Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.10.0, (Release date: Tue May 06 16:46:04 2014 +1000)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE
memechip_example_output_files/sample-dna-Klf1.fa
Database contains
904
sequences,
452000
residues
MOTIFS JASPAR_CORE_2009.meme (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
MA0001.1 | 10 | CCATAAATAG |
MA0002.1 | 11 | TATTGTGGTTA |
MA0002.2 | 11 | GTCTGTGGTTT |
MA0003.1 | 9 | GCCCGGGGG |
MA0004.1 | 6 | CACGTG |
MA0005.1 | 11 | CCAAATTTGGT |
MA0006.1 | 6 | TGCGTG |
MA0007.1 | 22 | ATAAGAACATCGTGTACCCGCC |
MA0008.1 | 8 | CAATTATT |
MA0009.1 | 11 | CTAGGTGTGAA |
MA0010.1 | 14 | GTAATAAACAAATC |
MA0011.1 | 8 | TACTATTT |
MA0012.1 | 11 | TAAACTAAAAG |
MA0013.1 | 11 | TAGTAAACAAA |
MA0014.1 | 20 | AGAGCACTGAAGCGTAACGG |
MA0015.1 | 10 | GTATATATAC |
MA0016.1 | 10 | GGGGTCACGG |
MA0017.1 | 14 | TGACCTTTGAACCT |
MA0018.1 | 12 | CCTGGTGACGTC |
MA0018.2 | 8 | TGACGTCA |
MA0019.1 | 12 | AGATGCAATCCC |
MA0020.1 | 6 | AAAGCA |
MA0021.1 | 6 | AAAGCG |
MA0022.1 | 12 | GGGGTTTTTCCG |
MA0023.1 | 10 | GGGGTTTTCC |
MA0024.1 | 8 | TTTGGCGC |
MA0025.1 | 11 | TTATGTAACAT |
MA0026.1 | 7 | CCGGAAG |
MA0027.1 | 11 | AAGTAGTGTTC |
MA0028.1 | 10 | GAGCCGGAAG |
MA0029.1 | 14 | AAGATAAGATAATA |
MA0030.1 | 14 | CAAACGTAAACAAT |
MA0031.1 | 8 | GTAAACAT |
MA0032.1 | 8 | GGTAAGTA |
MA0033.1 | 8 | TATACATA |
MA0034.1 | 10 | GACAACCGCC |
MA0035.1 | 6 | GGATGG |
MA0035.2 | 11 | ACAGATAAGAA |
MA0036.1 | 5 | GGATA |
MA0037.1 | 6 | AGATAG |
MA0038.1 | 10 | CAAATCACTG |
MA0039.1 | 10 | TAAAGGAAGG |
MA0039.2 | 10 | TGGGTGGGGC |
MA0040.1 | 11 | TATTGTTTATT |
MA0041.1 | 12 | GAATGTTTGTTT |
MA0042.1 | 12 | GGATGTTTGTTT |
MA0043.1 | 12 | GGTTACGTAATT |
MA0044.1 | 9 | GTTGTATTC |
MA00445.1 | 11 | TCCATTGTTCT |
MA0045.1 | 16 | CAACAAATGGAAAAAC |
MA0046.1 | 14 | GGTTAATAATTAAC |
MA0047.1 | 12 | CAATATTTACTT |
MA0047.2 | 12 | TGTTTACTTAGG |
MA0048.1 | 12 | GCGCAGCTGCGT |
MA0049.1 | 10 | GCATAAAAAA |
MA0050.1 | 12 | GAAAGTGAAACC |
MA0051.1 | 18 | GGAAAGTGAAAGCAAAAC |
MA0052.1 | 10 | CTATTTATAG |
MA0053.1 | 5 | AAAGC |
MA0054.1 | 9 | TAACCGTTT |
MA0055.1 | 12 | CAGCAGCTGCTG |
MA0056.1 | 6 | TGGGGA |
MA0057.1 | 10 | GTAGGGGGAA |
MA0058.1 | 10 | AACCACGTGA |
MA0059.1 | 11 | GAGCACGTGGT |
MA0060.1 | 16 | CTCAGCCAATCAGCGC |
MA0061.1 | 10 | GGGAATTTCC |
MA0062.1 | 10 | ACCGGAAGAG |
MA0062.2 | 11 | CCGGAAGTGGC |
MA0063.1 | 7 | TTAATTG |
MA0064.1 | 5 | AAAGC |
MA0065.1 | 20 | TTAGGGGTCAAAGGTCATCT |
MA0065.2 | 15 | GTAGGGCAAAGGTCA |
MA0066.1 | 20 | GTAGGTCACGGTGACCTACT |
MA0067.1 | 8 | AGTCACGG |
MA0068.1 | 30 | GAAAAATTTCCAATACTCCACTCCCCCCCC |
MA0069.1 | 14 | TTCACGCATGAGTT |
MA0070.1 | 12 | CCATCAATCAAA |
MA0071.1 | 10 | ATCAAGGTCA |
MA0072.1 | 14 | TATAAGTAGGTCAA |
MA0073.1 | 20 | CCCCAAACCACCCCCCCCCA |
MA0074.1 | 15 | GGGTCATCGAGTTCA |
MA0075.1 | 5 | AATTA |
MA0076.1 | 9 | ACCGGAAGT |
MA0077.1 | 9 | GAACAATGG |
MA0078.1 | 9 | TTCATTGTC |
MA0079.1 | 10 | GGGGCGGGGT |
MA0079.2 | 10 | CCCCGCCCCC |
MA0080.1 | 6 | CGGAAG |
MA0080.2 | 7 | AGGAAGT |
MA0081.1 | 7 | AGAGGAA |
MA0082.1 | 14 | CCAAAAATGGAAAT |
MA0083.1 | 12 | GCCCATATATGG |
MA0084.1 | 9 | GTAAACAAT |
MA0085.1 | 16 | TTGTGGGAAACGAGAT |
MA0086.1 | 6 | CAGGTG |
MA0087.1 | 7 | TAACAAT |
MA0088.1 | 20 | GATTTCCCATAATGCCTTGC |
MA0089.1 | 6 | CATGAC |
MA0090.1 | 12 | CACATTCCTCCG |
MA0091.1 | 12 | CGACCATCTGTT |
MA0092.1 | 10 | GGTCTGGCAT |
MA0093.1 | 7 | CACGTGG |
MA0094.1 | 4 | TAAT |
MA0094.2 | 8 | TTTAATTA |
MA0095.1 | 6 | GCCATC |
MA0096.1 | 7 | ATGACGT |
MA0097.1 | 12 | GATGACGTGGCC |
MA0098.1 | 6 | TTTCCG |
MA0099.1 | 8 | GTGAGTCA |
MA0099.2 | 7 | TGACTCA |
MA0100.1 | 8 | GGCCGTTG |
MA0101.1 | 10 | GGGGATTTCC |
MA0102.1 | 12 | TTTCGCAATCTT |
MA0102.2 | 9 | TTTCGCAAT |
MA0103.1 | 6 | CACCTG |
MA0104.1 | 6 | CACGTG |
MA0104.2 | 10 | CGCACGTGGC |
MA0105.1 | 11 | GGGGATTCCCC |
MA0106.1 | 20 | CCGGACATGCCCGGGCATGT |
MA0107.1 | 10 | GGGAATTTCC |
MA0108.1 | 15 | GTATAAAAGGCGGGG |
MA0108.2 | 15 | GTATAAAAGGCGGGG |
MA0109.1 | 10 | AACCTTATAT |
