Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.10.0, (Release date: Tue May 06 16:46:04 2014 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE memechip_example_output_files/sample-dna-Klf1.fa
Database contains 904 sequences, 452000 residues

MOTIFS JASPAR_CORE_2009.meme (nucleotide)

MOTIF WIDTH BEST POSSIBLE MATCH
MA0001.1 10 CCATAAATAG
MA0002.1 11 TATTGTGGTTA
MA0002.2 11 GTCTGTGGTTT
MA0003.1 9 GCCCGGGGG
MA0004.1 6 CACGTG
MA0005.1 11 CCAAATTTGGT
MA0006.1 6 TGCGTG
MA0007.1 22 ATAAGAACATCGTGTACCCGCC
MA0008.1 8 CAATTATT
MA0009.1 11 CTAGGTGTGAA
MA0010.1 14 GTAATAAACAAATC
MA0011.1 8 TACTATTT
MA0012.1 11 TAAACTAAAAG
MA0013.1 11 TAGTAAACAAA
MA0014.1 20 AGAGCACTGAAGCGTAACGG
MA0015.1 10 GTATATATAC
MA0016.1 10 GGGGTCACGG
MA0017.1 14 TGACCTTTGAACCT
MA0018.1 12 CCTGGTGACGTC
MA0018.2 8 TGACGTCA
MA0019.1 12 AGATGCAATCCC
MA0020.1 6 AAAGCA
MA0021.1 6 AAAGCG
MA0022.1 12 GGGGTTTTTCCG
MA0023.1 10 GGGGTTTTCC
MA0024.1 8 TTTGGCGC
MA0025.1 11 TTATGTAACAT
MA0026.1 7 CCGGAAG
MA0027.1 11 AAGTAGTGTTC
MA0028.1 10 GAGCCGGAAG
MA0029.1 14 AAGATAAGATAATA
MA0030.1 14 CAAACGTAAACAAT
MA0031.1 8 GTAAACAT
MA0032.1 8 GGTAAGTA
MA0033.1 8 TATACATA
MA0034.1 10 GACAACCGCC
MA0035.1 6 GGATGG
MA0035.2 11 ACAGATAAGAA
MA0036.1 5 GGATA
MA0037.1 6 AGATAG
MA0038.1 10 CAAATCACTG
MA0039.1 10 TAAAGGAAGG
MA0039.2 10 TGGGTGGGGC
MA0040.1 11 TATTGTTTATT
MA0041.1 12 GAATGTTTGTTT
MA0042.1 12 GGATGTTTGTTT
MA0043.1 12 GGTTACGTAATT
MA0044.1 9 GTTGTATTC
MA00445.1 11 TCCATTGTTCT
MA0045.1 16 CAACAAATGGAAAAAC
MA0046.1 14 GGTTAATAATTAAC
MA0047.1 12 CAATATTTACTT
MA0047.2 12 TGTTTACTTAGG
MA0048.1 12 GCGCAGCTGCGT
MA0049.1 10 GCATAAAAAA
MA0050.1 12 GAAAGTGAAACC
MA0051.1 18 GGAAAGTGAAAGCAAAAC
MA0052.1 10 CTATTTATAG
MA0053.1 5 AAAGC
MA0054.1 9 TAACCGTTT
MA0055.1 12 CAGCAGCTGCTG
MA0056.1 6 TGGGGA
MA0057.1 10 GTAGGGGGAA
MA0058.1 10 AACCACGTGA
MA0059.1 11 GAGCACGTGGT
MA0060.1 16 CTCAGCCAATCAGCGC
MA0061.1 10 GGGAATTTCC
MA0062.1 10 ACCGGAAGAG
MA0062.2 11 CCGGAAGTGGC
MA0063.1 7 TTAATTG
MA0064.1 5 AAAGC
MA0065.1 20 TTAGGGGTCAAAGGTCATCT
MA0065.2 15 GTAGGGCAAAGGTCA
MA0066.1 20 GTAGGTCACGGTGACCTACT
MA0067.1 8 AGTCACGG
MA0068.1 30 GAAAAATTTCCAATACTCCACTCCCCCCCC
MA0069.1 14 TTCACGCATGAGTT
MA0070.1 12 CCATCAATCAAA
MA0071.1 10 ATCAAGGTCA
MA0072.1 14 TATAAGTAGGTCAA
MA0073.1 20 CCCCAAACCACCCCCCCCCA
MA0074.1 15 GGGTCATCGAGTTCA
MA0075.1 5 AATTA
MA0076.1 9 ACCGGAAGT
MA0077.1 9 GAACAATGG
MA0078.1 9 TTCATTGTC
MA0079.1 10 GGGGCGGGGT
MA0079.2 10 CCCCGCCCCC
MA0080.1 6 CGGAAG
MA0080.2 7 AGGAAGT
MA0081.1 7 AGAGGAA
MA0082.1 14 CCAAAAATGGAAAT
MA0083.1 12 GCCCATATATGG
MA0084.1 9 GTAAACAAT
MA0085.1 16 TTGTGGGAAACGAGAT
MA0086.1 6 CAGGTG
MA0087.1 7 TAACAAT
MA0088.1 20 GATTTCCCATAATGCCTTGC
MA0089.1 6 CATGAC
MA0090.1 12 CACATTCCTCCG
MA0091.1 12 CGACCATCTGTT
MA0092.1 10 GGTCTGGCAT
MA0093.1 7 CACGTGG
MA0094.1 4 TAAT
MA0094.2 8 TTTAATTA
MA0095.1 6 GCCATC
MA0096.1 7 ATGACGT
MA0097.1 12 GATGACGTGGCC
MA0098.1 6 TTTCCG
MA0099.1 8 GTGAGTCA
MA0099.2 7 TGACTCA
MA0100.1 8 GGCCGTTG
MA0101.1 10 GGGGATTTCC
MA0102.1 12 TTTCGCAATCTT
MA0102.2 9 TTTCGCAAT
MA0103.1 6 CACCTG
MA0104.1 6 CACGTG
MA0104.2 10 CGCACGTGGC
MA0105.1 11 GGGGATTCCCC
MA0106.1 20 CCGGACATGCCCGGGCATGT
MA0107.1 10 GGGAATTTCC
MA0108.1 15 GTATAAAAGGCGGGG
MA0108.2 15 GTATAAAAGGCGGGG
