Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2004/07/16 05:53:30)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE /home/meme/meme.3.0.6/tests/INO_up800.s (nucleotide)
	Last updated on Fri Jul 16 15:53:51 2004
	Database contains 7 sequences, 5600 residues

	Scores for positive and reverse complement strands are combined.

	MOTIFS meme.INO_up800.tcm.4.Linuxx86_64.html (nucleotide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    15   TTCACATGCCGCCCC
	  2    21   GGCCACATCGCCACTGGCGGC

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1
	----- -----
	   2   0.27
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.281 C 0.222 G 0.229 T 0.267 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
INO1 sequence of the region up... 4.4e-09 800
D A ?
FAS2 sequence of the region up... 5.2e-07 800
D A ?
FAS1 sequence of the region up... 1.1e-06 800
D A ?
OPI3 sequence of the region up... 1.5e-05 800
D A ?
ACC1 sequence of the region up... 5.8e-05 800
D A ?
CHO1 sequence of the region up... 0.023 800
D A ?
CHO2 sequence of the region up... 0.094 800

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
INO1 4.4e-09

-2
-1
-1
-1
+1
+2
S A ?
FAS2 5.2e-07

+1
+2
S A ?
FAS1 1.1e-06

+2
+1
S A ?
OPI3 1.5e-05

+2
-2
-2
-1
+1
S A ?
ACC1 5.8e-05

-2
+1
S A ?
CHO1 0.023

+1
+1
+1
S A ?
CHO2 0.094

+1
-1
SCALE
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
1 25 50 75 100 125 150 175 200 225 250 275 300 325 350 375 400 425 450 475 500 525 550 575 600 625 650 675 700 725 750 775

SECTION III: ANNOTATED SEQUENCES


INO1
S D ?

sequence of the region upstream from YJL153C
LENGTH = 800 COMBINED P-VALUE = 6.30e-10 E-VALUE = 4.4e-09
DIAGRAM: 365-[-2]-160-[-1]-6-[-1]-34-[-1]-55-[+1]-4-[+2]-74

                                                                      [-2]
                                                                      1.5e-10
                                                                      GCCGCCAGTG
                                                                      ++++++++++
301  GTGACCTGGAAGCTCACCCTGCAGAGGAATCTCAAGCACAGCCTCCAGCATATGATGAAGACGATGAGGCCGGTG

     
     
     GCGATGTGGCC
     +++++++++++
376  CCGATGTGCCCTTGATGGACAACAAACAACAGCTCTCTTCCGGCCGTACTTAGTGATCGGAACGAGCTCTTTATC

                          [-1]                 [-1]
                          5.3e-06              1.7e-06
                          GGGGCGGCATGTGAA      GGGGCGGCATGTGAA
                          +++++++ +++ + +      +++++++ +++++++
526  TGAAATACGTGCCGGTGTTCCGGGGTTGGATGCGGAATCGAAAGTGTTGAATGTGAAATATGCGGAGGCCAAGTA

                     [-1]
                     6.6e-08
                     GGGGCGGCATGTGAA
                     +++++++++++++++
601  TGCGCTTCGGCGGCTAAATGCGGCATGTGAAAAGTATTGTCTATTTTATCTTCATCCTTCTTTCCCAGAATATTG

                [+1]               [+2]
                2.1e-06            2.1e-07
                TTCACATGCCGCCCC    GGCCACATCGCCACTGGCGGC
                +++++++++++++      + ++++ ++ ++  +++++++
676  AACTTATTTAATTCACATGGAGCAGAGAAAGCGCACCTCTGCGTTGGCGGCAATGTTAATTTGAGACGTATATAA



FAS2
S D ?

sequence of the region upstream from YPL231W
LENGTH = 800 COMBINED P-VALUE = 7.49e-08 E-VALUE = 5.2e-07
DIAGRAM: 566-[+1]-131-[+2]-67

                                              [+1]
                                              4.0e-07
                                              TTCACATGCCGCCCC
                                              +++++++++ +++++
526  GCTTAGCAAAATCCAACCATTTTTTTTTTATCTCCCGCGTTTTCACATGCTACCTCATTCGCCTCGTAACGTTAC

                                          [+2]
                                          3.7e-09
                                          GGCCACATCGCCACTGGCGGC
                                          + +++++++++++++++++++
676  TGCCTCATATATAACTTGTTAACTGAAGGTTACACAAGACCACATCACCACTGTCGTGCTTTTCTAATAACCGCT



FAS1
S D ?

sequence of the region upstream from YKL182W
LENGTH = 800 COMBINED P-VALUE = 1.51e-07 E-VALUE = 1.1e-06
DIAGRAM: 52-[+2]-21-[+1]-691
                                                         [+2]
                                                         1.8e-07
                                                         GGCCACATCGCCACTGGCGGC
                                                         +  ++++ + ++ ++++++++
1    CCGGGTTATAGCAGCGTCTGCTCCGCATCACGATACACGAGGTGCAGGCACGGTTCACTACTCCCCTGGCCTCCA

