MEME

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use MEME in your research, please cite the following paper:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

Discovered Motifs   |   Block diagrams of Motifs   |   Program information   |   Explanation

Discovered Motifs

Motif Overview

Motif 1
  • 8.1e-229
  • 285 sites
Motif 1 Logo Motif 1 Logo
Motif 2
  • 3.2e-026
  • 176 sites
Motif 2 Logo Motif 2 Logo
Motif 3
  • 1.7e-001
  • 30 sites
Motif 3 Logo Motif 3 Logo

Further Analysis

Submit all motifs to  
      
      
      
 Mouse-over buttons for more information.

Motif 1

Next Top

Summary

Sequence Logo

E-value 8.1e-229
Width 11
Sites 285
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[TA]GGG[TC]G[TG]GG[CT][CT]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr17:84179515-84179615 + 44 2.11e-07 GATCTGGTGC TGGGTGTGGCC TGTATGGACC
chr17:85277579-85277679 - 85 2.11e-07 GCTCC TGGGTGTGGCC AGCAAGGGCC
chr7:19832207-19832307 - 36 2.11e-07 TCAGACATCT TGGGTGTGGCC TGGGGCTTTT
chr4:135730666-135730766 + 38 2.11e-07 AGCCCAACCC TGGGTGTGGCC TTCTGCTTTG
chr16:6504644-6504744 - 8 2.11e-07 TCAGCATGGT TGGGTGTGGCC TCAGCAT
chr10:57527585-57527685 - 34 2.11e-07 GCTGTCTCTA TGGGTGTGGCC ATAGAACTGT
chr7:139969684-139969784 - 25 2.11e-07 ACTGGGGTGC TGGGTGTGGCC TCTGAGGCTG
chr19:53259937-53260037 + 12 2.11e-07 CCAGCTCCTG TGGGTGTGGCC CACCACATTC
chr17:43466518-43466618 - 25 2.11e-07 CAAGGCAAGC TGGGTGTGGCC CTCCCAGGGT
chr15:58828420-58828520 - 75 6.43e-07 TGCCTCTGGC AGGGTGTGGCC CATCACATGG
chr4:128724869-128724969 - 81 6.43e-07 CCGGAGAGG AGGGTGTGGCC TTTGATTTGT
chr2:156710230-156710330 - 87 6.43e-07 TGT TGGGTGTGGCT ATCCCTGGTT
chr1:137838164-137838264 + 27 6.43e-07 CATGGAGAGA TGGGTGTGGCT CTCTCTCCAG
chr5:139858102-139858202 - 39 6.43e-07 TAAAAAAACC TGGGTGTGGCT TCACCTGCAG
chr5:27985060-27985160 - 78 6.43e-07 GATGGGCAGT AGGGTGTGGCC TCAGTGTTAT
chr9:21940049-21940149 - 10 6.43e-07 CCTGGACACT TGGGTGTGGCT CAGTGGTAG
chr5:65255865-65255965 - 7 6.43e-07 GTGAGAATGT TGGGTGTGGCT GCCCAG
chr3:51492458-51492558 + 28 6.43e-07 AGCAGGAGTA TGGGTGTGGCT CTTATAAACC
chr6:86027772-86027872 + 27 6.43e-07 CATGGCAGAC AGGGTGTGGCC GAGTCTCTTG
chr18:61379741-61379841 - 59 6.43e-07 GAAGAGAGAA TGGGTGTGGCT CCTTTTCACC
chr4:124283413-124283513 - 54 6.43e-07 XXXXXXXXCA TGGGTGTGGCT TGACAGATAA
chr15:76083900-76084000 - 70 6.43e-07 GAAGAGGGAG AGGGTGTGGCC AAGGTAAAGG
chr1:133343883-133343983 + 39 6.43e-07 GGGTAGTTGT AGGGTGTGGCC TGATTGATCA
chr5:45951565-45951665 - 68 6.43e-07 TTGCCAGACC TGGGTGTGGCT CTGGGGCGTG
chr1:136638482-136638582 - 13 6.43e-07 GCCCATGTAG AGGGTGTGGCC CCTGCTTAGA
chr14:79702844-79702944 - 54 8.64e-07 CTAGGGAGGC AGGGTGTGGCT AACTTCAAAG
chr13:112833730-112833830 + 36 8.64e-07 AGTTCATGGC AGGGTGTGGCT GCTTCATCAT
chr7:28233711-28233811 - 42 8.64e-07 AAGGCTAGCA AGGGTGTGGCT CTTTATCTGG
chr4:128532893-128532993 - 66 8.64e-07 TAGTGGGCAG AGGGTGTGGCT TTCAGAATCT
chr13:3866266-3866366 - 70 8.64e-07 CCAACCCAGA AGGGTGTGGCT GAACGGCTAG
chr16:91352914-91353014 - 62 8.64e-07 CCAGTGACTC AGGGTGTGGCT GCTGAGCATG