MA0110.1 | 9 | CCAATTATT |
MA0111.1 | 11 | AGGGTAACAGC |
MA0112.1 | 18 | CCAGGTCACCGTGACCCC |
MA0112.2 | 20 | GGCCCAGGTCACCCTGACCT |
MA0113.1 | 18 | GGGAACATTATGTCCTAT |
MA0114.1 | 13 | AGGCCAAAGGTCA |
MA0115.1 | 17 | AAAGGTCAAAGGTCAAC |
MA0116.1 | 15 | GGCACCCAGGGGTGC |
MA0117.1 | 8 | GCTGACGG |
MA0118.1 | 9 | TGGGGGTTC |
MA0119.1 | 14 | TGGCACCATGCCAA |
MA0120.1 | 12 | TTTTCCTTTTCG |
MA0121.1 | 8 | AGATCCGC |
MA0122.1 | 9 | TTAAGTGGA |
MA0123.1 | 10 | CGGTGCCCCC |
MA0124.1 | 7 | ATACTTA |
MA0125.1 | 8 | TAATTGGT |
MA0126.1 | 9 | AGTAACAGT |
MA0127.1 | 10 | ACTTCTTATT |
MA0128.1 | 8 | ACACGTGG |
MA0129.1 | 7 | TACGTCA |
MA0130.1 | 6 | ATCCAC |
MA0131.1 | 10 | TAACGTCCGC |
MA0132.1 | 6 | CTAATT |
MA0133.1 | 7 | ACAACAC |
MA0135.1 | 13 | AAATTAATTAATC |
MA0136.1 | 9 | TACTTCCTT |
MA0137.1 | 14 | GGAAAATGAAACTG |
MA0137.2 | 15 | CATTTCCCGGAAACC |
MA0138.1 | 19 | GCGCTGTCCATGGTGCTGA |
MA0138.2 | 21 | TTCAGCACCATGGACAGCGCC |
MA0139.1 | 19 | TGGCCACCAGGGGGCGCTA |
MA0140.1 | 18 | CTGGTGGGGACAGATAAG |
MA0141.1 | 12 | AGCTCAAGGTCA |
MA0142.1 | 15 | CTTTGTTATGCAAAT |
MA0143.1 | 15 | CCTTTGTTATGCAAA |
MA0144.1 | 10 | TTCCAGGAAG |
MA0145.1 | 14 | CCAGTTCAAACCAG |
MA0146.1 | 14 | GGGGCCGAGGCCTG |
MA0147.1 | 10 | CGCACGTGGC |
MA0148.1 | 11 | TGTTTACTTTG |
MA0149.1 | 18 | GGAAGGAAGGAAGGAAGG |
MA0150.1 | 11 | ATGACTCAGCA |
MA0151.1 | 6 | ATTAAA |
MA0152.1 | 7 | TTTTCCA |
MA0153.1 | 12 | TTAATATTTAAC |
MA0154.1 | 10 | ACCCAAGGGA |
MA0155.1 | 12 | TGTCAGGGGGCG |
MA0156.1 | 8 | CAGGAAAT |
MA0157.1 | 8 | TGTAAACA |
MA0158.1 | 8 | CACTAATT |
MA0159.1 | 17 | AGGTCATGGAGAGGTCA |
MA0160.1 | 8 | AAGGTCAC |
MA0161.1 | 6 | TTGGCA |
MA0162.1 | 11 | TGCGTGGGCGT |
MA0163.1 | 14 | GGGGCCCAAGGGGG |
MA0164.1 | 7 | CAAGCTT |
MA0165.1 | 7 | TTTATGA |
MA0166.1 | 7 | TTAATGA |
MA0167.1 | 7 | TTAATTA |
MA0168.1 | 7 | TTAATTG |
MA0169.1 | 7 | TTAATTG |
MA0170.1 | 7 | TTAATTA |
MA0171.1 | 7 | TTAATTG |
MA0172.1 | 7 | TTAATTA |
MA0173.1 | 7 | TTAACAT |
MA0174.1 | 7 | TTTATTA |
MA0175.1 | 7 | TTAATTG |
MA0176.1 | 7 | TTAATTA |
MA0177.1 | 7 | TTAATTA |
MA0178.1 | 7 | TTAATTA |
MA0179.1 | 7 | TTAATTA |
MA0180.1 | 9 | TTTAATTAG |
MA0181.1 | 7 | TTAATTA |
MA0182.1 | 7 | TTTATTA |
MA0183.1 | 8 | TTTAATTA |
MA0184.1 | 7 | CTAATTA |
MA0185.1 | 6 | TTCGTG |
MA0186.1 | 7 | TTAATGA |
MA0187.1 | 7 | TAATTAC |
MA0188.1 | 7 | CCAATTA |
MA0189.1 | 7 | TTAATTA |
MA0190.1 | 6 | TAATCC |
MA0191.1 | 7 | TTAATTA |
MA0192.1 | 7 | TTAATTG |
MA0193.1 | 7 | CTACCAA |
MA0194.1 | 7 | TTAATTA |
MA0195.1 | 7 | TTAATTA |
MA0196.1 | 7 | TTAATTG |
MA0197.1 | 8 | TTTAATTA |
MA0198.1 | 7 | CTAATTA |
MA0199.1 | 5 | TGATA |
MA0200.1 | 7 | CTAATTA |
MA0201.1 | 7 | TTAATCC |
MA0202.1 | 7 | CTAATTA |
MA0203.1 | 7 | TTAATGA |
MA0204.1 | 6 | TGATAC |
MA0205.1 | 10 | TTGCTCTCTC |
MA0206.1 | 7 | TTAATTA |
MA0207.1 | 6 | TGACAG |
MA0208.1 | 7 | TAATTAA |
MA0209.1 | 7 | CTAATTA |
MA0210.1 | 5 | TAACA |
MA0211.1 | 7 | TTAAGTG |
MA0212.1 | 6 | TAATCC |
MA0213.1 | 8 | CTGGCGCC |
MA0214.1 | 7 | TTAATTG |
MA0215.1 | 7 | TTAATGA |
MA0216.1 | 7 | TTTATTG |
MA0217.1 | 5 | TAACA |
MA0218.1 | 6 | TTGAAC |
MA0219.1 | 7 | TTAATGA |
MA0220.1 | 7 | TTAATTA |
MA0221.1 | 7 | CTAATGA |
MA0222.1 | 8 | TTTTGACA |
MA0223.1 | 7 | GTAATTA |
MA0224.1 | 7 | GTAATTA |
MA0225.1 | 7 | TTAATTA |
MA0226.1 | 7 | TTAATTA |
MA0227.1 | 6 | TGACAG |
MA0228.1 | 7 | CTAATTA |
MA0229.1 | 8 | TCTAATTA |
MA0230.1 | 7 | TTAATTA |
MA0231.1 | 6 | TAACTA |
MA0232.1 | 6 | TAATTA |
MA0233.1 | 5 | AAACA |
MA0234.1 | 6 | TAATCC |
MA0235.1 | 7 | TTGATTT |
MA0236.1 | 7 | TTAATTA |
MA0237.1 | 8 | CTTTGATC |
MA0238.1 | 7 | TTAATTA |
MA0239.1 | 9 | AGTAACAGT |
MA0240.1 | 7 | TTAATTA |
MA0241.1 | 7 | CTAATTA |
MA0242.1 | 9 | TAACCGCAA |
MA0243.1 | 12 | GACATTCCTCGA |
MA0244.1 | 8 | ATTGCAAA |
MA0245.1 | 7 | TTAATTA |
MA0246.1 | 6 | TGATAC |
MA0247.1 | 8 | CTCAAGTG |
MA0248.1 | 7 | TTAATTG |
MA0249.1 | 12 | TCGCATATGTTG |
MA0250.1 | 7 | TTAATTG |
MA0251.1 | 7 | TTAATTA |
MA0252.1 | 6 | TGACAG |
MA0253.1 | 9 | TTTCAAGTG |
MA0254.1 | 6 | TATGCA |