                        [+1]
                        1.7e-08
                        TTCACATGCCGCCCC
                        ++++++++++++++
76   ACAAACGACGGCCAAAAACTTCACATGCCGCCCAGCCAAGCATAATTACGCAACAGCGATCTTTCCGTCGCACAA



OPI3
S D ?

sequence of the region upstream from YJR073C
LENGTH = 800 COMBINED P-VALUE = 2.07e-06 E-VALUE = 1.5e-05
DIAGRAM: 291-[+2]-41-[-2]-126-[-2]-60-[-1]-40-[+1]-149

                                                                       [+2]
                                                                       9.1e-07
                                                                       GGCCACATC
                                                                       + +++ +++
226  ATAACGAGTCCGGTGAACTTGGTTCCTTGCTGAACAGTGTCTTCTTGTAAAGCTTCCCATTTGGTGGTCCCGTTC

                                                          [-2]
                                                          1.7e-06
     GCCACTGGCGGC                                         GCCGCCAGTGGCGATGTGGCC
     +++ +++++ ++                                         + +++++++ ++ +++ +  +
301  AACTCCGTCAGGTCTTCCACGTGGAACTGCCAAGCCTCCTTCAGATCGCTCTTGTCGACCGTCTCCAAGAGATCC

                                                       [-2]
                                                       2.5e-08
                                                       GCCGCCAGTGGCGATGTGGCC
                                                       +++++++++ +++++++ +++
451  TGTGTATCGGGGACTTCTCTTAGAGTAGAAGCGTCTATAAACCCAGGTGGGACGACAGTAGTGATGGCGCCGCCG

                                                             [-1]
                                                             3.4e-06
                                                             GGGGCGGCATGTGAA
                                                             +++ +++++++++ +
526  TATAATTCGACTTCCTTGTTGTTCATGCTTCCTTGATGACCAGGGTAGGTGTCAATGAGAGTGCATGTGGAAAGT

                                         [+1]
                                         2.0e-06
                                         TTCACATGCCGCCCC
                                         ++++ ++++++ +++
601  TGCACCGGTTGTGAAATATGAGAAGCCTTTTCAATCTTCATATGCAAACCCACACATGCATCGTTGGTTTCTGTC



ACC1
S D ?

sequence of the region upstream from YNR016C
LENGTH = 800 COMBINED P-VALUE = 8.22e-06 E-VALUE = 5.8e-05
DIAGRAM: 52-[-2]-9-[+1]-703
                                                         [-2]
                                                         2.5e-07
                                                         GCCGCCAGTGGCGATGTGGCC
                                                         +++ ++++  +++ ++ ++++
1    TATCCAAAGGGGAATGCTTCATCTTGTTGAACAACGCCCAACAATTTCCACTGCCCACCGAATCGTTGCGCCCGT

            [+1]
            8.8e-07
            TTCACATGCCGCCCC
            ++++++++++++  +
76   TAAAATCTTCACATGGCCCGGCCGCGCGCGCGTTGTGCCAACAAGTCGCAGTCGAAATTCAACCGCTCATTGCCA



CHO1
S D ?

sequence of the region upstream from YER026C
LENGTH = 800 COMBINED P-VALUE = 3.22e-03 E-VALUE = 0.023
DIAGRAM: 162-[+1]-433-[+1]-14-[+1]-146

                 [+1]
                 6.4e-06
                 TTCACATGCCGCCCC
                 +++ +++ +++ +++
151  CGTCTGGCGCCCTTCCCATTCCGAACCATGTTATATTGAACCATCTGGCGACAAGCAGTATTAAGCATAATACAT

               [+1]                         [+1]
               4.5e-07                      1.5e-06
               TTCACATGCCGCCCC              TTCACATGCCGCCCC
               ++++++ ++++++++              +++++++++++++ +
601  ACTTTGAACGTTCACACGGCACCCTCACGCCTTTGAGCTTTCACATGGACCCATCTAAAGATGAAGATCCGTATT



CHO2
S D ?

sequence of the region upstream from YGR157W
LENGTH = 800 COMBINED P-VALUE = 1.35e-02 E-VALUE = 0.094
DIAGRAM: 353-[+1]-109-[-1]-308

                                                          [+1]
                                                          1.2e-06
                                                          TTCACATGCCGCCCC
                                                          +++ +++++++++++
301  ATATATATTTTTGCCTTGGTTTAAATTGGTCAAGACAGTCAATTGCCACACTTTTCTCATGCCGCATTCATTATT

                                [-1]
                                1.2e-05
                                GGGGCGGCATGTGAA
                                +++  +++++ ++++
451  GTGGATCTCCGACACATGTGAATTTATAAGTAGGCATATGAAAATACAGATTCTTTCCACTGTGTTCCCTTTTAT

Debugging Information




CPU: chromo
Time 0.020000 secs.

mast meme.INO_up800.tcm.4.Linuxx86_64.html -stdout

Button Help


E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
?
This information

Go to top