MA0109.1 10 AACCTTATAT
MA0110.1 9 CCAATTATT
MA0111.1 11 AGGGTAACAGC
MA0112.1 18 CCAGGTCACCGTGACCCC
MA0112.2 20 GGCCCAGGTCACCCTGACCT
MA0113.1 18 GGGAACATTATGTCCTAT
MA0114.1 13 AGGCCAAAGGTCA
MA0115.1 17 AAAGGTCAAAGGTCAAC
MA0116.1 15 GGCACCCAGGGGTGC
MA0117.1 8 GCTGACGG
MA0118.1 9 TGGGGGTTC
MA0119.1 14 TGGCACCATGCCAA
MA0120.1 12 TTTTCCTTTTCG
MA0121.1 8 AGATCCGC
MA0122.1 9 TTAAGTGGA
MA0123.1 10 CGGTGCCCCC
MA0124.1 7 ATACTTA
MA0125.1 8 TAATTGGT
MA0126.1 9 AGTAACAGT
MA0127.1 10 ACTTCTTATT
MA0128.1 8 ACACGTGG
MA0129.1 7 TACGTCA
MA0130.1 6 ATCCAC
MA0131.1 10 TAACGTCCGC
MA0132.1 6 CTAATT
MA0133.1 7 ACAACAC
MA0135.1 13 AAATTAATTAATC
MA0136.1 9 TACTTCCTT
MA0137.1 14 GGAAAATGAAACTG
MA0137.2 15 CATTTCCCGGAAACC
MA0138.1 19 GCGCTGTCCATGGTGCTGA
MA0138.2 21 TTCAGCACCATGGACAGCGCC
MA0139.1 19 TGGCCACCAGGGGGCGCTA
MA0140.1 18 CTGGTGGGGACAGATAAG
MA0141.1 12 AGCTCAAGGTCA
MA0142.1 15 CTTTGTTATGCAAAT
MA0143.1 15 CCTTTGTTATGCAAA
MA0144.1 10 TTCCAGGAAG
MA0145.1 14 CCAGTTCAAACCAG
MA0146.1 14 GGGGCCGAGGCCTG
MA0147.1 10 CGCACGTGGC
MA0148.1 11 TGTTTACTTTG
MA0149.1 18 GGAAGGAAGGAAGGAAGG
MA0150.1 11 ATGACTCAGCA
MA0151.1 6 ATTAAA
MA0152.1 7 TTTTCCA
MA0153.1 12 TTAATATTTAAC
MA0154.1 10 ACCCAAGGGA
MA0155.1 12 TGTCAGGGGGCG
MA0156.1 8 CAGGAAAT
MA0157.1 8 TGTAAACA
MA0158.1 8 CACTAATT
MA0159.1 17 AGGTCATGGAGAGGTCA
MA0160.1 8 AAGGTCAC
MA0161.1 6 TTGGCA
MA0162.1 11 TGCGTGGGCGT
MA0163.1 14 GGGGCCCAAGGGGG
MA0164.1 7 CAAGCTT
MA0165.1 7 TTTATGA
MA0166.1 7 TTAATGA
MA0167.1 7 TTAATTA
MA0168.1 7 TTAATTG
MA0169.1 7 TTAATTG
MA0170.1 7 TTAATTA
MA0171.1 7 TTAATTG
MA0172.1 7 TTAATTA
MA0173.1 7 TTAACAT
MA0174.1 7 TTTATTA
MA0175.1 7 TTAATTG
MA0176.1 7 TTAATTA
MA0177.1 7 TTAATTA
MA0178.1 7 TTAATTA
MA0179.1 7 TTAATTA
MA0180.1 9 TTTAATTAG
MA0181.1 7 TTAATTA
MA0182.1 7 TTTATTA
MA0183.1 8 TTTAATTA
MA0184.1 7 CTAATTA
MA0185.1 6 TTCGTG
MA0186.1 7 TTAATGA
MA0187.1 7 TAATTAC
MA0188.1 7 CCAATTA
MA0189.1 7 TTAATTA
MA0190.1 6 TAATCC
MA0191.1 7 TTAATTA
MA0192.1 7 TTAATTG
MA0193.1 7 CTACCAA
MA0194.1 7 TTAATTA
MA0195.1 7 TTAATTA
MA0196.1 7 TTAATTG
MA0197.1 8 TTTAATTA
MA0198.1 7 CTAATTA
MA0199.1 5 TGATA
MA0200.1 7 CTAATTA
MA0201.1 7 TTAATCC
MA0202.1 7 CTAATTA
MA0203.1 7 TTAATGA
MA0204.1 6 TGATAC
MA0205.1 10 TTGCTCTCTC
MA0206.1 7 TTAATTA
MA0207.1 6 TGACAG
MA0208.1 7 TAATTAA
MA0209.1 7 CTAATTA
MA0210.1 5 TAACA
MA0211.1 7 TTAAGTG
MA0212.1 6 TAATCC
MA0213.1 8 CTGGCGCC
MA0214.1 7 TTAATTG
MA0215.1 7 TTAATGA
MA0216.1 7 TTTATTG
MA0217.1 5 TAACA
MA0218.1 6 TTGAAC
MA0219.1 7 TTAATGA
MA0220.1 7 TTAATTA
MA0221.1 7 CTAATGA
MA0222.1 8 TTTTGACA
MA0223.1 7 GTAATTA
MA0224.1 7 GTAATTA
MA0225.1 7 TTAATTA
MA0226.1 7 TTAATTA
MA0227.1 6 TGACAG
MA0228.1 7 CTAATTA
MA0229.1 8 TCTAATTA
MA0230.1 7 TTAATTA
MA0231.1 6 TAACTA
MA0232.1 6 TAATTA
MA0233.1 5 AAACA
MA0234.1 6 TAATCC
MA0235.1 7 TTGATTT
MA0236.1 7 TTAATTA
MA0237.1 8 CTTTGATC
MA0238.1 7 TTAATTA
MA0239.1 9 AGTAACAGT
MA0240.1 7 TTAATTA
MA0241.1 7 CTAATTA
MA0242.1 9 TAACCGCAA
MA0243.1 12 GACATTCCTCGA
MA0244.1 8 ATTGCAAA
MA0245.1 7 TTAATTA
MA0246.1 6 TGATAC
MA0247.1 8 CTCAAGTG
MA0248.1 7 TTAATTG
MA0249.1 12 TCGCATATGTTG
MA0250.1 7 TTAATTG
MA0251.1 7 TTAATTA
MA0252.1 6 TGACAG
MA0253.1 9 TTTCAAGTG
MA0254.1 6 TATGCA
MA0255.1 10 TTGAGTGATT
MA0256.1 7 CTAATGA