chr12:3795439-3795539 - 32 8.64e-07 GAGGGCGGTT AGGGTGTGGCT AGGTGATAGA
chr4:43977111-43977211 + 32 1.09e-06 TTCCCCTGGC TGGGTGTGGTC GCCAGTGATA
chr9:113850421-113850521 + 36 1.09e-06 GAAACAGCTT TGGGTGTGGTC ATGCTAGGGA
chr13:112863645-112863745 - 75 1.09e-06 TATGCAGATT TGGGTGTGGTC AGAGTGTGAG
chr15:81700367-81700467 - 35 1.09e-06 TGAGCCAAAC TGGGTGTGGTC TAATAAAGAG
chr17:26079525-26079625 - 89 1.94e-06 A AGGGTGTGGTC CCTTAGTGTT
chr11:69186641-69186741 + 67 1.94e-06 CCCTTCTCAG TGGGTGTGGTT CTTATCTCCT
chr6:72324694-72324794 + 84 1.94e-06 ATCAAGAAGT AGGGTGTGGTC GTGCTT
chr13:3862103-3862203 + 20 1.94e-06 GGGAGACGCC TGGGTGTGGTT GCTCAGCCAA
chr10:111261811-111261911 + 46 1.94e-06 GGGAGCAGGA AGGGTGTGGTC TGCCAAAGTC
chr1:173210952-173211052 - 15 1.94e-06 GGAGATAGCG TGGGCGTGGCC CTTATCTGCA
chr17:25039619-25039719 + 42 1.94e-06 CACTGTCACC AGGGTGTGGTC ACTTAACTGC
chr7:105490727-105490827 - 39 1.94e-06 GTGGGTGTGG TGGGTGTGGTT CAGGTCTTAG
chr14:63796627-63796727 - 50 1.94e-06 ATCAAATTCT AGGGTGTGGTC ATCGCGCCAG
chr19:10736425-10736525 + 39 1.94e-06 AACATATGTG AGGGTGTGGTC ACAGGGGGAG
chr9:107206718-107206818 + 23 1.94e-06 GTGATAACTT TGGGTGTGGTT CACTCCCAAT
chr4:118241267-118241367 + 45 1.94e-06 GCCAACACTG TGGGTGTGGTT CAATCTGGAC
chr10:41632091-41632191 - 38 1.94e-06 TGCACATTGC TGGGCGTGGCC CTTGCGTTAT
chr18:85054319-85054419 + 19 3.00e-06 GCAAACACAG AGGGTGGGGCC TGCCCCATGC
chr11:96817330-96817430 + 79 3.00e-06 GGGAGAGAAA AGGGTGTGGTT CAGGAAAGGA
chr11:86427476-86427576 - 28 3.00e-06 CTAGTCACTG TGGGTGGGGCT GGGAAATGGA
chr1:134979850-134979950 - 18 3.00e-06 TGTGAGGTGC TGGGTGGGGCT CCTGCTTGGC
chr9:44096486-44096586 - 62 3.00e-06 ACTTTAGGGT TGGGTGGGGCT GCGCTCCAAA
chr3:89612431-89612531 - 71 3.00e-06 GGGCAGAGAG AGGGCGTGGCC AGCATGTGGA
chr7:25993969-25994069 - 48 3.00e-06 GTCACCTGGC AGGGTGTGGTT GGCTTAGGTT
chr5:123643388-123643488 + 38 3.00e-06 CAAGGCCATT TGGGTGGGGCT GCTTTTTTAT
chr9:108243080-108243180 - 31 3.00e-06 AGATATTTAA AGGGTGGGGCC CAAGCAGTAG
chr10:60612190-60612290 + 19 3.00e-06 TACTCAAATG AGGGTGTGGTT AGCAATGGCA
chr15:82060183-82060283 - 12 3.85e-06 ACTGATAAAC AGGGTGGGGCT GGAAGGATGC
chr5:64826642-64826742 - 85 3.85e-06 TGCAC TGGGTGTGGCA GTGGGTGGGG
chr11:101309433-101309533 + 72 3.85e-06 GCTCCGCCCA AGGGTGGGGCT GTATGCTCAG
chr10:107550274-107550374 + 80 3.85e-06 CAGTGCGAAC AGGGCGTGGCT GCACTGTGCG
chr14:41760574-41760674 - 67 3.85e-06 TTGACTCCTT TGGGTGTGGCA CAAACAACAA
chr5:139672808-139672908 - 60 3.85e-06 ACTGTGGTTC TGGGTGTGGCA GGGAGGGGCA
chr5:89056517-89056617 - 42 3.85e-06 GGGTAGGACA TGGGTGTGGCA CAGCAACACC
chr2:25742741-25742841 + 37 3.85e-06 TGGCTCTTCC TGGGTGTGGCA CTGGGGCATC
chr12:80012617-80012717 - 18 3.85e-06 GCCTCTCCCG AGGGTGGGGCT GGGTGTGTAA
chr11:90524332-90524432 + 26 3.85e-06 AGGCCCGAAG TGGGTGTGGCA GGTGATAGGC
chr8:108344711-108344811 - 63 4.28e-06 TGACACATGG AGGGTGTGGCA GTCCTGGCTG
chr1:169314208-169314308 - 19 4.28e-06 GGAACAACCC AGGGTGTGGCA GAGGCTGCCT
chr4:153535135-153535235 + 35 4.90e-06 CTGCACTCCT TGGGCGTGGTC ACCTTGGGAG
chr6:81915769-81915869 + 1 4.90e-06 GGGGTGTGGCC GGACGGTGGC
