transfac2meme

Usage:

transfac2meme [options] <matrix file>

Description

Convert a TRANSFAC 'matrix.dat' file into a MEME motif file suitable for use with MEME Suite programs.

Input

TRANSFAC matrix File

A file in TRANSFAC matrix format. Note that Dollar signs in TRANSFAC IDs are converted to underscores.

Output

Options

Option Parameter Description Default Behaviour
General Options
-use_acc Use the accession name instead of the TRANSFAC ID as the motif identifier.
-idsID file Keep only the motifs identified in the ID file. Keep all motifs.
-speciesspecies name Keep only motifs with this species name. Keep all motifs.