MA0257.1 7 TTAATTA
MA0258.1 18 CAAGGTCACGGTGACCTG
MA0259.1 8 GGACGTGC
MA0260.1 6 GAAACC
MA0261.1 6 GAACAC
MA0262.1 13 AATGTTGCGAATT
MA0263.1 14 ATTGGCTTCGTTAA
MA0264.1 11 ACCACTTGAAA
MA0265.1 16 TCGTATAAAGTGATAT
MA0266.1 7 CTCTAGA
MA0267.1 7 ACCAGCA
MA0268.1 7 ACCCCAC
MA0269.1 21 TTACATATTGCACCCGATTGG
MA0270.1 8 CACACCCC
MA0271.1 6 AGACGC
MA0272.1 8 GTGACTCT
MA0273.1 21 GATAATTCTCGGCAAGTATGT
MA0274.1 8 ACTTGAAT
MA0275.1 6 CCGGAA
MA0276.1 10 CCGGATCGGG
MA0277.1 9 AAAAAGAAA
MA0278.1 21 GCACAGCCAGAGTCAAGTCAA
MA0279.1 10 ATTAGTAAGC
MA0280.1 6 CCGGAA
MA0281.1 8 GCACGTGA
MA0282.1 8 CTCGGAAA
MA0283.1 8 GGCGGAGA
MA0284.1 10 TTACGTAATC
MA0285.1 9 CTAAGCCAC
MA0286.1 9 ATGACGTAA
MA0287.1 11 CAGCAAAAATG
MA0288.1 9 TGACACATT
MA0289.1 7 CGATAAG
MA0290.1 19 AAAAGCCGCGGGCGGGATT
MA0291.1 9 AATGTGCGC
MA0292.1 7 CTCCGGA
MA0293.1 11 AAAGATCTAAA
MA0294.1 9 CGGAAAAAT
MA0295.1 8 GACGCAAA
MA0296.1 20 TGAATTGTAAACAAAGAGGA
MA0297.1 7 GTAAACA
MA0298.1 6 CTATCA
MA0299.1 15 CGGGGAACAGTACTC
MA0300.1 8 CCGATAAG
MA0301.1 9 AGATCTACA
MA0302.1 11 AAAGATCTAAA
MA0303.1 21 CAAGGGATGAGTCATACTTCA
MA0304.1 8 TGGAAGCC
MA0305.1 7 GCTTCCT
MA0306.1 9 ACCCCTAAA
MA0307.1 5 GATAA
MA0308.1 21 ATTAAAAAACTCCGGAGTATA
MA0309.1 8 TGATAAGA
MA0310.1 8 GACACGTG
MA0311.1 5 CGGAA
MA0312.1 8 CGGAGATA
MA0313.1 5 TTGGT
MA0314.1 15 TCTGATTGGTTCAGA
MA0315.1 15 ACCAATCAGAGGCGA
MA0316.1 15 TGGGATCTGATTGGT
MA0317.1 8 ATAAACAA
MA0318.1 8 CATGTAAT
MA0319.1 8 ATGGAACA
MA0320.1 8 CCGCCGAG
MA0321.1 9 GCATGTGAA
MA0322.1 9 GCATGTGAA
MA0323.1 15 AAGCCGGAAGCGGGG
MA0324.1 10 CCGTTACCGG
MA0325.1 8 CCGGAATT
MA0326.1 8 TTTGCTCA
MA0327.1 7 ACACAAT
MA0328.1 9 CATGTAATT
MA0329.1 7 ACGCGTA
MA0330.1 7 ACGCGTT
MA0331.1 12 CCCAATTAGGAA
MA0332.1 6 CTGTGG
MA0333.1 9 AGTGTGGCG
MA0334.1 7 CGCCACA
MA0335.1 8 AACTGTGG
MA0336.1 21 AGGACTATAGAACACTCTAAA
MA0337.1 7 CCCCCGC
MA0338.1 7 CCCCGCA
MA0339.1 7 CCCCGCA
MA0340.1 6 TAGGTA
MA0341.1 5 AGGGG
MA0342.1 5 AGGGG
MA0343.1 21 TTTCCGGCCACAAAAACGCAA
MA0344.1 8 GCCGGGGA
MA0345.1 21 ATGACCTATATATAAAAATGA
MA0346.1 20 TTTATTTATATATAATATGA
MA0347.1 20 CTAGATCAGGGTCCATCGCA
MA0348.1 9 TCGGAGATA
MA0349.1 7 CGAACCG
MA0350.1 21 AGGCACAGCTCATCGCGTTTT
MA0351.1 21 TTCTGCACCTCATCGCATCCT
MA0352.1 8 TCCGCGGA
MA0353.1 8 TCCGCGGA
MA0354.1 8 ACGGAGAT
MA0355.1 10 ACCTGCAGCA
MA0356.1 6 ATAATA
MA0357.1 8 GCACGTGC
MA0358.1 8 CCCGGGAA
MA0359.1 10 CACCCATACA
MA0360.1 8 TGCGGAAC
MA0361.1 7 CGGCCGA
MA0362.1 7 CTCGGGG
MA0363.1 9 GTTACCCGG
MA0364.1 7 CCCCTGA
MA0365.1 8 GGTTGCTA
MA0366.1 5 AGGGG
MA0367.1 11 AATTTTTCCGG
MA0368.1 7 CGCCAAG
MA0369.1 18 AGTTCTATAAATAGATTC
MA0370.1 10 TCCAAAGGAA
MA0371.1 12 TCCATTGTTCTC
MA0372.1 8 ACCCCTAA
MA0373.1 7 GGTGGCG
MA0374.1 7 CGCGCGG
MA0375.1 8 CGCGCGCG
MA0376.1 20 ATATTAGCACGTGCTTAGTC
MA0377.1 21 TAGAGAATAGAAGAAATAAAA
MA0378.1 21 ATTGAAAAAAATTTTCTACGG
MA0379.1 5 ATATA
MA0380.1 7 CTCCGGA
MA0381.1 6 GGCCAT
MA0382.1 8 ACGTAATG
MA0383.1 21 TTACCTATAATTAAATTAGCA
MA0384.1 11 TGGTAGCGCCG
MA0385.1 11 ACCTGCAGGCA
MA0386.1 21 GACTAGATATATATATTCGAT
MA0387.1 10 AATTAAAGAA
MA0388.1 8 GAAATCAA
MA0389.1 8 AGATCTAC
MA0390.1 21 GTCCAAAATTTTTCACTCTGG
MA0391.1 7 CTCGGAA
MA0392.1 8 CGGTGTTA
MA0393.1 7 TGAAACA
MA0394.1 8 TGCGGCGC
MA0395.1 20 TGATCGGCGCCGCACGACGA
MA0396.1 9 GCTAGCGCA