chr11:117187372-117187472 + 46 4.90e-06 AGAGGGAGGA GGGGTGTGGCC TCAGAGAACC
chr7:111007530-111007630 + 21 4.90e-06 TAGTGTCAGC TGGGTGGGGTC ACAGACTGTG
chr2:167454295-167454395 - 49 4.90e-06 TATACACGCA GGGGTGTGGCC TCATGCACAC
chr12:102194283-102194383 - 22 6.17e-06 AGCTGTTGAC TGGGTGGGGTT GGGCTTGATA
chr3:84162553-84162653 + 66 6.17e-06 GGTGAGGGAA GGGGTGTGGCT CATGCAAAAT
chr4:111173963-111174063 - 73 6.17e-06 GCTCTGATAT AGGGTGGGGTC TTACAAGCAT
chr19:6300361-6300461 + 2 6.17e-06 C TGGGTGGGGTT GGTTAGAGCC
chr2:28462972-28463072 + 2 6.17e-06 A TGGGCGGGGCC CACCACACCC
chr6:142838756-142838856 + 70 6.17e-06 GGAGGGAGGG AGGGCGTGGTC TGGGAGTGTC
chr11:115374474-115374574 - 33 7.46e-06 TGTCTGTGCT TGGGCGGGGCT AGGGAGCCAT
chr17:45884716-45884816 - 48 7.46e-06 TCCTACCTCA TGGGTGTGGTA GCTTGGAGAT
chr5:30289969-30290069 - 54 7.46e-06 GTGCTCTAGG TGGGTGTGGTG GCCAGACTCC
chr11:115367840-115367940 - 81 7.46e-06 TGTCAGCAG TGGGTGTGGTG GTGACAGACG
chr9:120025371-120025471 + 2 7.46e-06 C TGGGTGTGGTG GGCCGACCTG
chr2:93306457-93306557 + 31 7.46e-06 TGGGACTGTA AGGGCGGGGCC TGGGTAGATA
chr7:128850883-128850983 + 3 7.46e-06 TT AGGGCGTGGTT CTGCGTGTTG
chr2:24832341-24832441 + 44 7.46e-06 AAGAACATAG AGGGCGTGGTT GCTGTGCTCT
chr6:34857296-34857396 - 18 7.46e-06 CTGATAAATT TGGGTGTGGTG GAGGCCCAGC
chr1:155596606-155596706 + 14 8.93e-06 CTAGCTGCTC TGGGTGGGGCG GAGAGCCAGT
chr15:95715580-95715680 + 80 8.93e-06 GGTGGGACCC AGGGCGGGGCT AGTAACACTG
chr5:108943418-108943518 - 4 8.93e-06 GTGTGGTAGA AGGGTGTGGTA GAA
chr3:145253492-145253592 - 62 8.93e-06 ACAGTCAGCA AGGGTGTGGTG GCAGTTTATC
chr15:83139085-83139185 - 23 8.93e-06 TGGAGGCCAG AGGGTGTGGTG GATAAAACCC
chr15:91082416-91082516 - 46 8.93e-06 CTCTGCTGGG AGGGTGTGGTG CCTTTTATCT
chr7:139915433-139915533 + 48 8.93e-06 GAGCGCTGTC AGGGCGGGGCT GTTTTGTAAC
chr16:49777000-49777100 - 89 8.93e-06 G AGGGTGTGGTG GCAACTATTA
chr12:70394726-70394826 - 55 8.93e-06 CAGATAGGAG TGGGTGGGGCA GAGGAAAGTT
chr7:103853792-103853892 + 88 8.93e-06 AATGACAGTA TGGGCGTGGCA AG
chr8:109927244-109927344 + 55 9.76e-06 CGCTAGGGGA AGGGTGGGGCA GCAAAACGGA
chr8:107823858-107823958 + 31 9.76e-06 TGATAAGTTC AGGGTGGGGCA GGTAGGGGAG
chr1:135693776-135693876 - 5 9.76e-06 TGAAGAGGAT AGGGTGGGGCA GGTA
chr1:169322898-169322998 - 60 9.76e-06 CCAGAACCAC AGGGTGGGGCA CCTGCAGGGT
chr5:65203207-65203307 + 42 1.02e-05 TCCGAAGTAC TGGGTGTGGGC AGAATCTTAT
chr3:79383670-79383770 - 50 1.02e-05 CACATTTATT TGGGTGTGGGC CTTCAGCACG
chr11:68709695-68709795 - 50 1.02e-05 CAGTGTCTGT TGGGTGTGGAC CTAGGTCTAC
chr5:96888622-96888722 + 28 1.17e-05 TGTGATGGCA TGGGTGTGGAT GGAGGAGGGA
chr11:104842983-104843083 + 83 1.17e-05 NNNTGCTCTC AGGGTGTGGAC ATTTAGT
chr16:14166506-14166606 + 28 1.17e-05 AGAGGGTAAA AGGGTGTGGGC CTGNNNNNNN
chr17:24289205-24289305 - 69 1.17e-05 GCCTGTGGTA TGGGTGTGGAT TGGGGGACAG
chr7:149571622-149571722 - 38 1.41e-05 CCACCTGACT GGGGTGTGGTT GGTGAGGGAA
chr19:6236070-6236170 + 42 1.41e-05 CCTGCTGGGA GGGGTGTGGTT CACTAGAGGC
chr14:56154883-56154983 - 41 1.41e-05 ACCAGGGGGC AGGGTGTGACC TGCAATGTCC
chr7:99891353-99891453 - 21 1.41e-05 ATTCCTAAAG GGGGTGTGGTT GACCCAAAGT
