Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2004/07/16 05:53:30)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE -stdin (nucleotide)
	Database contains 4 sequences, 499297 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.adh.oops.4.Linuxx86_64.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    29   YSASKFAVRMLTRSMAHEYAPHGIRVNCI
	  2    29   KVVLITGCSSGIGKATAKHLHKEGAKVVL

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1
	----- -----
	   2   0.30
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.070 C 0.024 D 0.040 E 0.052 F 0.040 G 0.074 H 0.029 I 0.041 K 0.052 
	L 0.096 M 0.017 N 0.032 P 0.065 Q 0.042 R 0.067 S 0.084 T 0.052 V 0.059 
	W 0.016 Y 0.022 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionFrameE-valueLength
E D A ?
gb|AE003602.1|AE003602 Drosophila melanogaster... b 4.6e-23 297266
E D A ?
gb|AE003567.1|AE003567 Drosophila melanogaster... c 1.3e-12 104808
E D A ?
gb|AE002569.1|AE002569 Drosophila melanogaster... a 0.3 12850
E D A ?
gb|AE002567.1|AE002567 Drosophila melanogaster... a 1.1 84373

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
E S A ?
gb|AE003602.1|AE003602 4.6e-23

+2b
+1b
+2c
+1c
-1b
-2b
-1b
-2b
E S A ?
gb|AE003567.1|AE003567 1.3e-12

-1c
E S A ?
gb|AE002569.1|AE002569 0.3

E S A ?
gb|AE002567.1|AE002567 1.1

SCALE
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
1 75 150 225 300 375 450 525 600 675 750 825 900 975 1050 1125 1200 1275 1350 1425 1500 1575 1650 1725 1800 1875 1950 2025 2100 2175 2250 2325 2400 2475 2550 2625 2700 2775 2850 2925 3000 3075 3150 3225 3300

SECTION III: ANNOTATED SEQUENCES


gi|7296683|gb|AE003602.1|AE003602
E S D ?

Drosophila melanogaster genomic scaffold 142000013386043 section 3 of 8, complete sequence
LENGTH = 297266 COMBINED P-VALUE = 1.14e-23 E-VALUE = 4.6e-23
DIAGRAM: 101665-[+2b]-357-[+1b]-736-[+2c]-357-[+1c]-752-[-1b]-357-[-2b]- 765-[-1b]-357-[-2b]-191224

                                                        [+2b]
                                                        7.5e-13
                                                        K..V..V..L..I..T..G..C..
                                                        +  +  +  +  +  +  +  +
                                                        K..V..V..L..I..T..G..A..
101617 CTTGAGATCCCCTTACATAATTCTGGATCGGATCATGAATTTCGCGGGCAAAGTGGTCCTTATTACGGGAGCA

       
       
       S..S..G..I..G..K..A..T..A..K..H..L..H..K..E..G..A..K..V..V..L..
       +  +  +  +  +     +  +  +  +     +  +  +  +  +  +           +
       S..S..G..I..G..A..A..T..A..I..K..F..A..K..Y..G..A..C..L..A..L..
101690 AGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTACGGCGCCTGTCTGGCTCTCAATGGACGCA

                                                              [+1b]
                                                              1.2e-09
                                                              Y..S..A..S..K..F..
                                                              +        +  +
                                                              Y..N..I..S..K..M..
102055 CATCGTGAACGTGTCCAGTGTCAATGGGATTCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATG

       
       
       A..V..R..M..L..T..R..S..M..A..H..E..Y..A..P..H..G..I..R..V..N..C..I..
       +  +  +     +  +  +  +     +  +  +  +  +     +  +  +  +  +  +  +  +
       G..V..D..Q..F..T..R..C..V..A..L..E..L..A..A..K..G..V..R..V..N..C..V..
102128 GGAGTGGATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGCGTGAACTGCGTGAATC

         [+2c]
         3.2e-11
         K..V..V..L..I..T..G..C..S..S..G..I..G..K..A..T..A..K..H..L..H..K..E..G.
         +  +  +  +  +  +  +  +  +  +  +  +  +     +     +  +  +  +     +     +
         K..V..V..L..I..T..G..A..A..S..G..I..G..A..A..A..A..E..M..F..S..K..L..G.
102931 GCAAAGTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCCGCGGCGGAGATGTTCTCGAAGCTGGG

       
       
       .A..K..V..V..L..
        +           +
       .A..C..L..A..L..
103004 TGCCTGCCTGGCCCTGGTGGATCGGGAGGAGGAGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGC

               [+1c]
               2.6e-13
               Y..S..A..S..K..F..A..V..R..M..L..T..R..S..M..A..H..E..Y..A..P..H.
               +     +  +  +  +  +  +  +     +  +  +  +  +  +  +  +  +  +  +  +
               Y..N..M..S..K..A..A..V..D..Q..F..T..R..S..L..A..L..D..L..G..P..Q.
103369 TGGTGGCCTACAACATGTCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTGGATCTGGGTCCCCA

       
       
       .G..I..R..V..N..C..I..
        +  +  +  +  +  +  +
       .G..V..R..V..N..A..V..
103442 GGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGATTCGCACCAATCTGCAAAAGGCGGGGGGCATGGACGAG