MA0397.1 9 GATAGCGCA
MA0398.1 9 AAAATTTTT
MA0399.1 7 CGCGGGG
MA0400.1 20 ATGATAAACTCCGAAAATTT
MA0401.1 8 ACGCGAAA
MA0402.1 8 TGCTGGTT
MA0403.1 8 AACCCTAA
MA0404.1 8 CGGATCCG
MA0405.1 8 GCGGACAT
MA0406.1 8 ACATTCCC
MA0407.1 15 GGAAACTCTAAGAAC
MA0408.1 8 CTGTCAAA
MA0409.1 7 CACGTGA
MA0410.1 8 CGGCGGGA
MA0411.1 7 TATACGA
MA0412.1 13 TCGGCGGCTAATT
MA0413.1 20 AAATTCCCCCTGAATTTGTG
MA0414.1 7 CTCGAGA
MA0415.1 20 ATTTGCTTACGTAAGCTCGT
MA0416.1 8 ATTACGTA
MA0417.1 6 AAGCAT
MA0418.1 20 GGTCTGATTACGTAAGCGAC
MA0419.1 11 ATTAGTAAGCA
MA0420.1 8 ACCGGAAC
MA0421.1 10 TTTACCCGGC
MA0422.1 10 CCGGAGATAA
MA0423.1 9 ACCCCTATT
MA0424.1 8 CTCCGGAA
MA0425.1 14 ACCCCACTTTTTTA
MA0426.1 6 TAATTG
MA0427.1 11 AGCTCCGGAGA
MA0428.1 9 AACGGAAAT
MA0429.1 7 CGGCCGA
MA0430.1 8 CCGGAGTT
MA0431.1 9 ACCCCGCAC
MA0432.1 8 TCGGAGAT
MA0433.1 8 TTAATTAA
MA0434.1 9 TGTAGATCA
MA0435.1 20 TGAAGACGTAAATCCTTACA
MA0436.1 7 CCCCACG
MA0437.1 9 ATTTCTCCG
MA0438.1 8 ACGGAAAT
MA0439.1 11 CTTATCTCCGC
MA0440.1 15 ACCTTAAAGGTCATG
MA0441.1 9 TTCCCCGCA
MA0442.1 6 CTTTGT
MA0443.1 10 AGGGGGCGGA
MA0444.1 7 TTAATTG
MA0446.1 11 TGTTTGCTTAA
MA0447.1 10 ATTACGTAAT
MA0448.1 7 TTAATTA
MA0449.1 10 GGCACGTGCC
MA0450.1 9 GGGGCGTGA
MA0451.1 12 AAACTAGAGCAC
MA0452.1 11 CAAAAGGGTTA
MA0453.1 12 TATGCAAATTAG
MA0454.1 11 AACAGTAGCAG
MA0455.1 7 CTAATTA
MA0456.1 12 GACCCCCCGCTG
MA0457.1 7 TTAATTA
MA0458.1 11 TTGTTTACATT
MA0459.1 10 AAAAGTCAAA
MA0460.1 9 AAGGATAAT

Random model letter frequencies (from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif Sequence Name Strand Start End p-value q-value Matched Sequence
MA0425.1 chr1 + 173210982 173210995 4.41e-07 0.139 ACCCCACTTCTGGA
MA0425.1 chr6 + 121187575 121187588 4.41e-07 0.139 ACCCCACTTTGATG
MA0425.1 chr11 84637116 84637129 1.55e-06 0.214 ACCCCACCTTCTGA
MA0425.1 chr17 12230095 12230108 1.55e-06 0.214 ACCCCACTTCAGTA
MA0425.1 chr7 + 82906061 82906074 2.19e-06 0.214 ACCCCACATTAGCC
MA0425.1 chr13 + 98513709 98513722 2.19e-06 0.214 ACCCCACCTTGGTT
MA0425.1 chr18 + 74156786 74156799 2.65e-06 0.214 ACCCCACCCTTTCG
MA0425.1 chr4 + 129141222 129141235 2.83e-06 0.214 ACCCCACCTTTTTT
MA0425.1 chr10 + 76674012 76674025 3.68e-06 0.214 ACCCCACCTTCTTC
MA0425.1 chr5 104189252 104189265 4.5e-06 0.214 ACCCCACCTCCGCC
MA0425.1 chr11 + 58166882 58166895 4.86e-06 0.214 ACCCCACCCTTGGT
MA0425.1 chr12 70465438 70465451 4.86e-06 0.214 ACCCCACTATGGTG
MA0425.1 chr19 44460438 44460451 5.31e-06 0.214 ACCCCACTCCCTCT
MA0425.1 chr4 135730928 135730941 5.75e-06 0.214 ACCCCACACTTTGC
MA0425.1 chr7 148956901 148956914 5.75e-06 0.214 ACCCCACATCTGTC
MA0425.1 chr2 + 77015848 77015861 6.12e-06 0.214 ACCCCACCTCTTTC
MA0425.1 chr3 + 97461978 97461991 6.12e-06 0.214 ACCCCACCCTCGGC
MA0425.1 chr13 + 73580931 73580944 6.12e-06 0.214 ACCCCACATCCTCT
MA0425.1 chr4 + 118293186 118293199 6.91e-06 0.229 ACCCCACCCCCGGG
MA0425.1 chr16 + 8687059 8687072 7.47e-06 0.235 ACCCCACCCTCTGT
MA0425.1 chr6 + 38874210 38874223 8.01e-06 0.24 ACCCCACCCCTGTG
MA0425.1 chr11 107309080 107309093 8.5e-06 0.243 ACCCCACATCAGTT
MA0425.1 chr4 + 128533084 128533097 1.03e-05 0.249 ACCCCACTCCTCTG
MA0425.1 chr9 + 24715290 24715303 1.03e-05 0.249 ACCCCACTATCTGT
MA0425.1 chr14 + 70866370 70866383 1.03e-05 0.249 ACCCCACCCCCGTG