chr11:53839888-53839988 - 60 1.41e-05 GTAGACAGCT AGGGTGTGGGT CCCACCTGCA
chr7:148354574-148354674 + 44 1.41e-05 TGCCACGAAA TGGGTGTGACT GTGATGAGAG
chr12:112796794-112796894 + 36 1.41e-05 CTAAAGGGCC TGGGTGTGACT GGGTACATCT
chr1:77295122-77295222 - 19 1.41e-05 CTGAACAGAC AGGGTGTGACC TATCAGACGG
chr15:78243390-78243490 + 38 1.41e-05 ACAGTGACTT TGGGTGTGACT TCGCCTTAGG
chr3:60623496-60623596 + 32 1.41e-05 CTCAGACCAA TGGGTGTGCCC CTCTCCCACG
chr8:97257705-97257805 - 16 1.41e-05 TAGAGCCTGC AGGGTGTGACC AGTGTACTAA
chr2:31940725-31940825 + 63 1.58e-05 AGTCACACTA AGGGTGTGCCC CACCACGGCC
chr9:98389943-98390043 - 59 1.58e-05 CTGGCCTGGT GGGGTGGGGCT GAAGATAAGA
chr19:44460305-44460405 + 57 1.58e-05 AGATGCAGTT TGGGTGTGCCT CTAAAAGTCC
chr4:132847121-132847221 + 33 1.58e-05 AGATAGGGCA AGGGTGTGACT CAGTGGAAAG
chr5:115468250-115468350 - 23 1.58e-05 TGGAGGGAAG TGGGTGTGCCT GTCAGACTCA
chr4:44016940-44017040 + 84 1.58e-05 AGATGCAGTT TGGGTGTGCCT CTACAG
chr6:34107097-34107197 - 8 1.58e-05 GGACTGCTTT TGGGTGTGCCT GGGAGGT
chr12:114390660-114390760 + 63 1.58e-05 GCTGAGGAGA AGGGTGTGCCC AGGTTTAGTG
chr1:183078715-183078815 - 48 1.58e-05 AGGTGCGGCT TGGGTGTGCCT CTAAAAGCTC
chr4:44084689-44084789 - 66 1.77e-05 CTCGATAGGA GGGGTGTGGCG GCGGGGAATG
chr14:55043398-55043498 - 12 1.77e-05 GGAAGCAGTT AGGGTGTGCCT CTAAAAGTTT
chr5:77087237-77087337 + 71 1.77e-05 TTGGATGCAG TGGGTGGGGTA CTATGGCTTT
chr17:47735006-47735106 + 52 1.77e-05 TGGAGAGGAG TGGGTGGGGTG AAGGACACTT
chr7:128112657-128112757 + 44 1.77e-05 CCAGGGTGTC TGGGTGGGGTG CTGGTTACTG
chr17:29067183-29067283 - 11 1.77e-05 AATTGGGATA TGGGTGTGTCC CAGACGTGTC
chr18:13094467-13094567 - 44 1.77e-05 TATTCCTAGT TGGGCGTGGTA GGACTGTAGT
chr19:45865027-45865127 - 59 1.77e-05 GCTTGTTCAC TGGGCGTGGTG AATGGTAGGA
chr8:87494750-87494850 + 80 1.77e-05 GCCATCCCAC TGGGTGGGGTG GGTGGAGCAC
chr16:76323702-76323802 - 67 1.77e-05 CATCCCTACT TGGGTGTGTCC AGGGCACTTG
chr16:8686809-8686909 - 51 1.95e-05 GCTGTCACAG AGGGTGGGGTG ACCGTAATCA
chr16:44265654-44265754 + 3 1.95e-05 TC TGGGCGGGGCA GCACTTACTG
chr4:129140945-129141045 - 68 1.95e-05 AAGGTGGGGT AGGGTGGGGTG GGGAGCATGG
chr11:30901439-30901539 + 48 1.95e-05 CAGCAGATGT AGGGCGTGGTG TTATTGGAGA
chr17:33229103-33229203 + 70 1.95e-05 GGAACATGGA TGGGCGGGGCG GAAGTTCTTT
chr9:70682447-70682547 - 20 1.95e-05 GCACGCTGGC TGGGTGTGTCT GACTTCCCTG
chr10:126642277-126642377 - 59 1.95e-05 TAACAGAAAC TGGGTGTGTCT CTTCCCACTG
chr5:89197189-89197289 + 42 1.95e-05 TCTGATAGAT AGGGCGTGGTG CTCTTTAGAA
chr13:74873194-74873294 + 26 1.95e-05 TCCCACTCTC AGGGCGTGGTG CTCCCTACAC
chr18:80416880-80416980 - 46 1.95e-05 GGAGATAAGG TGGGTGTGTCT CCCAAGGGTG
chr10:93128960-93129060 + 7 1.95e-05 AACAAG TGGGTGTGTCT CAAAGCAAGT
chr11:115373883-115373983 - 77 2.01e-05 CAGCGCTTAC AGGGCGGGGCA GAACTGGAGA
chr2:131039492-131039592 - 65 2.57e-05 TGCCACACTT AGGGTGGGGAC AGATTAGCAA
chr4:151334552-151334652 + 9 2.57e-05 CAGAAACC TGGGTGGAGCC CCATAGGCTA
chr9:108709857-108709957 + 75 2.57e-05 TTGACAAGTT GGGGCGTGGTC CAGAAGGGAG
chr11:44322389-44322489 - 7 2.57e-05 GGCCGGCTGC TGGGTGGAGCC CAGCAG
