Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2004/07/16 05:53:30)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE /home/meme/meme.3.0.6/tests/lipocalin.s (peptide)
	Last updated on Fri Jul 16 15:53:57 2004
	Database contains 5 sequences, 903 residues

	MOTIFS meme.lipocalin.tcm.4.Linuxx86_64.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    28   HDGRCPDVKPVDNFDWSRFAGTWWEIAK
	  2    42   VFWVLATDNKNYIIGYNCDYDPDKKGHQDHVWILSRSKVLEG

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1
	----- -----
	   2   0.23
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
BBP_PIEBR 4.6e-73 173
D A ?
ICYA_MANSE 1.4e-70 189
D A ?
RETB_BOVIN 3.8e-18 183
D A ?
LACB_BOVIN 0.037 178
D A ?
MUP2_MOUSE 0.3 180

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
BBP_PIEBR 4.6e-73

1
2
S A ?
ICYA_MANSE 1.4e-70

1
2
S A ?
RETB_BOVIN 3.8e-18

1
S A ?
LACB_BOVIN 0.037

1
S A ?
MUP2_MOUSE 0.3

SCALE
| | | | | | | |
1 25 50 75 100 125 150 175

SECTION III: ANNOTATED SEQUENCES


BBP_PIEBR
S D ?


LENGTH = 173 COMBINED P-VALUE = 9.18e-74 E-VALUE = 4.6e-73
DIAGRAM: 3-[1]-66-[2]-34
        [1]
        1.9e-32
        HDGRCPDVKPVDNFDWSRFAGTWWEIAK
        ++++++++++++++++++++++++++++
1    NVYHDGACPEVKPVDNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEGTAYP

                           [2]
                           1.4e-48
                           VFWVLATDNKNYIIGYNCDYDPDKKGHQDHVWILSRSKVLEG
                           ++++++++++++++++++++++++++++++++++++++++++
76   VGDSKIGKIYHKLTYGGVTKENVFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTGEAKTAVENYLI



ICYA_MANSE
S D ?


LENGTH = 189 COMBINED P-VALUE = 2.81e-71 E-VALUE = 1.4e-70
DIAGRAM: 4-[1]-69-[2]-46
         [1]
         2.6e-29
         HDGRCPDVKPVDNFDWSRFAGTWWEIAK
         ++++++++++++++++++++++++++++
1    GDIFYPGYCPDVKPVNDFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLE

                               [2]
                               2.6e-49
                               VFWVLATDNKNYIIGYNCDYDPDKKGHQDHVWILSRSKVLEG
                               ++++++++++++++++++++++++++++++++++++++++++
76   IAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVD



RETB_BOVIN
S D ?


LENGTH = 183 COMBINED P-VALUE = 7.60e-19 E-VALUE = 3.8e-18
DIAGRAM: 1-[1]-154
      [1]
      8.9e-22
      HDGRCPDVKPVDNFDWSRFAGTWWEIAK
      ++++ +++++++++++++++++++++++
1    ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG



LACB_BOVIN
S D ?


LENGTH = 178 COMBINED P-VALUE = 7.40e-03 E-VALUE = 0.037
DIAGRAM: 12-[1]-138
                 [1]
                 5.0e-05
                 HDGRCPDVKPVDNFDWSRFAGTWWEIAK
                    +          +    +++++  +
1    MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ



MUP2_MOUSE
S D ?


LENGTH = 180 COMBINED P-VALUE = 6.09e-02 E-VALUE = 0.3
DIAGRAM: 180



Debugging Information




CPU: chromo
Time 0.060000 secs.

mast meme.lipocalin.tcm.4.Linuxx86_64.html -stdout

Button Help


E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
?
This information

Go to top