MA0425.1 chr15 58719631 58719644 1.03e-05 0.249 ACCCCACACCCGCA
MA0425.1 chr11 + 102226551 102226564 1.18e-05 0.255 ACCCCACCCCCTTG
MA0425.1 chr17 + 25716466 25716479 1.18e-05 0.255 ACCCCGCCTTCTCA
MA0425.1 chr17 + 26079581 26079594 1.18e-05 0.255 ACCCCACCTAAGTG
MA0425.1 chr9 118353266 118353279 1.24e-05 0.257 CCCCCACTTTGTTA
MA0425.1 chr4 + 134960977 134960990 1.32e-05 0.257 GCCCCACCTTTTGC
MA0425.1 chr2 93306913 93306926 1.49e-05 0.257 ACCCCACACCCTCC
MA0425.1 chr9 107206887 107206900 1.49e-05 0.257 ACCCCACTCAGTTC
MA0425.1 chr17 + 29575370 29575383 1.49e-05 0.257 ACCCCACCCCAACG
MA0425.1 chr19 + 55293527 55293540 1.49e-05 0.257 ACCCCACCCCTACA
MA0425.1 chr8 87495024 87495037 1.58e-05 0.257 ACCCCACCCAGTGG
MA0425.1 chr9 + 57618906 57618919 1.67e-05 0.257 ACCCCACCCTTCCC
MA0425.1 chr11 + 61433813 61433826 1.67e-05 0.257 ACCCCACCCTGCCT
MA0425.1 chr11 101309699 101309712 1.67e-05 0.257 GCCCCACCCTTGGG
MA0425.1 chr17 + 28946101 28946114 1.67e-05 0.257 ACCCCACCATGGCC
MA0425.1 chr1 + 169323157 169323170 1.75e-05 0.257 GCCCCACCCTGTGG
MA0425.1 chr7 + 25940676 25940689 1.75e-05 0.257 GCCCCACCCTGTGG
MA0425.1 chr2 + 28463350 28463363 1.86e-05 0.257 ACCCCACTTATCTC
MA0425.1 chr7 35754261 35754274 2.08e-05 0.257 CCCCCACCTTGGTG
MA0425.1 chr12 + 80012834 80012847 2.08e-05 0.257 GCCCCACCCTCGGG
MA0425.1 chr12 + 102194504 102194517 2.08e-05 0.257 ACCCCACCCAGTCA
MA0425.1 chr17 26651636 26651649 2.08e-05 0.257 ACCCCACCCATGTG
MA0425.1 chr2 164599737 164599750 2.19e-05 0.257 ACCCCACTGCTTCA
MA0425.1 chr4 + 129141212 129141225 2.19e-05 0.257 ACCCCACCCTACCC
MA0425.1 chr11 74652199 74652212 2.19e-05 0.257 ACCCCGCCCTTTCA
MA0425.1 chr13 104819666 104819679 2.19e-05 0.257 CCCCCACTTCTTCC
MA0425.1 chr5 + 138127229 138127242 2.29e-05 0.257 ACCCCACCCCCACC
MA0425.1 chr11 90524347 90524360 2.29e-05 0.257 ACCCCACCCCCAGC
MA0425.1 chr14 119195501 119195514 2.29e-05 0.257 ACCCCACCCCCACC
MA0425.1 chr6 38874115 38874128 2.41e-05 0.257 ACCCCACTCAGATC
MA0425.1 chr7 + 28320579 28320592 2.41e-05 0.257 ACCCCACATTCAAC
MA0425.1 chr8 125244375 125244388 2.41e-05 0.257 ACCCCGCCTCCGCC
MA0425.1 chr16 34031860 34031873 2.41e-05 0.257 ACCCCACACAGGCC
MA0425.1 chr17 + 25716539 25716552 2.41e-05 0.257 ACCCCACCCCAACC
MA0425.1 chr15 + 98886948 98886961 2.55e-05 0.263 ACCCCACCCTTTAC
MA0425.1 chr19 5846363 5846376 2.55e-05 0.263 ACCCCACCCCAAGT
MA0425.1 chr6 + 57653649 57653662 2.69e-05 0.269 ACCCCACTGTCTTT
MA0425.1 chr7 + 20250801 20250814 2.69e-05 0.269 ACCCCTCTCTGGCT
MA0425.1 chr5 33375040 33375053 3.11e-05 0.282 ACCCCACTCGGGTC
MA0425.1 chr13 81067760 81067773 3.11e-05 0.282 ACCCCACCCCACCA
MA0425.1 chr19 24348735 24348748 3.11e-05 0.282 GCCCCACCTCCTGT
MA0425.1 chr5 77087502 77087515 3.27e-05 0.282 ACCCCACCCACTGC
MA0425.1 chr6 136416886 136416899 3.27e-05 0.282 ACCCCACCCCCATT
MA0425.1 chr7 38964067 38964080 3.27e-05 0.282 ACCCCACTCATGAA
MA0425.1 chr7 128112895 128112908 3.27e-05 0.282 ACCCCACCCAGACA
MA0425.1 chr9 121335700 121335713 3.27e-05 0.282 ACCCCACCTCCAAA
MA0425.1 chr15 79758342 79758355 3.27e-05 0.282 ACCCCACCCCAATC
MA0425.1 chr17 47735252 47735265 3.27e-05 0.282 ACCCCACCCACTCC
MA0425.1 chr4 + 111174235 111174248 3.44e-05 0.288 ACCCCACCCTATAT
MA0425.1 chr5 + 109105713 109105726 3.6e-05 0.288 ACCCCACCTGGATG