MA0255.1 | 10 | TTGAGTGATT |
MA0256.1 | 7 | CTAATGA |
MA0257.1 | 7 | TTAATTA |
MA0258.1 | 18 | CAAGGTCACGGTGACCTG |
MA0259.1 | 8 | GGACGTGC |
MA0260.1 | 6 | GAAACC |
MA0261.1 | 6 | GAACAC |
MA0262.1 | 13 | AATGTTGCGAATT |
MA0263.1 | 14 | ATTGGCTTCGTTAA |
MA0264.1 | 11 | ACCACTTGAAA |
MA0265.1 | 16 | TCGTATAAAGTGATAT |
MA0266.1 | 7 | CTCTAGA |
MA0267.1 | 7 | ACCAGCA |
MA0268.1 | 7 | ACCCCAC |
MA0269.1 | 21 | TTACATATTGCACCCGATTGG |
MA0270.1 | 8 | CACACCCC |
MA0271.1 | 6 | AGACGC |
MA0272.1 | 8 | GTGACTCT |
MA0273.1 | 21 | GATAATTCTCGGCAAGTATGT |
MA0274.1 | 8 | ACTTGAAT |
MA0275.1 | 6 | CCGGAA |
MA0276.1 | 10 | CCGGATCGGG |
MA0277.1 | 9 | AAAAAGAAA |
MA0278.1 | 21 | GCACAGCCAGAGTCAAGTCAA |
MA0279.1 | 10 | ATTAGTAAGC |
MA0280.1 | 6 | CCGGAA |
MA0281.1 | 8 | GCACGTGA |
MA0282.1 | 8 | CTCGGAAA |
MA0283.1 | 8 | GGCGGAGA |
MA0284.1 | 10 | TTACGTAATC |
MA0285.1 | 9 | CTAAGCCAC |
MA0286.1 | 9 | ATGACGTAA |
MA0287.1 | 11 | CAGCAAAAATG |
MA0288.1 | 9 | TGACACATT |
MA0289.1 | 7 | CGATAAG |
MA0290.1 | 19 | AAAAGCCGCGGGCGGGATT |
MA0291.1 | 9 | AATGTGCGC |
MA0292.1 | 7 | CTCCGGA |
MA0293.1 | 11 | AAAGATCTAAA |
MA0294.1 | 9 | CGGAAAAAT |
MA0295.1 | 8 | GACGCAAA |
MA0296.1 | 20 | TGAATTGTAAACAAAGAGGA |
MA0297.1 | 7 | GTAAACA |
MA0298.1 | 6 | CTATCA |
MA0299.1 | 15 | CGGGGAACAGTACTC |
MA0300.1 | 8 | CCGATAAG |
MA0301.1 | 9 | AGATCTACA |
MA0302.1 | 11 | AAAGATCTAAA |
MA0303.1 | 21 | CAAGGGATGAGTCATACTTCA |
MA0304.1 | 8 | TGGAAGCC |
MA0305.1 | 7 | GCTTCCT |
MA0306.1 | 9 | ACCCCTAAA |
MA0307.1 | 5 | GATAA |
MA0308.1 | 21 | ATTAAAAAACTCCGGAGTATA |
MA0309.1 | 8 | TGATAAGA |
MA0310.1 | 8 | GACACGTG |
MA0311.1 | 5 | CGGAA |
MA0312.1 | 8 | CGGAGATA |
MA0313.1 | 5 | TTGGT |
MA0314.1 | 15 | TCTGATTGGTTCAGA |
MA0315.1 | 15 | ACCAATCAGAGGCGA |
MA0316.1 | 15 | TGGGATCTGATTGGT |
MA0317.1 | 8 | ATAAACAA |
MA0318.1 | 8 | CATGTAAT |
MA0319.1 | 8 | ATGGAACA |
MA0320.1 | 8 | CCGCCGAG |
MA0321.1 | 9 | GCATGTGAA |
MA0322.1 | 9 | GCATGTGAA |
MA0323.1 | 15 | AAGCCGGAAGCGGGG |
MA0324.1 | 10 | CCGTTACCGG |
MA0325.1 | 8 | CCGGAATT |
MA0326.1 | 8 | TTTGCTCA |
MA0327.1 | 7 | ACACAAT |
MA0328.1 | 9 | CATGTAATT |
MA0329.1 | 7 | ACGCGTA |
MA0330.1 | 7 | ACGCGTT |
MA0331.1 | 12 | CCCAATTAGGAA |
MA0332.1 | 6 | CTGTGG |
MA0333.1 | 9 | AGTGTGGCG |
MA0334.1 | 7 | CGCCACA |
MA0335.1 | 8 | AACTGTGG |
MA0336.1 | 21 | AGGACTATAGAACACTCTAAA |
MA0337.1 | 7 | CCCCCGC |
MA0338.1 | 7 | CCCCGCA |
MA0339.1 | 7 | CCCCGCA |
MA0340.1 | 6 | TAGGTA |
MA0341.1 | 5 | AGGGG |
MA0342.1 | 5 | AGGGG |
MA0343.1 | 21 | TTTCCGGCCACAAAAACGCAA |
MA0344.1 | 8 | GCCGGGGA |
MA0345.1 | 21 | ATGACCTATATATAAAAATGA |
MA0346.1 | 20 | TTTATTTATATATAATATGA |
MA0347.1 | 20 | CTAGATCAGGGTCCATCGCA |
MA0348.1 | 9 | TCGGAGATA |
MA0349.1 | 7 | CGAACCG |
MA0350.1 | 21 | AGGCACAGCTCATCGCGTTTT |
MA0351.1 | 21 | TTCTGCACCTCATCGCATCCT |
MA0352.1 | 8 | TCCGCGGA |
MA0353.1 | 8 | TCCGCGGA |
MA0354.1 | 8 | ACGGAGAT |
MA0355.1 | 10 | ACCTGCAGCA |
MA0356.1 | 6 | ATAATA |
MA0357.1 | 8 | GCACGTGC |
MA0358.1 | 8 | CCCGGGAA |
MA0359.1 | 10 | CACCCATACA |
MA0360.1 | 8 | TGCGGAAC |
MA0361.1 | 7 | CGGCCGA |
MA0362.1 | 7 | CTCGGGG |
MA0363.1 | 9 | GTTACCCGG |
MA0364.1 | 7 | CCCCTGA |
MA0365.1 | 8 | GGTTGCTA |
MA0366.1 | 5 | AGGGG |
MA0367.1 | 11 | AATTTTTCCGG |
MA0368.1 | 7 | CGCCAAG |
MA0369.1 | 18 | AGTTCTATAAATAGATTC |
MA0370.1 | 10 | TCCAAAGGAA |
MA0371.1 | 12 | TCCATTGTTCTC |
MA0372.1 | 8 | ACCCCTAA |
MA0373.1 | 7 | GGTGGCG |
MA0374.1 | 7 | CGCGCGG |
MA0375.1 | 8 | CGCGCGCG |
MA0376.1 | 20 | ATATTAGCACGTGCTTAGTC |
MA0377.1 | 21 | TAGAGAATAGAAGAAATAAAA |
MA0378.1 | 21 | ATTGAAAAAAATTTTCTACGG |
MA0379.1 | 5 | ATATA |
MA0380.1 | 7 | CTCCGGA |
MA0381.1 | 6 | GGCCAT |
MA0382.1 | 8 | ACGTAATG |
MA0383.1 | 21 | TTACCTATAATTAAATTAGCA |
MA0384.1 | 11 | TGGTAGCGCCG |
MA0385.1 | 11 | ACCTGCAGGCA |
MA0386.1 | 21 | GACTAGATATATATATTCGAT |
MA0387.1 | 10 | AATTAAAGAA |
MA0388.1 | 8 | GAAATCAA |
MA0389.1 | 8 | AGATCTAC |
MA0390.1 | 21 | GTCCAAAATTTTTCACTCTGG |
MA0391.1 | 7 | CTCGGAA |
MA0392.1 | 8 | CGGTGTTA |
