Dataset and Motifs High-scoring Sequences Motif Diagrams Annotated Sequences Debugging Information


MAST - Motif Alignment and Search Tool

MAST version 3.0 (Release date: 2004/07/16 05:53:30)

For further information on how to interpret these results or to get a copy of the MAST software please access http://meme.sdsc.edu.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches", Bioinformatics, 14(48-54), 1998.


DATABASE AND MOTIFS

	DATABASE /home/meme/meme.3.0.6/tests/lipocalin.s (peptide)
	Last updated on Fri Jul 16 15:53:57 2004
	Database contains 5 sequences, 903 residues

	MOTIFS meme.lipocalin.oops.4.Linuxx86_64.html (peptide)
	MOTIF WIDTH BEST POSSIBLE MATCH
	----- ----- -------------------
	  1    19   PMRNFDIQKFAGTWHEIAK
	  2    20   NNVFWILDTDYKNYLIQYMC

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1
	----- -----
	   2   0.24
	No overly similar pairs (correlation > 0.60) found.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 

SECTION I: HIGH-SCORING SEQUENCES

LinksSequence NameDescriptionE-valueLength
D A ?
ICYA_MANSE 5.3e-31 189
D A ?
BBP_PIEBR 7.5e-30 173
D A ?
RETB_BOVIN 5e-26 183
D A ?
MUP2_MOUSE 2.5e-21 180
D A ?
LACB_BOVIN 6.5e-21 178

SECTION II: MOTIF DIAGRAMS


LinksNameExpect   Motifs
S A ?
ICYA_MANSE 5.3e-31

1
2
S A ?
BBP_PIEBR 7.5e-30

1
2
S A ?
RETB_BOVIN 5e-26

1
2
S A ?
MUP2_MOUSE 2.5e-21

1
2
S A ?
LACB_BOVIN 6.5e-21

1
2
SCALE
| | | | | | | |
1 25 50 75 100 125 150 175

SECTION III: ANNOTATED SEQUENCES


ICYA_MANSE
S D ?


LENGTH = 189 COMBINED P-VALUE = 1.05e-31 E-VALUE = 5.3e-31
DIAGRAM: 13-[1]-67-[2]-70
                  [1]
                  1.0e-18
                  PMRNFDIQKFAGTWHEIAK
                  +++++++++++++++++++
1    GDIFYPGYCPDVKPVNDFDLSAFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLE

                             [2]
                             4.6e-20
                             NNVFWILDTDYKNYLIQYMC
                             + ++++++++++++++++++
76   IAPDAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVD



BBP_PIEBR
S D ?


LENGTH = 173 COMBINED P-VALUE = 1.50e-30 E-VALUE = 7.5e-30
DIAGRAM: 12-[1]-64-[2]-58
                 [1]
                 6.8e-18
                 PMRNFDIQKFAGTWHEIAK
                 +++++++++++++++++++
1    NVYHDGACPEVKPVDNFDWSNYHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEGTAYP

                         [2]
                         1.2e-19
                         NNVFWILDTDYKNYLIQYMC
                         ++++++++++++++++++++
76   VGDSKIGKIYHKLTYGGVTKENVFNVLSTDNKNYIIGYYCKYDEDKKGHQDFVWVLSRSKVLTGEAKTAVENYLI



RETB_BOVIN
S D ?


LENGTH = 183 COMBINED P-VALUE = 9.99e-27 E-VALUE = 5e-26
DIAGRAM: 10-[1]-71-[2]-63
               [1]
               1.5e-16
               PMRNFDIQKFAGTWHEIAK
               ++++++ ++++++++++++
1    ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVG

                              [2]
                              3.7e-17
                              NNVFWILDTDYKNYLIQYMC
                              + ++++++++++++++++++
76   TFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPEVQK



MUP2_MOUSE
S D ?


LENGTH = 180 COMBINED P-VALUE = 5.04e-22 E-VALUE = 2.5e-21
DIAGRAM: 23-[1]-62-[2]-56
                            [1]
                            3.2e-14
                            PMRNFDIQKFAGTWHEIAK
                            +++++ +++++++++++++
1    MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFH

                                  [2]
                                  1.1e-14
                                  NNVFWILDTDYKNYLIQYMC
                                  +++++++++++++++++++
76   TVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKE



LACB_BOVIN
S D ?


LENGTH = 178 COMBINED P-VALUE = 1.29e-21 E-VALUE = 6.5e-21
DIAGRAM: 21-[1]-64-[2]-54
                          [1]
                          6.2e-15
                          PMRNFDIQKFAGTWHEIAK
                          ++++ ++++++++++++++
1    MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQ

                                  [2]
                                  1.5e-13
                                  NNVFWILDTDYKNYLIQYMC
                                  ++++ +++++++ ++++++
76   KWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALE

Debugging Information




CPU: chromo
Time 0.020000 secs.

mast meme.lipocalin.oops.4.Linuxx86_64.html -stdout

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E
Links to Entrez database at NCBI
S
Links to sequence scores (section I)
D
Links to motif diagrams (section II)
A
Links to sequence/motif annotated alignments (section III)
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