MA0425.1 chr7 + 148976519 148976532 3.6e-05 0.288 ACCCCACTCAATAG
MA0425.1 chr9 122282276 122282289 3.6e-05 0.288 GCCCCACCCTGACA
MA0425.1 chr1 + 135693980 135693993 3.76e-05 0.288 GCCCCACCCTATCC
MA0425.1 chr8 3522204 3522217 3.76e-05 0.288 GCCCCACCTTTCTA
MA0425.1 chr15 83253283 83253296 3.76e-05 0.288 CCCCCACTTTCCCC
MA0425.1 chr18 85054532 85054545 3.76e-05 0.288 GCCCCACCCTCTGT
MA0425.1 chr5 64979478 64979491 3.92e-05 0.288 ACCCCACCCCCCTA
MA0425.1 chr15 + 82060394 82060407 3.92e-05 0.288 GCCCCACCCTGTTT
MA0425.1 chr18 + 74156827 74156840 3.92e-05 0.288 ACCCCGCTCTTCTC
MA0425.1 chr4 155336073 155336086 4.11e-05 0.288 ACCCCACCCTAAAA
MA0425.1 chr9 + 20561674 20561687 4.11e-05 0.288 GCCCCACCTTTTAA
MA0425.1 chr12 70860508 70860521 4.11e-05 0.288 ACCCCACACAGAGC
MA0425.1 chr13 104819601 104819614 4.11e-05 0.288 GCCCCACTCCATTT
MA0425.1 chr1 + 9738455 9738468 4.3e-05 0.288 ACCCCGCACTCACA
MA0425.1 chr1 135694129 135694142 4.3e-05 0.288 GCCCCACCCTGAGC
MA0425.1 chr5 143682427 143682440 4.3e-05 0.288 CCCCCACTTTTGAT
MA0425.1 chr7 + 6315945 6315958 4.49e-05 0.288 GCCCCACCTTTCTC
MA0425.1 chr7 + 107641281 107641294 4.49e-05 0.288 CCCCCACTCCTACG
MA0425.1 chr8 + 97257707 97257720 4.49e-05 0.288 GCCCCTCTTTCTGG
MA0425.1 chr12 78031313 78031326 4.49e-05 0.288 GCCCCGCTCTGGCT
MA0425.1 chr2 + 84682294 84682307 4.69e-05 0.288 GCCCCACCCCTGCT
MA0425.1 chr4 46419950 46419963 4.69e-05 0.288 ACCCCACCCTCCAG
MA0425.1 chr4 + 135734039 135734052 4.69e-05 0.288 GCCCCACCCTGATA
MA0425.1 chr10 128184858 128184871 4.69e-05 0.288 GCCCCACACTTCGG
MA0425.1 chr15 + 76884026 76884039 4.69e-05 0.288 ACCCCGCTTGCTCA
MA0425.1 chr7 + 25940661 25940674 4.88e-05 0.288 CCCCCACATCTGTA
MA0425.1 chr9 107206892 107206905 4.88e-05 0.288 ACCCCACCCCACTC
MA0425.1 chr1 135694231 135694244 5.08e-05 0.288 ACCCCTCATTAAGA
MA0425.1 chr7 111007745 111007758 5.08e-05 0.288 ACCCCACCCAGCTG
MA0425.1 chr10 + 40924903 40924916 5.08e-05 0.288 ACCCCGCCCCAGGC
MA0425.1 chr5 129513273 129513286 5.29e-05 0.288 ACCCCACACAAACC
MA0425.1 chr8 97964452 97964465 5.29e-05 0.288 GCCCCACTGTGGCC
MA0425.1 chr16 8764987 8765000 5.29e-05 0.288 ACCCCACAGTCACA
MA0425.1 chr16 32509970 32509983 5.29e-05 0.288 GCCCCACCCTCAGC
MA0425.1 chr17 + 24340139 24340152 5.29e-05 0.288 GCCCCACCCTCAGC
MA0425.1 chr19 44460423 44460436 5.29e-05 0.288 ACCCCACACAGATC
MA0425.1 chr8 122895802 122895815 5.51e-05 0.288 GCCCCACCCCAGGC
MA0425.1 chr18 80416962 80416975 5.51e-05 0.288 GCCCCACTGTGGCT
MA0425.1 chr8 83025165 83025178 5.74e-05 0.288 ACCCCACTCCCCAT
MA0425.1 chr14 70866209 70866222 5.74e-05 0.288 GCCCCACCCCAGCT
MA0425.1 chr5 140280105 140280118 5.96e-05 0.288 CCCCCGCCTTGTGG
MA0425.1 chr7 + 16987355 16987368 5.96e-05 0.288 CCCCCTCTTTGGGG
MA0425.1 chr7 + 149566253 149566266 5.96e-05 0.288 ACCCCTCCTCCTCC
MA0425.1 chr1 9738678 9738691 6.18e-05 0.288 CCCCCACCTTCCGA
MA0425.1 chr2 + 103962065 103962078 6.18e-05 0.288 GCCCCACCCCATGT
MA0425.1 chr9 44773778 44773791 6.18e-05 0.288 CCCCCACCCTCGCT
MA0425.1 chr9 90157110 90157123 6.18e-05 0.288 GCCCCACCCTGCCC
MA0425.1 chr11 58166772 58166785 6.18e-05 0.288 GCCCCACACCTAGA
MA0425.1 chr2 167256585 167256598 6.42e-05 0.288 CCCCCACTCCCAGA
MA0425.1 chr3 95469257 95469270 6.42e-05 0.288 ACCCCACAACAAGC
