Version 3.0
Hosted by
Data Submission Form
Use this form to submit motifs to
MAST
to be used in searching a sequence database. Your data will be processed at the
San Diego Supercomputer Center
and the results will be sent to you via e-mail.
Your
e-mail address:
Your
motif
file:
Sample DNA motif
, right click and "save target as" to download
Sequence database
to search--select
one
of the following:
A
MAST database
:
-----Assorted Databases-----
alu
C. elegans (coding)
C. elegans (all cosmids)
D. discoideum (Genbank)
Drosophila
E. coli
epd
est
est (human)
est (mouse)
est (others)
genpept
gss
htgs
kabat
mito
month
nr
pdb
sts
S. cerevisiae
swissprot
vector
-----Genbank Single Organism Databases-----
Aeropyrum pernix K1
Archaeoglobus fulgidus
Aquifex aeolicus
Aquifex aeolicus ece1
Borrelia burgdorferi
Borrelia burgdorferi 11 plasmids
Bacillus subtilis
Chlamydia trachomatis
Chlamydia muridarum
Chlamydia pneumoniae
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae J138
Deinococcus radiodurans R1 chromosome 1
Escherichia coli
Haemophilus influenzae
Helicobacter pylori 26695
Helicobacter pylori strain J99
Mycoplasma genitalium
Methanococcus jannaschii
Methanococcus jannaschii large extrachromosomal element
Methanococcus jannaschii small extrachromosomal element
Mycoplasma pneumoniae
Methanobacterium thermoautotrophicum
Mycobacterium tuberculosis H37Rv
Neisseria meningitidis serogroup B strain MC58
Neisseria meningitidis serogroup A strain Z2491
Pyrococcus abyssi
Pyrococcus horikoshii
Rhizobium sp. NGR234 complete plasmid sequence
Rickettsia prowazekii strain Madrid E
Synechocystis PCC6803
Thermotoga maritima
Treponema pallidum
Ureaplasma urealyticum
Xylella fastidiosa
-----Upstream Sequence Databases-----
B. subtilis (upstream)
E. coli (upstream)
S. cerevisiae (upstream)
Human (upstream)
Mouse (upstream)
Your
FASTA
sequence file (1,000,000 sequence characters maximum):
Sample
DNA sequence, right click and "save target as" to download.
     
OPTIONS
Scale motif display threshold
by sequence length;
recommended
for
nucleotide
searches
Description
of your motifs:
Use individual sequence composition
in
E
- and
p
-value calculation
Display sequences with
E
-value below:
0.01
0.1
1
10
20
50
100
200
500
1000
Text
output format
Rank
of the first match returned:
1
501
1001
1501
2001
2501
3001
3501
4001
4501
5001
5501
6001
6501
7001
7501
8001
8501
9001
9501
10001
Ignore motifs if
E
-value above:
use all motifs
100
50
20
10
5
2
1
.5
.2
.1
.05
.02
.01
.005
.002
.001
1e-5
1e-10
1e-50
1e-100
DNA-ONLY OPTIONS
Search nucleotide
database with protein motifs
Treatment of
reverse complement
strands:
combine with given strand
treat as separate sequence
none
     
Click here for
more information
on
MAST
.
Return to
MEME SYSTEM introduction
.
Developed and maintained by:
Please send comments and questions to:
meme@nbcr.net
.