++++++++++++
1 MQSLQHKTALITGGGRGIGRATALALAKEGVNIGLIGRTSANVEKVAEEVKALGVKAAFAAADVKDADQVNQAVA
[1]
2.0e-22
YSASKFAVRMLTRSMRREYAPHGIRVN
++++++++ ++++++++++++++++++
151 VTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDMSIELNLTDGNPEKVMQPEDLAEYMVAQLKLDPR
BUDC_KLETE
ACETOIN(DIACETYL) REDUCTASE (EC 1.1.1.5) (ACETOIN DEHYDROGENASE)
LENGTH = 241 COMBINED P-VALUE = 2.24e-35 E-VALUE = 7.4e-34
DIAGRAM: [2]-33-[1]-66-[1]-63
[2] [1]
1.5e-20 7.7e-05
QGKVVLITGCSSGIGKATAKHLHKE YSASKFAVRMLTRSMRR
+++++++++++++++++++++++++ + + + ++ +++
1 MQKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATATAVAAEINQAGGRAVAIKVDVSRRDQVFAAVEQARK
EYAPHGIRVN
++ ++ ++
76 ALGGFNVIVNNAGIAPSTPIESITEEIVDRVYNINVKGVIWGMQAAVEAFKKEGHGGKIVNACSQAGHVGNPELA
[1]
3.9e-22
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++++++++++++++++
151 VYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPMWAEIDRQCRKRRANRWATARLNLPNASPLAACRSLK
AP27_MOUSE
ADIPOCYTE P27 PROTEIN (AP27)
LENGTH = 244 COMBINED P-VALUE = 1.14e-29 E-VALUE = 3.7e-28
DIAGRAM: 5-[2]-118-[1]-69
[2]
7.6e-16
QGKVVLITGCSSGIGKATAKHLHKE
++ ++++++++++++ ++++++++
1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIG
[1
4.
YS
++
76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYS
]
3e-21
ASKFAVRMLTRSMRREYAPHGIRVN
++++++++++++++++++++ ++++
151 STKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSD
FIXR_BRAJA
FIXR PROTEIN
LENGTH = 278 COMBINED P-VALUE = 6.20e-29 E-VALUE = 2e-27
DIAGRAM: 34-[2]-129-[1]-63
[2]
1.7e-16
QGKVVLITGCSSGIGKATAKHLHKE
+ ++++ +++++++++++++ + ++
1 MGLDLPNDNLIRGPLPEAHLDRLVDAVNARVDRGEPKVMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGER
[1]
8.0e-20
YSASKFAVRMLTRSMRREYAPHGIRVN
+ +++++ ++++++++++++++++++
151 APILLAQGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTD
DHII_HUMAN
CORTICOSTEROID 11-BETA-DEHYDROGENASE (EC 1.1.1.146) (11-DH) (11-BETA- HYDROXYSTEROID DEHYDROGENASE) (11-BETA-HSD)
LENGTH = 292 COMBINED P-VALUE = 2.94e-28 E-VALUE = 9.7e-27
DIAGRAM: 32-[2]-125-[1]-83
[2]
7.5e-20
QGKVVLITGCSSGIGKATAKHLHKE
+++ +++++++++++++++++++++
1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV
[1]
8.1e-16
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++ ++ +++++ ++++++
151 TVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMK
DHGB_BACME
GLUCOSE 1-DEHYDROGENASE B (EC 1.1.1.47)
LENGTH = 262 COMBINED P-VALUE = 3.03e-28 E-VALUE = 1e-26
DIAGRAM: 5-[2]-129-[1]-76
[2]
1.3e-16
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++ +++++++++++++
1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEEIKKVGGEAIAVKGDVTVESDVIN
[1]
6.2e-19
YSASKFAVRMLTRSMRREYAPHGIRVN
+ +++++++ +++++++++++++++++
151 KIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEE
HDE_CANTR
HYDRATASE-DEHYDROGENASE-EPIMERASE (HDE)
LENGTH = 906 COMBINED P-VALUE = 6.68e-28 E-VALUE = 2.2e-26
DIAGRAM: 6-[2]-131-[1]-131-[2]-121-[1]-235-[2]-153
[2]
7.4e-15
QGKVVLITGCSSGIGKATAKHLHKE
++++++++++++++++ +++++++
1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNV
[1]
2.4e-13
YSASKFAVRMLTRSMRREYAPHGIRVN
+ +++ ++ ++ ++++++ ++++++ +
151 PAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMTESILPPPMLEKLGPEKVAPLVLYLS
[2]
9.6e-19