chr3:88305500-88305600 + 33 2.57e-05 NNNNNTGCAA TGGGAGTGGCC TGAGGCTCCC
chr14:21299130-21299230 + 10 2.57e-05 CTGCAGCTT TGGGTGGAGCC GCGCAAGTGG
chr2:112350167-112350267 + 69 3.15e-05 TTTGTTTTGG AGGGCGTGGGT CTAGAAGTAG
chr6:83345790-83345890 + 71 3.15e-05 GGTGTCCTTG TGGGTGTGCTT CCCTCTCTGC
chr12:112505815-112505915 + 57 3.15e-05 AGAAACTGAC AGGGCGTGACC TCTGGAGTAG
chr5:28369135-28369235 - 66 3.15e-05 AGGGTGGAGA AGGGAGTGGCC AGGGCTCAGC
chr10:40924608-40924708 - 81 3.15e-05 GGGTGTGGC TGGGTGTGCTT TATCATCTCG
chr9:70774508-70774608 + 73 3.15e-05 TCTCCCCAGA AGGGAGTGGCC AGGGTTTCAG
chr13:73612725-73612825 + 47 3.15e-05 AGGCCACACC TGGGTGTGCTT AGGGTGTTTC
chr11:32168937-32169037 + 31 3.15e-05 GGCCAAGGGC TGGGTGGAGCT CACAGACGCT
chr4:62177553-62177653 - 85 3.66e-05 ACCCA GGGGTGTGGTG GCAGGGTTGG
chr8:85946912-85947012 + 59 3.66e-05 TATGCAACTG TGGGTGGGCCT CAGGGGACTC
chr6:57653289-57653389 - 72 3.66e-05 AAAAATTAAG AGGGCGTGACT TTAGCGTTTC
chr11:94858859-94858959 - 50 3.66e-05 AGGGGTGGCT GGGGTGTGGTA GGCTATTGTG
chr13:56459266-56459366 + 54 3.66e-05 CAGTCTTCTA AGGGCGTAGCT GATGCTGAGA
chr1:36976473-36976573 - 39 3.66e-05 AGCTCCTCTG AGGGTGGGACT TAACTCTCAG
chr8:24164440-24164540 - 27 4.09e-05 ACCATTGATA AGGGCGTGCCT GAGGTACTCC
chr19:55940204-55940304 + 60 4.09e-05 TGACAGTAAT AGGGTGTGACA CGGCATAACT
chr11:69759803-69759903 - 27 4.09e-05 TGGGGTGTGG TGGGCGGGGTA TATCAGGCAG
chr9:24715045-24715145 - 21 4.09e-05 CTGCATAAGC AGGGCGTGCCT TCTCCTTAGA
chr14:70865967-70866067 + 48 4.09e-05 ACTGGCAGCT GGGGTGGGGCG TTCCCCACTT
chr5:118933401-118933501 - 4 4.09e-05 TGGAGAACAC AGGGTGTGACG CAA
chr16:32508975-32509075 - 79 4.09e-05 AGCCAAAGAC TGGGCGGGGTA AGTCTGAGAA
chr4:118863136-118863236 - 51 4.09e-05 TCAGTTGGGG AGGGTGTGACG TGAGAGGAGG
chr4:9588078-9588178 - 63 4.33e-05 GCACTGTTCA AGGGCGGGGTG GGGAGGGGCC
chr6:135115628-135115728 - 38 4.33e-05 TGTGCTTAGT TGGGTGGGTCT TGAGAATGCT
chr17:47754580-47754680 - 35 4.33e-05 XXXXXXXXXX XGGGTGTGACC AACTCCTAAT
chr11:94195590-94195690 - 72 4.76e-05 ATTCTGCAAT TGGGTGGAGTC TTCTGCTGCA
chr9:21362671-21362771 + 60 4.76e-05 CCAACTCAGG AGGGTGTGTCA GACCTATCTT
chr4:134960762-134960862 + 42 4.76e-05 CTCTGCTAGC TGGGTGGAGTC ACCCCAGATA
chr17:48438407-48438507 + 54 4.76e-05 GACAGAGGGA TGGGTGGAGTC TTGGGCCAAA
chr11:50038238-50038338 - 79 5.27e-05 GGATCTGGCA TGGGAGGGGCC CGCTGTAGCC
chr2:164599351-164599451 + 77 5.27e-05 GCAAAGGAAA AGGGCGTAGTC CTTGAAGCAG
chr11:121295413-121295513 - 85 5.27e-05 AGATA AGGGTGGAGTC CTAGCCATGG
chr5:34915767-34915867 - 45 5.27e-05 GCTGTCAATC AGGGTGGAGTC AGGACTGAGA
chr11:69793285-69793385 - 51 5.27e-05 TGGAGTGGGA AGGGCGTAGTC TCCTGAAGGC
chr5:118929927-118930027 + 29 6.05e-05 CTCTGTTCAC TGGGTGAGGCT GACGGCCAGA
chr9:114375902-114376002 - 37 6.05e-05 TGCTCAGCAC AGGGTGAGGCC CAGGAAGGGG
chr13:100518008-100518108 - 81 6.05e-05 GGGCGGAAC TGGGCGGAGCT GTTTCTGCAG
chr3:88167296-88167396 + 13 7.05e-05 GAAGGGATAA AGGGTGAGGCT TGAAATCAAG
chr11:84636993-84637093 - 34 7.05e-05 GCAAGGCTGA TGGGTGGAGCA GACCGAAGAC
chr5:73746598-73746698 + 72 7.05e-05 GTAGAGAGGC TGGGTGGAGCA GGTGCAAAGT