MA0425.1 chr4 + 9588340 9588353 6.42e-05 0.288 ACCCCGCCCTTGAA
MA0425.1 chr4 + 111203436 111203449 6.42e-05 0.288 ACCCCTCACTATGA
MA0425.1 chr7 139969758 139969771 6.42e-05 0.288 GCCCCACTGCTTGG
MA0425.1 chr8 + 87362619 87362632 6.42e-05 0.288 GCCCCACCCTGCCT
MA0425.1 chr8 109927493 109927506 6.42e-05 0.288 GCCCCACCCTTCCC
MA0425.1 chr11 + 102236643 102236656 6.42e-05 0.288 GCCCCACTTGATCT
MA0425.1 chr14 63796699 63796712 6.42e-05 0.288 GCCCCGCCTCCTCG
MA0425.1 chr17 12397931 12397944 6.42e-05 0.288 GCCCCACCCTGCCT
MA0425.1 chr19 5922410 5922423 6.42e-05 0.288 GCCCCACCCTTCCC
MA0425.1 chr2 24832765 24832778 6.67e-05 0.288 ACCCCACCAACTGA
MA0425.1 chr6 + 86027841 86027854 6.67e-05 0.288 ACCCCTCCTCTTTT
MA0425.1 chr12 + 27136225 27136238 6.67e-05 0.288 GCCCCACCCTGCTA
MA0425.1 chr14 69940227 69940240 6.67e-05 0.288 ACCCCGCCCCCTTC
MA0425.1 chr18 32702081 32702094 6.67e-05 0.288 ACCCCACAGCAGGT
MA0425.1 chr9 + 107198878 107198891 6.92e-05 0.288 GCCCCACTCGGGCA
MA0425.1 chr11 60988917 60988930 6.92e-05 0.288 GCCCCGCCTCTTTG
MA0425.1 chr11 60988933 60988946 6.92e-05 0.288 GCCCCACCCCTCCG
MA0425.1 chr13 81067755 81067768 6.92e-05 0.288 ACCCCACCACGCCC
MA0425.1 chr15 62052589 62052602 6.92e-05 0.288 GCCCCACTGTCAGG
MA0425.1 chr19 56466323 56466336 6.92e-05 0.288 GCCCCACCCCAGTC
MA0425.1 chr4 126645671 126645684 7.17e-05 0.288 ACCCCTCACTGACA
MA0425.1 chr8 + 73222621 73222634 7.17e-05 0.288 GCCCCACCCCCATG
MA0425.1 chr8 + 122302906 122302919 7.17e-05 0.288 ACCCCACCGTCCGA
MA0425.1 chr9 59598636 59598649 7.17e-05 0.288 GCCCCGCCTCCGCA
MA0425.1 chr9 + 90156995 90157008 7.17e-05 0.288 ACCCCTCTATTTCC
MA0425.1 chr11 + 102226637 102226650 7.17e-05 0.288 ACCCCACCCACCCT
MA0425.1 chr15 103088843 103088856 7.17e-05 0.288 ACCCCGCCCTGCTC
MA0425.1 chr17 + 45710264 45710277 7.17e-05 0.288 GCCCCGCCCTTGGA
MA0425.1 chr3 + 89612495 89612508 7.41e-05 0.288 ACCCCACCACACCA
MA0425.1 chr9 + 108243310 108243323 7.41e-05 0.288 GCCCCACCCTTTAA
MA0425.1 chr13 + 76003320 76003333 7.41e-05 0.288 ACCCCACCACCCTG
MA0425.1 chr5 + 45951962 45951975 7.67e-05 0.288 ACCCCTCACTCTTA
MA0425.1 chr13 + 113639602 113639615 7.67e-05 0.288 ACCCCTCCTACTGG
MA0425.1 chr13 + 35887927 35887940 7.67e-05 0.288 GCCCCACCCTCCCT
MA0425.1 chr13 + 81067813 81067826 7.67e-05 0.288 ACCCCACTAATGAA
MA0425.1 chr17 + 28946077 28946090 7.67e-05 0.288 ACCCCACCCGCACA
MA0425.1 chr4 + 153401021 153401034 7.95e-05 0.288 CCCCCACCCCAGGA
MA0425.1 chr5 + 118933784 118933797 7.95e-05 0.288 GCCCCACCCCCACC
MA0425.1 chr5 129513353 129513366 7.95e-05 0.288 GCCCCACCCTGGAT
MA0425.1 chr5 + 130456279 130456292 7.95e-05 0.288 GCCCCACCCCCACC
MA0425.1 chr5 + 130456285 130456298 7.95e-05 0.288 CCCCCACCCCAGCA
MA0425.1 chr6 + 35303909 35303922 7.95e-05 0.288 GCCCCACCCCCACC
MA0425.1 chr7 148354616 148354629 7.95e-05 0.288 GCCCCGCCCTGGGC
MA0425.1 chr11 + 90548055 90548068 7.95e-05 0.288 ACCCCACCAAGTTC
MA0425.1 chr15 98860391 98860404 7.95e-05 0.288 GCCCCACCCAGGCC
MA0425.1 chr1 + 9738450 9738463 8.24e-05 0.288 ACCCCACCCCGCAC
MA0425.1 chr5 97380805 97380818 8.24e-05 0.288 GCCCCTCTTCTAGG
MA0425.1 chr6 + 120124637 120124650 8.24e-05 0.288 ACCCCTCTCAGGCT
MA0425.1 chr8 + 74937925 74937938 8.24e-05 0.288 GCCCCACCCAGGGT
MA0425.1 chr9 66352158 66352171 8.24e-05 0.288 ACCCCGCCATGTTT