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++ +++++++++++++
301 TNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQ
[1]
1.3e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
++++++++ +++++++ + ++ +++++
451 NITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMTLTIFREQDKNLYHADQVAPLL
[2]
6.8e-05
QGKVVLITGCSSGIGKATAKHL
++ ++++ +++ + +
676 FNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELI
HKE
+++
751 YSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFP
HDHA_ECOLI
7-ALPHA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.159) (HSDH)
LENGTH = 255 COMBINED P-VALUE = 6.86e-28 E-VALUE = 2.3e-26
DIAGRAM: 9-[2]-80-[1]-17-[1]-70
[2]
3.6e-17
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++ +++++++++++++
1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQEL
[1]
6.9e-05
YSASKFAVRMLTRSMRREYAPHGIRVN
+ ++ ++++ + ++ + + +
76 SALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE
[1]
5.3e-18
YSASKFAVRMLTRSMRREYAPHGIRVN
+ +++++ +++++++++++++++++++
151 NKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIA
NODG_RHIME
NODULATION PROTEIN G (HOST-SPECIFICITY OF NODULATION PROTEIN C)
LENGTH = 245 COMBINED P-VALUE = 1.86e-27 E-VALUE = 6.1e-26
DIAGRAM: 4-[2]-122-[1]-67
[2]
1.6e-14
QGKVVLITGCSSGIGKATAKHLHKE
++ ++++++++ ++ ++++ ++++
1 MFELTGRKALVTGASGAIGGAIARVLHAQGAIVGLHGTQIEKLETLATELGDRVKLFPANLANRDEVKALGQRAE
[1]
3.6e-20
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++++++++++++++++
151 NYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQKEKIMVAIPIHRMGTGTEVASAVAYLAS
YINL_LISMO
HYPOTHETICAL 26.8 KD PROTEIN IN INLA 5'REGION (ORFA)
LENGTH = 248 COMBINED P-VALUE = 3.70e-27 E-VALUE = 1.2e-25
DIAGRAM: 3-[2]-125-[1]-68
[2]
7.5e-20
QGKVVLITGCSSGIGKATAKHLHKE
++++++++++++++++++++ ++++
1 MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQIIKANSGEAIFAKTDVTKREDNKKLVEL
[1]
1.5e-14
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++ +++ ++++ ++++ +++
151 GAVYGATKWAVRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVA
RIDH_KLEAE
RIBITOL 2-DEHYDROGENASE (EC 1.1.1.56) (RDH)
LENGTH = 249 COMBINED P-VALUE = 2.03e-26 E-VALUE = 6.7e-25
DIAGRAM: 12-[2]-122-[1]-63
[2]
1.4e-16
QGKVVLITGCSSGIGKATAKHLHKE
+++++ +++++++++++++++++ +
1 MKHSVSSMNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFALQVDLMQADQV
[1]
4.4e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
++++++++++++++++++++++++++
151 VVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPIEVAESV
HMTR_LEIMA
no comment
LENGTH = 287 COMBINED P-VALUE = 2.34e-26 E-VALUE = 7.7e-25
DIAGRAM: 4-[2]-163-[1]-68
[2]
1.6e-14
QGKVVLITGCSSGIGKATAKHLHKE
+ ++++++++++ +++++++ ++++
1 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVS
[1]
3.3e-19
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++++++++++++++++
151 PYFLIKAFAHRSRHPSQASRTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL
FVT1_HUMAN
no comment
LENGTH = 332 COMBINED P-VALUE = 5.43e-26 E-VALUE = 1.8e-24
DIAGRAM: 30-[2]-130-[1]-120
[2]
6.9e-16
QGKVVLITGCSSGIGKATAKHLHKE
+ ++++++++++++++++++++++
1 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKE
[1]
1.3e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++ +++++++++++++++