chrX:146984104-146984204 - 31 7.05e-05 GGATGAGCCC AGGGCGTGGGA GAGAAGAAGA
chr11:102236405-102236505 - 15 7.05e-05 GCTGTTCTGA AGGGAGGGGCT GTCCCTCCTG
chr3:153454530-153454630 - 39 7.05e-05 AGATATGACA GGGGTGGGGTG GAGTGGGCGT
chr4:128287322-128287422 + 43 7.05e-05 CTAGATTAGA AGGGCGTGGGG TCGGGGTCTA
chr9:66763906-66764006 + 27 7.05e-05 GCTCTTTCCT GGGGCGTGGTG CTTATCAAAT
chr7:16987195-16987295 - 78 7.05e-05 CCGCCAGAGA AGGGCGTGGGG AACCCATTTC
chr7:148956813-148956913 + 38 7.78e-05 TGTCTCCTCT TGGGTGCGGCT GCGTTGTGGT
chr4:41334759-41334859 + 8 8.26e-05 TTCTAGA AGGGCGTGCCG GTTTGTTTAC
chr4:118862381-118862481 - 58 8.26e-05 GTGGGCAGAC AGGGCGTTGCT TGTTTGTTTA
chr1:157123773-157123873 - 44 8.26e-05 GAGGCACTGA CGGGCGTGGCC CCTGTGCCTT
chr1:92185726-92185826 - 41 8.91e-05 TCTAGTCAAG AGGGTGTAGAC GCCCTTCTGA
chr18:62325792-62325892 + 87 8.91e-05 CAGAGTTGGA GGGGTGGGGGC ACT
chr1:88208803-88208903 - 29 8.91e-05 GATTAAGACA GGGGTGGGGAC TTTCAAAAGC
chr12:82044358-82044458 + 44 9.72e-05 ACCTTCAGGG AGGGTGTAACC CGATTTCTGG
chr7:135432389-135432489 - 61 9.72e-05 GAGCTGCAGG AGGGTGTCGCC CAGTTTCTGG
chr10:59336305-59336405 + 16 1.04e-04 CAGACCACTT AGGGCGGAGTC CATTCGTCGT
chr15:98860006-98860106 - 59 1.04e-04 CACAGTGGGA GGGGTGGAGCT GAAGTTAGCT
chr5:37112216-37112316 + 55 1.04e-04 TGAGGCAGTG GGGGTGGAGCT GGGAAGAAAT
chr2:152650541-152650641 - 32 1.14e-04 GCACAGGTCT TGGGCGTAGTA GTCACTGATG
chr16:8829691-8829791 - 86 1.14e-04 TCAA TGGGCGGGGGG CTGGGGGAAG
chr7:148318028-148318128 + 47 1.14e-04 GGCTTGCAAG TGGGAGTGGTA ACTGAGGCAC
chr15:83253024-83253124 - 31 1.14e-04 GTGTGGTGAC TGGGTGTGTGT AGTCCTGTAC
chr18:32702023-32702123 - 89 1.14e-04 A TAGGCGTGGCC CCTCCACCCA
chr11:77795184-77795284 + 51 1.14e-04 GGCAGGTAGC TGGGCGTTGTC AGGATTACGG
chr7:91033422-91033522 - 44 1.27e-04 TCCTCGTTAC AGGGCGGGGAG CCAXXXXXXX
chr5:37127175-37127275 + 53 1.27e-04 AAATGGAACG TGGGAGGGGCA CAGTGAGGAC
chr16:34031622-34031722 + 10 1.27e-04 TTCTCAGAA AGGGTGCGGTC CCTGCGGCCC
chr7:149565910-149566010 + 33 1.27e-04 GGGAGGGGGA AGGGTGTGTGT AGGGAGGAGG
chr9:42909938-42910038 - 78 1.27e-04 TAGCTGGTTT TGGGCGTTGTT CTGTTTTGCA
chr15:73181612-73181712 - 74 1.27e-04 GCTGAGATGT AGGGAGTGGTA GTCCTTGATA
chr9:21069279-21069379 + 5 1.27e-04 TGGC AGGGCGGGGAA ATCTGCACTT
chr3:60589030-60589130 - 20 1.27e-04 TCCCAGCCAG TGGGCGTGCTG AAAGAAGGCT
chr11:105013714-105013814 - 74 1.27e-04 CTGGCCCGCT TGGGTGGTGTT GTAGTAATTT
chr5:144322338-144322438 + 20 1.35e-04 ACCAGGAGAC AAGGCGTGGCT GGAGGGCACA
chr12:41693216-41693316 + 76 1.35e-04 AAACCAAGCA GGGGCGTGTCT GCCTTCTGGC
chr17:26651347-26651447 + 82 1.35e-04 GGACACACAG TAGGTGTGGCA CATGGGTG
chr17:12378670-12378770 - 44 1.43e-04 GGTGCACTGA TGGGCGTAGAC ATATCAGGTC
chr19:24609087-24609187 + 64 1.43e-04 GCTGTTAGGT TGGGTGGGAAC ACAGGGCGGG
chr5:104483856-104483956 + 33 1.57e-04 GTAAAATACA TGGGCGTGAGT GCCTTGTGGA
chr7:139930395-139930495 - 53 1.57e-04 GGTATCTTTG TGGGAGTAGCC CTGGGGTTTG
chr15:56455064-56455164 + 46 1.57e-04 CAACTGTTGA GGGGCGGGGGC CGTAAATGCC
chr7:56247542-56247642 - 65 1.73e-04 TCAGTGATCC AGGGCGTGCAC AGGGCTCAGC
chr5:144685597-144685697 + 78 1.73e-04 NNNNNNNNNA TGGGTGGGCAT CTGTGATGGA