                                                   [-1b]
                                                   1.3e-12
                                                   ..I..C..N..V..R..I..G..H..P..
                                                     +  +  +  +  +  +  +  +  +
                                                   ..V..S..N..V..R..V..G..K..P..
104172 AGTCCACCACGACGCTGCAGCTCGGTGATGATTACGCCGGGATTCACGGAGTTCACACGCACACCCTTGGGAG

       
       
       A..Y..E..H..A..M..S..R..T..L..M..R..V..A..F..K..S..A..S..Y
       +  +  +  +  +     +  +  +  +     +  +  +  +  +  +        +
       A..L..E..L..A..V..C..R..T..F..Q..D..V..A..A..K..S..V..N..Y
104245 CTAGCTCCAGAGCCACGCACCTGGTGAACTGATCCACGGCAGCCTTGGAAACATTGTATGCTAAGACTCCGGG

                                                         [-2b]
                                                         9.6e-09
                                                         ..L..V..V..K..A..G..E..
                                                           +              +
                                                         ..I..T..L..L..G..G..L..
104610 GCCACTATCTGCTCCGCGGTCTCGTTGAGCTTATCCAAATTCCTGCCCACGATGGTGAGCAGGCCTCCCAGTT

       
       
       K..H..L..H..K..A..T..A..K..G..I..G..S..S..C..G..T..I..L..V..V..K
       +  +  +           +        +  +  +  +  +  +  +  +  +  +  +  +  +
       K..A..L..L..V..S..T..G..A..G..I..G..S..S..A..G..T..V..I..I..V..K
104683 TAGCCAAGAGCACCGAAGTACCCGCTCCAATTCCCGAACTGGCTCCGGTCACGATTATAACTTTATCCTTGAA

                                 [-1b]
                                 1.5e-10
                                 ..I..C..N..V..R..I..G..H..P..A..Y..E..H..A..M..
                                   +  +  +  +  +  +  +  +  +  +  +  +  +  +
                                 ..V..A..N..V..R..V..G..K..P..A..L..E..L..A..I..
105486 ATGTCAGTCACAATCACGCCGGGATTCACGGCGTTTACGCGGACTCCTTTGGGGGCCAGTTCCAGGGCTATGC

       
       
       S..R..T..L..M..R..V..A..F..K..S..A..S..Y
       +     +  +     +  +  +  +  +  +        +
       C..A..T..F..Q..D..V..A..A..K..S..V..N..Y
105559 AGGCCGTGAACTGGTCCACCGCTGCCTTAGACACATTGTAGGCCAGGACACCAGGAAAGGCACGCAGTCCACA

                                       [-2b]
                                       4.6e-11
                                       ..L..V..V..K..A..G..E..K..H..L..H..K..A..
                                         +  +           +     +  +  +  +     +
                                       ..I..V..L..L..G..G..L..K..A..L..H..V..A..
105924 GTCTCCTTCAGCTTCTCCTCGTTGCGACCCACGATGACCAGGAGCCCTCCGAGTTTCGCCAAATGGACGGCGG

       
       
       T..A..K..G..I..G..S..S..C..G..T..I..L..V..V..K
          +     +  +  +  +  +  +  +  +  +  +  +  +  +
       A..S..A..G..I..G..S..S..A..G..T..V..I..I..V..K
105997 CACTTGCTCCGATGCCGGAGCTGGCGCCGGTAACAATAATCACTTTGTCCTTGAAGGATGACATCGTGGGGTG



gi|7295475|gb|AE003567.1|AE003567
E S D ?

Drosophila melanogaster genomic scaffold 142000013386050 section 54 of 54, complete sequence
LENGTH = 104808 COMBINED P-VALUE = 3.29e-13 E-VALUE = 1.3e-12
DIAGRAM: 87158-[-1c]-17563

                                                                            [-1c
                                                                            4.6e
                                                                            ..I.
                                                                              +
                                                                            ..L.
87090  AGCCGCTTCATTCGCCGACTCATTCTCGTACAGTGCTTTCGAGAACTTTGTCCTGATGACTCCTGGAGCCAGG

       ]
       -14
       .C..N..V..R..I..G..H..P..A..Y..E..H..A..M..S..R..T..L..M..R..V..A..F..K..
        +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +  +     +
       .C..N..V..R..I..G..E..P..A..L..D..K..A..A..A..K..T..L..G..I..L..A..T..K..
87163  CAGTTGACGCGAATGCCCTCGGGCGCCAGATCCTTGGCGGCTGCCTTGGTCAAGCCAATCAGCGCGGTCTTGC

       
       
       S..A..S..Y
       +     +  +
       S..V..S..Y
87236  TGACGGAATAGGCTCCCAGTAGCTATGCGATTAAGATAACGGAGATAAGCATTGAACAACTGAACCGCAGATA



gi|7289065|gb|AE002569.1|AE002569
E S D ?

Drosophila melanogaster genomic scaffold 142000013385354, complete sequence
LENGTH = 12850 COMBINED P-VALUE = 7.51e-02 E-VALUE = 0.3
DIAGRAM: 12850



gi|7289301|gb|AE002567.1|AE002567
E S D ?

Drosophila melanogaster genomic scaffold 142000013385554, complete sequence
LENGTH = 84373 COMBINED P-VALUE = 2.83e-01 E-VALUE = 1.1
DIAGRAM: 84373



Debugging Information




CPU: chromo
Time 1.300000 secs.

mast meme.adh.oops.4.Linuxx86_64.html -stdin -dna -seqp -stdout

Button Help


E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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