MA0393.1 | 7 | TGAAACA |
MA0394.1 | 8 | TGCGGCGC |
MA0395.1 | 20 | TGATCGGCGCCGCACGACGA |
MA0396.1 | 9 | GCTAGCGCA |
MA0397.1 | 9 | GATAGCGCA |
MA0398.1 | 9 | AAAATTTTT |
MA0399.1 | 7 | CGCGGGG |
MA0400.1 | 20 | ATGATAAACTCCGAAAATTT |
MA0401.1 | 8 | ACGCGAAA |
MA0402.1 | 8 | TGCTGGTT |
MA0403.1 | 8 | AACCCTAA |
MA0404.1 | 8 | CGGATCCG |
MA0405.1 | 8 | GCGGACAT |
MA0406.1 | 8 | ACATTCCC |
MA0407.1 | 15 | GGAAACTCTAAGAAC |
MA0408.1 | 8 | CTGTCAAA |
MA0409.1 | 7 | CACGTGA |
MA0410.1 | 8 | CGGCGGGA |
MA0411.1 | 7 | TATACGA |
MA0412.1 | 13 | TCGGCGGCTAATT |
MA0413.1 | 20 | AAATTCCCCCTGAATTTGTG |
MA0414.1 | 7 | CTCGAGA |
MA0415.1 | 20 | ATTTGCTTACGTAAGCTCGT |
MA0416.1 | 8 | ATTACGTA |
MA0417.1 | 6 | AAGCAT |
MA0418.1 | 20 | GGTCTGATTACGTAAGCGAC |
MA0419.1 | 11 | ATTAGTAAGCA |
MA0420.1 | 8 | ACCGGAAC |
MA0421.1 | 10 | TTTACCCGGC |
MA0422.1 | 10 | CCGGAGATAA |
MA0423.1 | 9 | ACCCCTATT |
MA0424.1 | 8 | CTCCGGAA |
MA0425.1 | 14 | ACCCCACTTTTTTA |
MA0426.1 | 6 | TAATTG |
MA0427.1 | 11 | AGCTCCGGAGA |
MA0428.1 | 9 | AACGGAAAT |
MA0429.1 | 7 | CGGCCGA |
MA0430.1 | 8 | CCGGAGTT |
MA0431.1 | 9 | ACCCCGCAC |
MA0432.1 | 8 | TCGGAGAT |
MA0433.1 | 8 | TTAATTAA |
MA0434.1 | 9 | TGTAGATCA |
MA0435.1 | 20 | TGAAGACGTAAATCCTTACA |
MA0436.1 | 7 | CCCCACG |
MA0437.1 | 9 | ATTTCTCCG |
MA0438.1 | 8 | ACGGAAAT |
MA0439.1 | 11 | CTTATCTCCGC |
MA0440.1 | 15 | ACCTTAAAGGTCATG |
MA0441.1 | 9 | TTCCCCGCA |
MA0442.1 | 6 | CTTTGT |
MA0443.1 | 10 | AGGGGGCGGA |
MA0444.1 | 7 | TTAATTG |
MA0446.1 | 11 | TGTTTGCTTAA |
MA0447.1 | 10 | ATTACGTAAT |
MA0448.1 | 7 | TTAATTA |
MA0449.1 | 10 | GGCACGTGCC |
MA0450.1 | 9 | GGGGCGTGA |
MA0451.1 | 12 | AAACTAGAGCAC |
MA0452.1 | 11 | CAAAAGGGTTA |
MA0453.1 | 12 | TATGCAAATTAG |
MA0454.1 | 11 | AACAGTAGCAG |
MA0455.1 | 7 | CTAATTA |
MA0456.1 | 12 | GACCCCCCGCTG |
MA0457.1 | 7 | TTAATTA |
MA0458.1 | 11 | TTGTTTACATT |
MA0459.1 | 10 | AAAAGTCAAA |
MA0460.1 | 9 | AAGGATAAT |
Random model letter frequencies
(from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|
MA0425.1 | chr1 | + | 173210982 | 173210995 | 4.41e-07 | 0.139 | ACCCCACTTCTGGA |
MA0425.1 | chr6 | + | 121187575 | 121187588 | 4.41e-07 | 0.139 | ACCCCACTTTGATG |
MA0425.1 | chr11 | − | 84637116 | 84637129 | 1.55e-06 | 0.214 | ACCCCACCTTCTGA |
MA0425.1 | chr17 | − | 12230095 | 12230108 | 1.55e-06 | 0.214 | ACCCCACTTCAGTA |
MA0425.1 | chr7 | + | 82906061 | 82906074 | 2.19e-06 | 0.214 | ACCCCACATTAGCC |
MA0425.1 | chr13 | + | 98513709 | 98513722 | 2.19e-06 | 0.214 | ACCCCACCTTGGTT |
MA0425.1 | chr18 | + | 74156786 | 74156799 | 2.65e-06 | 0.214 | ACCCCACCCTTTCG |
MA0425.1 | chr4 | + | 129141222 | 129141235 | 2.83e-06 | 0.214 | ACCCCACCTTTTTT |
MA0425.1 | chr10 | + | 76674012 | 76674025 | 3.68e-06 | 0.214 | ACCCCACCTTCTTC |
MA0425.1 | chr5 | − | 104189252 | 104189265 | 4.5e-06 | 0.214 | ACCCCACCTCCGCC |
MA0425.1 | chr11 | + | 58166882 | 58166895 | 4.86e-06 | 0.214 | ACCCCACCCTTGGT |
MA0425.1 | chr12 | − | 70465438 | 70465451 | 4.86e-06 | 0.214 | ACCCCACTATGGTG |
MA0425.1 | chr19 | − | 44460438 | 44460451 | 5.31e-06 | 0.214 | ACCCCACTCCCTCT |
MA0425.1 | chr4 | − | 135730928 | 135730941 | 5.75e-06 | 0.214 | ACCCCACACTTTGC |
MA0425.1 | chr7 | − | 148956901 | 148956914 | 5.75e-06 | 0.214 | ACCCCACATCTGTC |
MA0425.1 | chr2 | + | 77015848 | 77015861 | 6.12e-06 | 0.214 | ACCCCACCTCTTTC |
MA0425.1 | chr3 | + | 97461978 | 97461991 | 6.12e-06 | 0.214 | ACCCCACCCTCGGC |
MA0425.1 | chr13 | + | 73580931 | 73580944 | 6.12e-06 | 0.214 | ACCCCACATCCTCT |
MA0425.1 | chr4 | + | 118293186 | 118293199 | 6.91e-06 | 0.229 | ACCCCACCCCCGGG |
MA0425.1 | chr16 | + | 8687059 | 8687072 | 7.47e-06 | 0.235 | ACCCCACCCTCTGT |
MA0425.1 | chr6 | + | 38874210 | 38874223 | 8.01e-06 | 0.24 | ACCCCACCCCTGTG |
MA0425.1 | chr11 | − | 107309080 | 107309093 | 8.5e-06 | 0.243 | ACCCCACATCAGTT |
MA0425.1 | chr4 | + | 128533084 | 128533097 | 1.03e-05 | 0.249 | ACCCCACTCCTCTG |
MA0425.1 | chr9 | + | 24715290 | 24715303 | 1.03e-05 | 0.249 | ACCCCACTATCTGT |