151 YPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFA
DHMA_FLAS1
N-ACYLMANNOSAMINE 1-DEHYDROGENASE (EC 1.1.1.233) (NAM-DH)
LENGTH = 270 COMBINED P-VALUE = 1.31e-25 E-VALUE = 4.3e-24
DIAGRAM: 12-[2]-127-[1]-79
[2]
1.2e-15
QGKVVLITGCSSGIGKATAKHLHKE
++ +++++++++++++++++++++
1 TTAGVSRRPGRLAGKAAIVTGAAGGIGRATVEAYLREGASVVAMDLAPRLAATRYEEPGAIPIACDLADRAAIDA
[1]
2.9e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
+ ++++++ +++++++++++++++ ++
151 GSVNSFMAEPEAAAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTGNNTGYSEPRLAEQVLDEVALGRP
DHB2_HUMAN
no comment
LENGTH = 387 COMBINED P-VALUE = 1.72e-25 E-VALUE = 5.7e-24
DIAGRAM: 80-[2]-126-[1]-129
[2]
9.2e-16
QGKVVLITGCSSGIGKATAKHLHKE
+++ ++++++++++++++++++ +
76 ELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYS
[1]
2.3e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++ ++++++++++++
226 MERLASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYI
3BHD_COMTE
3-BETA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.51)
LENGTH = 253 COMBINED P-VALUE = 3.78e-25 E-VALUE = 1.2e-23
DIAGRAM: 4_[2]_30_[1]_64_[1]_76
[2] [1]
5.5e-17 4.4e-05
QGKVVLITGCSSGIGKATAKHLHKE YSASKFAVRMLTRSMR
+++++++++++++++++ ++ ++ + ++ + + + + +
1 TNRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ
REYAPHGIRVN
+ ++++++ ++
76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAG
[1]
2.1e-15
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++++++++++++ ++
151 YSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQL
ENTA_ECOLI
2,3-DIHYDRO-2,3-DIHYDROXYBENZOATE DEHYDROGENASE (EC 1.3.1.28)
LENGTH = 248 COMBINED P-VALUE = 7.22e-25 E-VALUE = 2.4e-23
DIAGRAM: 3-[2]-115-[1]-78
[2]
4.2e-18
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++++++++++++++++
1 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDA
[1]
5.7e-14
YSASKFA
+++++++
76 LVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAA
VRMLTRSMRREYAPHGIRVN
++++ + ++++ ++++++
151 LKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFL
BA72_EUBSP
7-ALPHA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.159) (BILE ACID 7-DEHYDROXYLASE) (BILE ACID-INDUCIBLE PROTEIN)
LENGTH = 249 COMBINED P-VALUE = 7.76e-25 E-VALUE = 2.6e-23
DIAGRAM: 4-[2]-35-[1]-65-[1]-66
[2] [1]
3.2e-16 1.1e-05
QGKVVLITGCSSGIGKATAKHLHKE YSASKFAVRML
++++ +++++ ++++++ ++ ++ + + ++ +
1 MNLVQDKVTIITGGTRGIGFAAAKIFIDNGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAA
TRSMRREYAPHGIRVN
+ ++ ++++ + ++
76 VGQVAQKYGRLDVMINNAGITSNNVFSRVSEEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFG
[1]
8.1e-16
YSASKFAVRMLTRSMRREYAPHGIRVN
+ +++++++++++ + +++ ++++++
151 SLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMTNGNPPEIMEGYLKALPMKRMLEPEEIANVY
2BHD_STREX
20-BETA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.53)
LENGTH = 255 COMBINED P-VALUE = 1.14e-24 E-VALUE = 3.7e-23
DIAGRAM: 4_[2]_122_[1]_77
[2]
4.8e-14
QGKVVLITGCSSGIGKATAKHLHKE
+++ +++++++++++ + +++ +++
1 MNDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR
[1]
7.5e-18
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++ +++++++ +++++
151 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLL
BDH_HUMAN
D-BETA-HYDROXYBUTYRATE DEHYDROGENASE PRECURSOR (EC 1.1.1.30) (BDH) (3-HYDROXYBUTYRATE DEHYDROGENASE) (FRAGMENT)
LENGTH = 343 COMBINED P-VALUE = 2.28e-24 E-VALUE = 7.5e-23
DIAGRAM: 53-[2]-129-[1]-109
[2]
3.5e-16
QGKVVLITGCSSGIGKATAKHL
++ +++++++++ ++++++++
1 GLRPPPPGRFSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCDSGFGFSLAKHL
HKE
+++
76 HSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVFRSEEVEKVVGDCPFEPEGPEKGMWGLVNNAGISTF
[1]
1.1e-15
YSASKFAVRMLTRSMRRE
++ +++++++++++++++
151 GEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYE
YAPHGIRVN
+++++++++
226 MYPLGVKVSVVEPGNFIAATSLYNPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVID
DHES_HUMAN
ESTRADIOL 17 BETA-DEHYDROGENASE (EC 1.1.1.62) (20 ALPHA-HYDROXYSTEROID DEHYDROGENASE) (E2DH) (17-BETA-HSD) (PLACENTAL 17-BETA-HYDROXYSTEROID DEHYDROGENASE)
LENGTH = 327 COMBINED P-VALUE = 9.59e-24 E-VALUE = 3.2e-22
DIAGRAM: [2]-129-[1]-146
[2]
3.3e-15
QGKVVLITGCSSGIGKATAKHLHKE
++++++++++++++++ +++++
1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAA
[1]
5.4e-16
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++++++++++ + + +++ +
151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQV
GUTD_ECOLI
SORBITOL-6-PHOSPHATE 2-DEHYDROGENASE (EC 1.1.1.140) (GLUCITOL-6- PHOSPHATE DEHYDROGENASE) (KETOSEPHOSPHATE REDUCTASE)
LENGTH = 259 COMBINED P-VALUE = 1.80e-23 E-VALUE = 5.9e-22
DIAGRAM: [2]-128-[1]-79
[2]
3.5e-12
QGKVVLITGCSSGIGKATAKHLHKE
+++++++ ++++ ++ +++ ++++
1 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGADATSEQSCLALSRGV
[1]
1.6e-18
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++ ++++++++++++++++++
151 NSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGC
DHB3_HUMAN
no comment
LENGTH = 310 COMBINED P-VALUE = 2.28e-23 E-VALUE = 7.5e-22
DIAGRAM: 46-[2]-126-[1]-86
[2]
1.7e-16
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++ +++++++ +++++
1 MGDVLEQFFILTGLLVCLACLAKCVRFSRCVLLNYYKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNV
[1]
2.8e-14
YSASKFAVRMLTRSMRREYAPHGIRVN
++++++++++++++++ +++ + + ++
151 QSLIHCNITSVVKMTQLILKHMESRQKGLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVIIQV
BPHB_PSEPS
BIPHENYL-CIS-DIOL DEHYDROGENASE (EC 1.3.1.-)
LENGTH = 275 COMBINED P-VALUE = 1.63e-21 E-VALUE = 5.4e-20
DIAGRAM: 3-[2]-124-[1]-96
[2]
8.3e-16
QGKVVLITGCSSGIGKATAKHLHKE
++ +++++++++++++++ +++++
1 MKLKGEAVLITGGASGLGRALVDRFVAEAKVAVLDKSAERLAELETDLGDNVLGIVGDVRSLEDQKQAASRCVAR
[1]
5.9e-13
YSASKFAVRMLTRSMRREYAPHGIRVN
++++++++ +++++++++++++ +
151 PLYTAAKQAIVGLVRELAFELAPYVRVNGVGPGGMNSDMRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEE
LIGD_PSEPA
C ALPHA-DEHYDROGENASE (EC -.-.-.-)
LENGTH = 305 COMBINED P-VALUE = 3.21e-21 E-VALUE = 1.1e-19
DIAGRAM: 4-[2]-127-[1]-122
[2]
9.8e-14
QGKVVLITGCSSGIGKATAKHLHKE
+++++ +++++++ ++ +++ + ++
1 MKDFQDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVRAEAVEKAVAELEGLGITAHGIVLDIMDREAYARAAD
[1]
8.0e-15
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++ +++++ +++ + ++++ ++
151 SALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNIAEASRLRPAKYGTSGYVENEESIASLHSIHQ
RFBB_NEIGO
no comment