chr9:107198663-107198763 - 11 1.73e-04 GTGCCCGAGT GGGGCGGGACC TAGAGACTAG
chr18:57137388-57137488 + 77 1.73e-04 GCTAGACGTG TGGGTGTGAGA GGCAGTAGAT
chr4:111175599-111175699 - 73 1.73e-04 AGTCTATGCA TGGGTGTGAAA GCCCCAGCTG
chr13:107890789-107890889 + 42 1.89e-04 GGGCAAGGTA GGGGCGGAGCT CTATCTGGGA
chr4:32996229-32996329 - 52 1.89e-04 GTTCTACAGT GAGGTGTGGCC AGTGGTAGGC
chr9:57618594-57618694 + 45 1.89e-04 CAGATCAGCT AGGGTGGAACT TACACATCTT
chr16:34319203-34319303 - 64 1.89e-04 GCTGAGGGAG AGGGTGTGAAG AGGGCAGGAT
chr3:103708585-103708685 + 32 1.89e-04 CTCCCAGCAG AGGGTGTGAAG GTGTGTCCAT
chr15:36250679-36250779 + 42 2.08e-04 GCTGCTATTT TGGGCGTGTAT TAGTGAGTGC
chr1:88057041-88057141 - 38 2.08e-04 TCCTGCGGAT AGGGCGTGTGC CGCCATCCTC
chr10:93585404-93585504 + 23 2.08e-04 GCCAGAGAGA TGGGCGTATCC AGGGTGACCG
chr1:9738234-9738334 - 72 2.23e-04 AGTCTCAGTG AGGGCGTGTAT GTCTGTGTCT
chr14:69939827-69939927 + 27 2.36e-04 TCACCCTACT ATGGTGGGGCT GCCTGGGTGG
chr6:83115546-83115646 + 55 2.36e-04 CTTGTCAGCT AGGGCGAGGCA GCAGGAATGA
chr3:96232776-96232876 - 74 2.36e-04 TGGGTGTCTC TGGCTGTGGCA TGTGGGGATG
chr12:77866195-77866295 + 69 2.49e-04 ACCGTTGCTA TGGGCGGAGAC TTTTAGCCAG
chr6:136416751-136416851 - 12 2.86e-04 CCTCTTTGTT AGGGCGGAACC GCCCCATTCT
chr3:19550495-19550595 + 38 3.17e-04 GGGAAGATAA AGGGCGTTGGC ATGCCTGTGC
chr15:80591373-80591473 + 20 3.17e-04 AGATTAGAAA AGGGCGTAGAG CCTGTGCTCC
chr19:5963828-5963928 - 10 3.17e-04 TGTGACCTGG TGGCTGGGGTC GTTTGAGGG
chr1:135696219-135696319 + 5 3.17e-04 GAGA TGCGTGGGGCG GTGCCCTCAG
chr7:111009340-111009440 - 35 3.17e-04 XXXXGCTTAG GGTGTGTGGCC AGATGTTTTC
chr4:129974285-129974385 + 40 3.46e-04 CCTGGGGTCT TGGGCGTTCCC TCTCACTTTA
chr17:25716184-25716284 - 83 3.46e-04 AGGTGAG AAGGCGGGGTC CGGAAGCTCA
chr18:32719457-32719557 - 54 3.46e-04 CGTTCGGAAG TGGGCGGGTGT GTGTTTAAAA
chr16:38371687-38371787 - 45 3.46e-04 ACAGCGAGCA TGGGCGTTCCC CTGTGTAGGC
chr16:32449731-32449831 + 56 3.46e-04 CACGACGCTC AGGGCGTTACC TTAAGCCTCT
chr12:33905458-33905558 + 80 3.46e-04 GGGAGAAAAC TTGGCGGGGCC TCAAGCCCCA
chr3:151777796-151777896 + 61 3.70e-04 CTGGGCATGA AGGGCGTTCCC TTGGGCCAAG
chr10:128184604-128184704 + 65 3.70e-04 TCCGAAGTGT GGGGCGCGGCT AATTAGAATA
chr19:24348713-24348813 - 41 3.97e-04 TCTTCATACC TGGGCGTTTCC CAGTTTGGTG
chr9:66351711-66351811 + 31 4.20e-04 TCTGTTCTGA GGCGTGTGGTT TGCTTTATCA
chr7:38963792-38963892 + 81 4.41e-04 CTAAAATTCA TGAGTGGGGTT TGAAGTGGG
chr11:104890315-104890415 - 3 4.73e-04 ACAGCCAGAG AGTGTGTGGGC GG
chr4:126645609-126645709 + 34 6.36e-04 TGTCAAGTAA AGGGCGTCGAC TCTCAAGGAA
chr17:87913078-87913178 + 20 6.76e-04 AATTCTAAAC TGCGTGTGCTT GGCGTCTCTC
chr16:32509880-32509980 + 4 8.26e-04 GCA TGGGTATGGGT CCTTGCTAGT
chr12:35474090-35474190 - 53 8.26e-04 CATACATGTT CGGGCGTGTCA TGGTGGTATC
chr1:156887119-156887219 - 41 8.26e-04 GATAGTCAGT TGGGCGTCTCT AGCATGTCAG
chr11:95195044-95195144 - 8 9.89e-04 TCCCCTAGCA CGGGCGTGATA GCAGGAT
chr1:122244437-122244537 - 21 1.22e-02 XXXXXXXXXX XXXXTGTGGTT TGTCTTTTGA
chr11:51213801-51213901 - 17 1.33e-02 XXXXXXXXXX XXXXTGTGGCG GAGGATGATT