MA0425.1 | chr14 | + | 70866370 | 70866383 | 1.03e-05 | 0.249 | ACCCCACCCCCGTG |
MA0425.1 | chr15 | − | 58719631 | 58719644 | 1.03e-05 | 0.249 | ACCCCACACCCGCA |
MA0425.1 | chr11 | + | 102226551 | 102226564 | 1.18e-05 | 0.255 | ACCCCACCCCCTTG |
MA0425.1 | chr17 | + | 25716466 | 25716479 | 1.18e-05 | 0.255 | ACCCCGCCTTCTCA |
MA0425.1 | chr17 | + | 26079581 | 26079594 | 1.18e-05 | 0.255 | ACCCCACCTAAGTG |
MA0425.1 | chr9 | − | 118353266 | 118353279 | 1.24e-05 | 0.257 | CCCCCACTTTGTTA |
MA0425.1 | chr4 | + | 134960977 | 134960990 | 1.32e-05 | 0.257 | GCCCCACCTTTTGC |
MA0425.1 | chr2 | − | 93306913 | 93306926 | 1.49e-05 | 0.257 | ACCCCACACCCTCC |
MA0425.1 | chr9 | − | 107206887 | 107206900 | 1.49e-05 | 0.257 | ACCCCACTCAGTTC |
MA0425.1 | chr17 | + | 29575370 | 29575383 | 1.49e-05 | 0.257 | ACCCCACCCCAACG |
MA0425.1 | chr19 | + | 55293527 | 55293540 | 1.49e-05 | 0.257 | ACCCCACCCCTACA |
MA0425.1 | chr8 | − | 87495024 | 87495037 | 1.58e-05 | 0.257 | ACCCCACCCAGTGG |
MA0425.1 | chr9 | + | 57618906 | 57618919 | 1.67e-05 | 0.257 | ACCCCACCCTTCCC |
MA0425.1 | chr11 | + | 61433813 | 61433826 | 1.67e-05 | 0.257 | ACCCCACCCTGCCT |
MA0425.1 | chr11 | − | 101309699 | 101309712 | 1.67e-05 | 0.257 | GCCCCACCCTTGGG |
MA0425.1 | chr17 | + | 28946101 | 28946114 | 1.67e-05 | 0.257 | ACCCCACCATGGCC |
MA0425.1 | chr1 | + | 169323157 | 169323170 | 1.75e-05 | 0.257 | GCCCCACCCTGTGG |
MA0425.1 | chr7 | + | 25940676 | 25940689 | 1.75e-05 | 0.257 | GCCCCACCCTGTGG |
MA0425.1 | chr2 | + | 28463350 | 28463363 | 1.86e-05 | 0.257 | ACCCCACTTATCTC |
MA0425.1 | chr7 | − | 35754261 | 35754274 | 2.08e-05 | 0.257 | CCCCCACCTTGGTG |
MA0425.1 | chr12 | + | 80012834 | 80012847 | 2.08e-05 | 0.257 | GCCCCACCCTCGGG |
MA0425.1 | chr12 | + | 102194504 | 102194517 | 2.08e-05 | 0.257 | ACCCCACCCAGTCA |
MA0425.1 | chr17 | − | 26651636 | 26651649 | 2.08e-05 | 0.257 | ACCCCACCCATGTG |
MA0425.1 | chr2 | − | 164599737 | 164599750 | 2.19e-05 | 0.257 | ACCCCACTGCTTCA |
MA0425.1 | chr4 | + | 129141212 | 129141225 | 2.19e-05 | 0.257 | ACCCCACCCTACCC |
MA0425.1 | chr11 | − | 74652199 | 74652212 | 2.19e-05 | 0.257 | ACCCCGCCCTTTCA |
MA0425.1 | chr13 | − | 104819666 | 104819679 | 2.19e-05 | 0.257 | CCCCCACTTCTTCC |
MA0425.1 | chr5 | + | 138127229 | 138127242 | 2.29e-05 | 0.257 | ACCCCACCCCCACC |
MA0425.1 | chr11 | − | 90524347 | 90524360 | 2.29e-05 | 0.257 | ACCCCACCCCCAGC |
MA0425.1 | chr14 | − | 119195501 | 119195514 | 2.29e-05 | 0.257 | ACCCCACCCCCACC |
MA0425.1 | chr6 | − | 38874115 | 38874128 | 2.41e-05 | 0.257 | ACCCCACTCAGATC |
MA0425.1 | chr7 | + | 28320579 | 28320592 | 2.41e-05 | 0.257 | ACCCCACATTCAAC |
MA0425.1 | chr8 | − | 125244375 | 125244388 | 2.41e-05 | 0.257 | ACCCCGCCTCCGCC |
MA0425.1 | chr16 | − | 34031860 | 34031873 | 2.41e-05 | 0.257 | ACCCCACACAGGCC |
MA0425.1 | chr17 | + | 25716539 | 25716552 | 2.41e-05 | 0.257 | ACCCCACCCCAACC |
MA0425.1 | chr15 | + | 98886948 | 98886961 | 2.55e-05 | 0.263 | ACCCCACCCTTTAC |
MA0425.1 | chr19 | − | 5846363 | 5846376 | 2.55e-05 | 0.263 | ACCCCACCCCAAGT |
MA0425.1 | chr6 | + | 57653649 | 57653662 | 2.69e-05 | 0.269 | ACCCCACTGTCTTT |
MA0425.1 | chr7 | + | 20250801 | 20250814 | 2.69e-05 | 0.269 | ACCCCTCTCTGGCT |
MA0425.1 | chr5 | − | 33375040 | 33375053 | 3.11e-05 | 0.282 | ACCCCACTCGGGTC |
MA0425.1 | chr13 | − | 81067760 | 81067773 | 3.11e-05 | 0.282 | ACCCCACCCCACCA |
MA0425.1 | chr19 | − | 24348735 | 24348748 | 3.11e-05 | 0.282 | GCCCCACCTCCTGT |
MA0425.1 | chr5 | − | 77087502 | 77087515 | 3.27e-05 | 0.282 | ACCCCACCCACTGC |
MA0425.1 | chr6 | − | 136416886 | 136416899 | 3.27e-05 | 0.282 | ACCCCACCCCCATT |
MA0425.1 | chr7 | − | 38964067 | 38964080 | 3.27e-05 | 0.282 | ACCCCACTCATGAA |
MA0425.1 | chr7 | − | 128112895 | 128112908 | 3.27e-05 | 0.282 | ACCCCACCCAGACA |
MA0425.1 | chr9 | − | 121335700 | 121335713 | 3.27e-05 | 0.282 | ACCCCACCTCCAAA |
MA0425.1 | chr15 | − | 79758342 | 79758355 | 3.27e-05 | 0.282 | ACCCCACCCCAATC |
MA0425.1 | chr17 | − | 47735252 | 47735265 | 3.27e-05 | 0.282 | ACCCCACCCACTCC |