LENGTH = 346 COMBINED P-VALUE = 3.22e-20 E-VALUE = 1.1e-18
DIAGRAM: 4-[2]-135-[1]-155
[2]
1.7e-13
QGKVVLITGCSSGIGKATAKHLHKE
+++++++++++ ++ + +++ +++
1 MQTEGKKNILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVF
[1]
3.7e-14
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++ +++++++++ ++ ++ +
151 DLFTETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVYGDG
DHCA_HUMAN
no comment
LENGTH = 276 COMBINED P-VALUE = 2.12e-18 E-VALUE = 7e-17
DIAGRAM: 2-[2]-34-[1]-104-[1]-57
[2] [1]
1.1e-15 2.5e-05
QGKVVLITGCSSGIGKATAKHLHKE YSASKFAVRMLTRS
++++++++++++++++++++++ ++++++ +
1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDF
MRREYAPHGIRVN
++++++ + + ++
76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCS
[1]
6.7e-10
YSASKFAVRMLTRSMRREYAPHGIRVN
++ ++ +++ +++ +++ +++++
151 PELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNAC
MAS1_AGRRA
no comment
LENGTH = 476 COMBINED P-VALUE = 2.57e-17 E-VALUE = 8.5e-16
DIAGRAM: 243-[2]-123-[1]-58
[2]
1.3e-14
QGKVVLITGCSSGIGKATAKHLHKE
+++++++ +++++++++++++++++
226 GRVLHFRRGFSHWTVEIHQSPVILVSGSNRGVGKAIAEDLIAHGYRLSLGARKVKDLEVAFGPQDEWLHYARFDA
[1]
2.4e-10
YSASKFAVRMLTRSMRREYAPHGIRVN
+ ++++++ ++++++++ + +++
376 NINSMSGQRVLNPLVGYNMTKHALGGLTKTTQHVGWDRRCAAIDICLGFVATDMSAWTDLIASKDMIQPEDIAKL
PCR_PEA
no comment
LENGTH = 399 COMBINED P-VALUE = 3.93e-17 E-VALUE = 1.3e-15
DIAGRAM: 84-[2]-34-[1]-229
[2] [1]
7.6e-16 8.7e-09
QGKVVLITGCSSGIGKATAKHLHKE YSASKFA
+ ++++++++++++++++++++++ ++ +
76 SSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKSAGLAKENYTIMHLDLASLDS
VRMLTRSMRREYAPHGIRVN
+++++++ +++ +++ + ++
151 VRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVG
ADH_DROME
ALCOHOL DEHYDROGENASE (EC 1.1.1.1)
LENGTH = 255 COMBINED P-VALUE = 2.47e-16 E-VALUE = 8.2e-15
DIAGRAM: 4-[2]-122-[1]-77
[2]
1.1e-11
QGKVVLITGCSSGIGKATAKHLHKE
++++++ + +++++ ++++++++
1 SFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVTFYPYDVTVPIAETTKL
[1]
1.0e-11
YSASKFAVRMLTRSMRREYAPHGIRVN
++ +++++ ++++++++ ++++ +
151 VYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKA
YURA_MYXXA
no comment
LENGTH = 258 COMBINED P-VALUE = 7.99e-14 E-VALUE = 2.6e-12
DIAGRAM: 159-[1]-72
[1]
3.2e-17
YSASKFAVRMLTRSMRREYAPHGIRVN
+++++++++ ++++++++++ ++++++
151 GFRGLPATRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSELTATNNFPMPFLMETHDAVELMGKGIVRG
FABI_ECOLI
no comment
LENGTH = 262 COMBINED P-VALUE = 2.73e-11 E-VALUE = 9e-10
DIAGRAM: 4-[2]-129-[1]-77
[2]
2.4e-06
QGKVVLITGCSSGIGKATAKHLHKE
+++ +++++ ++ + ++ ++ + +
1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF
[1]
7.0e-12
YSASKFAVRMLTRSMRREYAPHGIRVN
++ +++++++ +++++ +++++++++
151 RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDV
CSGA_MYXXA
no comment
LENGTH = 166 COMBINED P-VALUE = 1.81e-09 E-VALUE = 6e-08
DIAGRAM: 87-[1]-52
[1]
2.6e-12
YSASKFAVRMLTRSMRREYAPHGIRVN
+ ++++++ + ++++ ++++++ +
76 SLAANTDGGAYAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDMGGPDATLPAPDSVRGMLRVIDGLNP
Debugging Information
CPU: chromo
Time 0.040000 secs.
mast meme.adh.zoops.4.Linuxx86_64.html -stdout
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
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This information