MA0425.1 chr12 85792303 85792316 8.24e-05 0.288 GCCCCACCCACGGA
MA0425.1 chr15 34829932 34829945 8.24e-05 0.288 GCCCCACCCCAACC
MA0425.1 chr15 95715854 95715867 8.24e-05 0.288 GCCCCGCCCTGGGT
MA0425.1 chr16 + 32509253 32509266 8.24e-05 0.288 ACCCCGCCCAGTCT
MA0425.1 chr19 56466361 56466374 8.24e-05 0.288 GCCCCACCCCAACC
MA0425.1 chr4 154285968 154285981 8.54e-05 0.289 GCCCCACCCCAACT
MA0425.1 chr8 + 73367414 73367427 8.54e-05 0.289 ACCCCACAAACTTA
MA0425.1 chr9 + 44096705 44096718 8.54e-05 0.289 ACCCCTCATTGCTT
MA0425.1 chr9 59598218 59598231 8.54e-05 0.289 CCCCCACTTGTTCC
MA0425.1 chr14 69940048 69940061 8.54e-05 0.289 GCCCCACCATAGTA
MA0425.1 chr6 + 83115650 83115663 8.82e-05 0.289 ACCCCGCCCCGCCT
MA0425.1 chr7 16987659 16987672 8.82e-05 0.289 CCCCCACCCCCGCC
MA0425.1 chr7 + 71081518 71081531 8.82e-05 0.289 ACCCCACCCACCTT
MA0425.1 chr12 + 71933863 71933876 8.82e-05 0.289 ACCCCTCCCCCTCA
MA0425.1 chr15 + 62052896 62052909 8.82e-05 0.289 GCCCCACCTGGTCC
MA0425.1 chr2 103797892 103797905 9.11e-05 0.289 CCCCCACTCCTCCT
MA0425.1 chr2 157978612 157978625 9.11e-05 0.289 ACCCCTCCCCTTCT
MA0425.1 chr4 + 118862598 118862611 9.11e-05 0.289 ACCCCACAGAGGGC
MA0425.1 chr4 + 128533120 128533133 9.11e-05 0.289 GCCCCACACATTCC
MA0425.1 chr5 + 121049801 121049814 9.11e-05 0.289 CCCCCACCCCCGCT
MA0425.1 chr8 24255141 24255154 9.11e-05 0.289 CCCCCACTCCCCTG
MA0425.1 chr12 114390724 114390737 9.11e-05 0.289 ACCCCGCCCAAGGC
MA0425.1 chr19 5846033 5846046 9.11e-05 0.289 CCCCCACCCTGCTG
MA0425.1 chr2 + 31940993 31941006 9.41e-05 0.291 GCCCCACCACGGCC
MA0425.1 chr4 153400891 153400904 9.41e-05 0.291 CCCCCACTACAGCA
MA0425.1 chr8 125244380 125244393 9.41e-05 0.291 GCCCCACCCCGCCT
MA0425.1 chr17 47735327 47735340 9.41e-05 0.291 CCCCCACCCCTGTC
MA0425.1 chr1 + 75176011 75176024 9.73e-05 0.291 ACCCCACCAGCTGG
MA0425.1 chr2 32629436 32629449 9.73e-05 0.291 CCCCCACCCCCTGT
MA0425.1 chr9 + 98390201 98390214 9.73e-05 0.291 GCCCCACCCCACCA
MA0425.1 chr12 + 58298910 58298923 9.73e-05 0.291 ACCCCGCTGCTGTT
MA0425.1 chr13 + 113538174 113538187 9.73e-05 0.291 GCCCCACCCAGGTC
MA0425.1 chr14 119195316 119195329 9.73e-05 0.291 CCCCCACCCCATGC
MA0425.1 chr15 85935983 85935996 9.73e-05 0.291 GCCCCACCCTCAAG
MA0425.1 chr16 10384420 10384433 9.73e-05 0.291 GCCCCACCCCTCCT

DEBUGGING INFORMATION

Command line:

/Users/cegrant/meme_4.10.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_6 --bgfile memechip_example_output_files/background --motif MA0425.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa

Settings:

output directory = memechip_example_output_files/fimo_out_6 MEME file name = JASPAR_CORE_2009.meme sequence file name = memechip_example_output_files/sample-dna-Klf1.fa
background file name = memechip_example_output_files/background allow clobber = true compute q-values = true
parse genomic coord. = true text only = false scan both strands = true
max sequence length = 250000000 output threshold = 0.0001 threshold type = p-value
max stored scores = 100000 pseudocount = 0.1 verbosity = 1
selected motif = MA0425.1

This information can be useful in the event you wish to report a problem with the FIMO software.


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