MA0425.1 | chr4 | + | 111174235 | 111174248 | 3.44e-05 | 0.288 | ACCCCACCCTATAT |
MA0425.1 | chr5 | + | 109105713 | 109105726 | 3.6e-05 | 0.288 | ACCCCACCTGGATG |
MA0425.1 | chr7 | + | 148976519 | 148976532 | 3.6e-05 | 0.288 | ACCCCACTCAATAG |
MA0425.1 | chr9 | − | 122282276 | 122282289 | 3.6e-05 | 0.288 | GCCCCACCCTGACA |
MA0425.1 | chr1 | + | 135693980 | 135693993 | 3.76e-05 | 0.288 | GCCCCACCCTATCC |
MA0425.1 | chr8 | − | 3522204 | 3522217 | 3.76e-05 | 0.288 | GCCCCACCTTTCTA |
MA0425.1 | chr15 | − | 83253283 | 83253296 | 3.76e-05 | 0.288 | CCCCCACTTTCCCC |
MA0425.1 | chr18 | − | 85054532 | 85054545 | 3.76e-05 | 0.288 | GCCCCACCCTCTGT |
MA0425.1 | chr5 | − | 64979478 | 64979491 | 3.92e-05 | 0.288 | ACCCCACCCCCCTA |
MA0425.1 | chr15 | + | 82060394 | 82060407 | 3.92e-05 | 0.288 | GCCCCACCCTGTTT |
MA0425.1 | chr18 | + | 74156827 | 74156840 | 3.92e-05 | 0.288 | ACCCCGCTCTTCTC |
MA0425.1 | chr4 | − | 155336073 | 155336086 | 4.11e-05 | 0.288 | ACCCCACCCTAAAA |
MA0425.1 | chr9 | + | 20561674 | 20561687 | 4.11e-05 | 0.288 | GCCCCACCTTTTAA |
MA0425.1 | chr12 | − | 70860508 | 70860521 | 4.11e-05 | 0.288 | ACCCCACACAGAGC |
MA0425.1 | chr13 | − | 104819601 | 104819614 | 4.11e-05 | 0.288 | GCCCCACTCCATTT |
MA0425.1 | chr1 | + | 9738455 | 9738468 | 4.3e-05 | 0.288 | ACCCCGCACTCACA |
MA0425.1 | chr1 | − | 135694129 | 135694142 | 4.3e-05 | 0.288 | GCCCCACCCTGAGC |
MA0425.1 | chr5 | − | 143682427 | 143682440 | 4.3e-05 | 0.288 | CCCCCACTTTTGAT |
MA0425.1 | chr7 | + | 6315945 | 6315958 | 4.49e-05 | 0.288 | GCCCCACCTTTCTC |
MA0425.1 | chr7 | + | 107641281 | 107641294 | 4.49e-05 | 0.288 | CCCCCACTCCTACG |
MA0425.1 | chr8 | + | 97257707 | 97257720 | 4.49e-05 | 0.288 | GCCCCTCTTTCTGG |
MA0425.1 | chr12 | − | 78031313 | 78031326 | 4.49e-05 | 0.288 | GCCCCGCTCTGGCT |
MA0425.1 | chr2 | + | 84682294 | 84682307 | 4.69e-05 | 0.288 | GCCCCACCCCTGCT |
MA0425.1 | chr4 | − | 46419950 | 46419963 | 4.69e-05 | 0.288 | ACCCCACCCTCCAG |
MA0425.1 | chr4 | + | 135734039 | 135734052 | 4.69e-05 | 0.288 | GCCCCACCCTGATA |
MA0425.1 | chr10 | − | 128184858 | 128184871 | 4.69e-05 | 0.288 | GCCCCACACTTCGG |
MA0425.1 | chr15 | + | 76884026 | 76884039 | 4.69e-05 | 0.288 | ACCCCGCTTGCTCA |
MA0425.1 | chr7 | + | 25940661 | 25940674 | 4.88e-05 | 0.288 | CCCCCACATCTGTA |
MA0425.1 | chr9 | − | 107206892 | 107206905 | 4.88e-05 | 0.288 | ACCCCACCCCACTC |
MA0425.1 | chr1 | − | 135694231 | 135694244 | 5.08e-05 | 0.288 | ACCCCTCATTAAGA |
MA0425.1 | chr7 | − | 111007745 | 111007758 | 5.08e-05 | 0.288 | ACCCCACCCAGCTG |
MA0425.1 | chr10 | + | 40924903 | 40924916 | 5.08e-05 | 0.288 | ACCCCGCCCCAGGC |
MA0425.1 | chr5 | − | 129513273 | 129513286 | 5.29e-05 | 0.288 | ACCCCACACAAACC |
MA0425.1 | chr8 | − | 97964452 | 97964465 | 5.29e-05 | 0.288 | GCCCCACTGTGGCC |
MA0425.1 | chr16 | − | 8764987 | 8765000 | 5.29e-05 | 0.288 | ACCCCACAGTCACA |
MA0425.1 | chr16 | − | 32509970 | 32509983 | 5.29e-05 | 0.288 | GCCCCACCCTCAGC |
MA0425.1 | chr17 | + | 24340139 | 24340152 | 5.29e-05 | 0.288 | GCCCCACCCTCAGC |
MA0425.1 | chr19 | − | 44460423 | 44460436 | 5.29e-05 | 0.288 | ACCCCACACAGATC |
MA0425.1 | chr8 | − | 122895802 | 122895815 | 5.51e-05 | 0.288 | GCCCCACCCCAGGC |
MA0425.1 | chr18 | − | 80416962 | 80416975 | 5.51e-05 | 0.288 | GCCCCACTGTGGCT |
MA0425.1 | chr8 | − | 83025165 | 83025178 | 5.74e-05 | 0.288 | ACCCCACTCCCCAT |
MA0425.1 | chr14 | − | 70866209 | 70866222 | 5.74e-05 | 0.288 | GCCCCACCCCAGCT |
MA0425.1 | chr5 | − | 140280105 | 140280118 | 5.96e-05 | 0.288 | CCCCCGCCTTGTGG |
MA0425.1 | chr7 | + | 16987355 | 16987368 | 5.96e-05 | 0.288 | CCCCCTCTTTGGGG |
MA0425.1 | chr7 | + | 149566253 | 149566266 | 5.96e-05 | 0.288 | ACCCCTCCTCCTCC |
MA0425.1 | chr1 | − | 9738678 | 9738691 | 6.18e-05 | 0.288 | CCCCCACCTTCCGA |
MA0425.1 | chr2 | + | 103962065 | 103962078 | 6.18e-05 | 0.288 | GCCCCACCCCATGT |
MA0425.1 | chr9 | − | 44773778 | 44773791 | 6.18e-05 | 0.288 | CCCCCACCCTCGCT |
MA0425.1 | chr9 | − | 90157110 | 90157123 | 6.18e-05 | 0.288 | GCCCCACCCTGCCC |
MA0425.1 | chr11 | − | 58166772 | 58166785 | 6.18e-05 | 0.288 | GCCCCACACCTAGA |
MA0425.1 | chr2 | − | 167256585 | 167256598 | 6.42e-05 | 0.288 | CCCCCACTCCCAGA |
MA0425.1 | chr3 | − | 95469257 | 95469270 | 6.42e-05 | 0.288 | ACCCCACAACAAGC |
MA0425.1 | chr4 | + | 9588340 | 9588353 | 6.42e-05 | 0.288 | ACCCCGCCCTTGAA |
MA0425.1 | chr4 | + | 111203436 | 111203449 | 6.42e-05 | 0.288 | ACCCCTCACTATGA |
MA0425.1 | chr7 | − | 139969758 | 139969771 | 6.42e-05 | 0.288 | GCCCCACTGCTTGG |
MA0425.1 | chr8 | + | 87362619 | 87362632 | 6.42e-05 | 0.288 | GCCCCACCCTGCCT |
MA0425.1 | chr8 | − | 109927493 | 109927506 | 6.42e-05 | 0.288 | GCCCCACCCTTCCC |
MA0425.1 | chr11 | + | 102236643 | 102236656 | 6.42e-05 | 0.288 | GCCCCACTTGATCT |
MA0425.1 | chr14 | − | 63796699 | 63796712 | 6.42e-05 | 0.288 | GCCCCGCCTCCTCG |
MA0425.1 | chr17 | − | 12397931 | 12397944 | 6.42e-05 | 0.288 | GCCCCACCCTGCCT |
MA0425.1 | chr19 | − | 5922410 | 5922423 | 6.42e-05 | 0.288 | GCCCCACCCTTCCC |
MA0425.1 | chr2 | − | 24832765 | 24832778 | 6.67e-05 | 0.288 | ACCCCACCAACTGA |
MA0425.1 | chr6 | + | 86027841 | 86027854 | 6.67e-05 | 0.288 | ACCCCTCCTCTTTT |
MA0425.1 | chr12 | + | 27136225 | 27136238 | 6.67e-05 | 0.288 | GCCCCACCCTGCTA |
MA0425.1 | chr14 | − | 69940227 | 69940240 | 6.67e-05 | 0.288 | ACCCCGCCCCCTTC |
MA0425.1 | chr18 | − | 32702081 | 32702094 | 6.67e-05 | 0.288 | ACCCCACAGCAGGT |
MA0425.1 | chr9 | + | 107198878 | 107198891 | 6.92e-05 | 0.288 | GCCCCACTCGGGCA |
MA0425.1 | chr11 | − | 60988917 | 60988930 | 6.92e-05 | 0.288 | GCCCCGCCTCTTTG |
MA0425.1 | chr11 | − | 60988933 | 60988946 | 6.92e-05 | 0.288 | GCCCCACCCCTCCG |
MA0425.1 | chr13 | − | 81067755 | 81067768 | 6.92e-05 | 0.288 | ACCCCACCACGCCC |
MA0425.1 | chr15 | − | 62052589 | 62052602 | 6.92e-05 | 0.288 | GCCCCACTGTCAGG |
MA0425.1 | chr19 | − | 56466323 | 56466336 | 6.92e-05 | 0.288 | GCCCCACCCCAGTC |
MA0425.1 | chr4 | − | 126645671 | 126645684 | 7.17e-05 | 0.288 | ACCCCTCACTGACA |
MA0425.1 | chr8 | + | 73222621 | 73222634 | 7.17e-05 | 0.288 | GCCCCACCCCCATG |
MA0425.1 | chr8 | + | 122302906 | 122302919 | 7.17e-05 | 0.288 | ACCCCACCGTCCGA |
MA0425.1 | chr9 | − | 59598636 | 59598649 | 7.17e-05 | 0.288 | GCCCCGCCTCCGCA |
MA0425.1 | chr9 | + | 90156995 | 90157008 | 7.17e-05 | 0.288 | ACCCCTCTATTTCC |
MA0425.1 | chr11 | + | 102226637 | 102226650 | 7.17e-05 | 0.288 | ACCCCACCCACCCT |
MA0425.1 | chr15 | − | 103088843 | 103088856 | 7.17e-05 | 0.288 | ACCCCGCCCTGCTC |
MA0425.1 | chr17 | + | 45710264 | 45710277 | 7.17e-05 | 0.288 | GCCCCGCCCTTGGA |
MA0425.1 | chr3 | + | 89612495 | 89612508 | 7.41e-05 | 0.288 | ACCCCACCACACCA |
MA0425.1 | chr9 | + | 108243310 | 108243323 | 7.41e-05 | 0.288 | GCCCCACCCTTTAA |
MA0425.1 | chr13 | + | 76003320 | 76003333 | 7.41e-05 | 0.288 | ACCCCACCACCCTG |
MA0425.1 | chr5 | + | 45951962 | 45951975 | 7.67e-05 | 0.288 | ACCCCTCACTCTTA |
MA0425.1 | chr13 | + | 113639602 | 113639615 | 7.67e-05 | 0.288 | ACCCCTCCTACTGG |
MA0425.1 | chr13 | + | 35887927 | 35887940 | 7.67e-05 | 0.288 | GCCCCACCCTCCCT |
MA0425.1 | chr13 | + | 81067813 | 81067826 | 7.67e-05 | 0.288 | ACCCCACTAATGAA |
MA0425.1 | chr17 | + | 28946077 | 28946090 | 7.67e-05 | 0.288 | ACCCCACCCGCACA |
MA0425.1 | chr4 | + | 153401021 | 153401034 | 7.95e-05 | 0.288 | CCCCCACCCCAGGA |
MA0425.1 | chr5 | + | 118933784 | 118933797 | 7.95e-05 | 0.288 | GCCCCACCCCCACC |
MA0425.1 | chr5 | − | 129513353 | 129513366 | 7.95e-05 | 0.288 | GCCCCACCCTGGAT |
MA0425.1 | chr5 | + | 130456279 | 130456292 | 7.95e-05 | 0.288 | GCCCCACCCCCACC |
MA0425.1 | chr5 | + | 130456285 | 130456298 | 7.95e-05 | 0.288 | CCCCCACCCCAGCA |
MA0425.1 | chr6 | + | 35303909 | 35303922 | 7.95e-05 | 0.288 | GCCCCACCCCCACC |
MA0425.1 | chr7 | − | 148354616 | 148354629 | 7.95e-05 | 0.288 | GCCCCGCCCTGGGC |
MA0425.1 | chr11 | + | 90548055 | 90548068 | 7.95e-05 | 0.288 | ACCCCACCAAGTTC |
MA0425.1 | chr15 | − | 98860391 | 98860404 | 7.95e-05 | 0.288 | GCCCCACCCAGGCC |
MA0425.1 | chr1 | + | 9738450 | 9738463 | 8.24e-05 | 0.288 | ACCCCACCCCGCAC |
MA0425.1 | chr5 | − | 97380805 | 97380818 | 8.24e-05 | 0.288 | GCCCCTCTTCTAGG |
MA0425.1 | chr6 | + | 120124637 | 120124650 | 8.24e-05 | 0.288 | ACCCCTCTCAGGCT |
MA0425.1 | chr8 | + | 74937925 | 74937938 | 8.24e-05 | 0.288 | GCCCCACCCAGGGT |
MA0425.1 | chr9 | − | 66352158 | 66352171 | 8.24e-05 | 0.288 | ACCCCGCCATGTTT |
MA0425.1 | chr12 | − | 85792303 | 85792316 | 8.24e-05 | 0.288 | GCCCCACCCACGGA |
MA0425.1 | chr15 | − | 34829932 | 34829945 | 8.24e-05 | 0.288 | GCCCCACCCCAACC |
MA0425.1 | chr15 | − | 95715854 | 95715867 | 8.24e-05 | 0.288 | GCCCCGCCCTGGGT |
MA0425.1 | chr16 | + | 32509253 | 32509266 | 8.24e-05 | 0.288 | ACCCCGCCCAGTCT |
MA0425.1 | chr19 | − | 56466361 | 56466374 | 8.24e-05 | 0.288 | GCCCCACCCCAACC |
MA0425.1 | chr4 | − | 154285968 | 154285981 | 8.54e-05 | 0.289 | GCCCCACCCCAACT |
MA0425.1 | chr8 | + | 73367414 | 73367427 | 8.54e-05 | 0.289 | ACCCCACAAACTTA |
MA0425.1 | chr9 | + | 44096705 | 44096718 | 8.54e-05 | 0.289 | ACCCCTCATTGCTT |
MA0425.1 | chr9 | − | 59598218 | 59598231 | 8.54e-05 | 0.289 | CCCCCACTTGTTCC |
MA0425.1 | chr14 | − | 69940048 | 69940061 | 8.54e-05 | 0.289 | GCCCCACCATAGTA |
MA0425.1 | chr6 | + | 83115650 | 83115663 | 8.82e-05 | 0.289 | ACCCCGCCCCGCCT |
MA0425.1 | chr7 | − | 16987659 | 16987672 | 8.82e-05 | 0.289 | CCCCCACCCCCGCC |
MA0425.1 | chr7 | + | 71081518 | 71081531 | 8.82e-05 | 0.289 | ACCCCACCCACCTT |
MA0425.1 | chr12 | + | 71933863 | 71933876 | 8.82e-05 | 0.289 | ACCCCTCCCCCTCA |
MA0425.1 | chr15 | + | 62052896 | 62052909 | 8.82e-05 | 0.289 | GCCCCACCTGGTCC |
MA0425.1 | chr2 | − | 103797892 | 103797905 | 9.11e-05 | 0.289 | CCCCCACTCCTCCT |
MA0425.1 | chr2 | − | 157978612 | 157978625 | 9.11e-05 | 0.289 | ACCCCTCCCCTTCT |
MA0425.1 | chr4 | + | 118862598 | 118862611 | 9.11e-05 | 0.289 | ACCCCACAGAGGGC |
MA0425.1 | chr4 | + | 128533120 | 128533133 | 9.11e-05 | 0.289 | GCCCCACACATTCC |
MA0425.1 | chr5 | + | 121049801 | 121049814 | 9.11e-05 | 0.289 | CCCCCACCCCCGCT |
MA0425.1 | chr8 | − | 24255141 | 24255154 | 9.11e-05 | 0.289 | CCCCCACTCCCCTG |
MA0425.1 | chr12 | − | 114390724 | 114390737 | 9.11e-05 | 0.289 | ACCCCGCCCAAGGC |
MA0425.1 | chr19 | − | 5846033 | 5846046 | 9.11e-05 | 0.289 | CCCCCACCCTGCTG |
MA0425.1 | chr2 | + | 31940993 | 31941006 | 9.41e-05 | 0.291 | GCCCCACCACGGCC |
MA0425.1 | chr4 | − | 153400891 | 153400904 | 9.41e-05 | 0.291 | CCCCCACTACAGCA |
MA0425.1 | chr8 | − | 125244380 | 125244393 | 9.41e-05 | 0.291 | GCCCCACCCCGCCT |
MA0425.1 | chr17 | − | 47735327 | 47735340 | 9.41e-05 | 0.291 | CCCCCACCCCTGTC |
MA0425.1 | chr1 | + | 75176011 | 75176024 | 9.73e-05 | 0.291 | ACCCCACCAGCTGG |
MA0425.1 | chr2 | − | 32629436 | 32629449 | 9.73e-05 | 0.291 | CCCCCACCCCCTGT |
MA0425.1 | chr9 | + | 98390201 | 98390214 | 9.73e-05 | 0.291 | GCCCCACCCCACCA |
MA0425.1 | chr12 | + | 58298910 | 58298923 | 9.73e-05 | 0.291 | ACCCCGCTGCTGTT |
MA0425.1 | chr13 | + | 113538174 | 113538187 | 9.73e-05 | 0.291 | GCCCCACCCAGGTC |
MA0425.1 | chr14 | − | 119195316 | 119195329 | 9.73e-05 | 0.291 | CCCCCACCCCATGC |
MA0425.1 | chr15 | − | 85935983 | 85935996 | 9.73e-05 | 0.291 | GCCCCACCCTCAAG |
MA0425.1 | chr16 | − | 10384420 | 10384433 | 9.73e-05 | 0.291 | GCCCCACCCCTCCT |
Command line:
/Users/cegrant/meme_4.10.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_6 --bgfile memechip_example_output_files/background --motif MA0425.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa
Settings:
output directory = memechip_example_output_files/fimo_out_6 | MEME file name = JASPAR_CORE_2009.meme | sequence file name = memechip_example_output_files/sample-dna-Klf1.fa |
background file name = memechip_example_output_files/background | allow clobber = true | compute q-values = true |
parse genomic coord. = true | text only = false | scan both strands = true |
max sequence length = 250000000 | output threshold = 0.0001 | threshold type = p-value |
max stored scores = 100000 | pseudocount = 0.1 | verbosity = 1 |
selected motif = MA0425.1 |
This information can be useful in the event you wish to report a problem with the FIMO software.