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr1:169314208-169314308 4.28e-06
+
-
chr10:60612190-60612290 3.00e-06
+
-
chr4:111175599-111175699 1.73e-04
+
-
chr7:16987195-16987295 7.05e-05
+
-
chr6:136416751-136416851 2.86e-04
+
-
chr11:77795184-77795284 1.14e-04
+
-
chr1:136638482-136638582 6.43e-07
+
-
chr10:128184604-128184704 3.70e-04
+
-
chr18:32702023-32702123 1.14e-04
+
-
chr6:142838756-142838856 6.17e-06
+
-
chr11:51213801-51213901 1.33e-02
+
-
chr17:26651347-26651447 1.35e-04
+
-
chr5:45951565-45951665 6.43e-07
+
-
chr1:183078715-183078815 1.58e-05
+
-
chr3:103708585-103708685 1.89e-04
+
-
chr13:100518008-100518108 6.05e-05
+
-
chr11:105013714-105013814 1.27e-04
+
-
chr9:108243080-108243180 3.00e-06
+
-
chr8:97257705-97257805 1.41e-05
+
-
chr12:114390660-114390760 1.58e-05
+
-
chr4:118863136-118863236 4.09e-05
+
-
chr16:76323702-76323802 1.77e-05
+
-
chr7:111009340-111009440 3.17e-04
+
-
chr9:66763906-66764006 7.05e-05
+
-
chr6:34107097-34107197 1.58e-05
+
-
chr18:57137388-57137488 1.73e-04
+
-
chr10:93128960-93129060 1.95e-05
+
-
chr11:32168937-32169037 3.15e-05
+
-
chr1:122244437-122244537 1.22e-02
+
-
chr1:36976473-36976573 3.66e-05
+
-
chr14:21299130-21299230 2.57e-05
+
-
chr11:90524332-90524432 3.85e-06
+
-
chr10:41632091-41632191 1.94e-06
+
-
chr12:41693216-41693316 1.35e-04
+
-
chr1:133343883-133343983 6.43e-07
+
-
chr1:88208803-88208903 8.91e-05
+
-
chr7:103853792-103853892 8.93e-06
+
-
chr11:69793285-69793385 5.27e-05
+
-
chr12:3795439-3795539 8.64e-07
+
-
chr17:43466518-43466618 2.11e-07
+
-
chr7:148956813-148956913 7.78e-05
+
-
chr6:34857296-34857396 7.46e-06
+
-
chr15:83253024-83253124 1.14e-04
+
-
chr8:87494750-87494850 1.77e-05
+
-
chr5:123643388-123643488 3.00e-06
+
-
chr12:70394726-70394826 8.93e-06
+
-
chr11:68709695-68709795 1.02e-05
+
-
chr2:24832341-24832441 7.46e-06
+
-
chr7:148318028-148318128 1.14e-04
+
-
chr12:80012617-80012717 3.85e-06
+
-
chr2:25742741-25742841 3.85e-06
+
-
chr16:49777000-49777100 8.93e-06
+
-
chr4:118241267-118241367 1.94e-06
+
-
chr16:32508975-32509075 4.09e-05
+
-
chr2:167454295-167454395 4.90e-06
+
-
chr3:79383670-79383770 1.02e-05
+
-
chr5:89056517-89056617 3.85e-06
+
-
chr17:47754580-47754680 4.33e-05
+
-
chr9:107198663-107198763 1.73e-04
+
-
chr7:25993969-25994069 3.00e-06
+
-
chr9:66351711-66351811 4.20e-04
+
-
chr11:95195044-95195144 9.89e-04
+
-
chr3:60623496-60623596 1.41e-05
+
-
chr13:73612725-73612825 3.15e-05
+
-
chr5:37112216-37112316 1.04e-04
+
-
chr1:169322898-169322998 9.76e-06
+
-
chr1:9738234-9738334 2.23e-04
+
-
chr1:135696219-135696319 3.17e-04
+
-
chr9:107206718-107206818 1.94e-06
+
-
chr10:93585404-93585504 2.08e-04
+
-
chr7:128850883-128850983 7.46e-06
+
-
chr7:111007530-111007630 4.90e-06
+
-
chr5:34915767-34915867 5.27e-05
+
-
chr2:28462972-28463072 6.17e-06
+
-
chr3:89612431-89612531 3.00e-06
+
-
chr3:60589030-60589130 1.27e-04
+
-
chr9:21069279-21069379 1.27e-04
+
-
chr15:81700367-81700467 1.09e-06
+
-
chr7:139915433-139915533 8.93e-06
+
-
chr5:118933401-118933501 4.09e-05
+
-
chr11:117187372-117187472 4.90e-06
+
-
chr19:53259937-53260037 2.11e-07
+
-
chr7:139969684-139969784 2.11e-07
+
-
chr19:45865027-45865127 1.77e-05
+
-
chr16:91352914-91353014 8.64e-07
+
-
chr15:78243390-78243490 1.41e-05
+
-
chr9:44096486-44096586 3.00e-06
+
-
chr11:104890315-104890415 4.73e-04
+
-
chr18:13094467-13094567 1.77e-05
+
-
chr15:73181612-73181712 1.27e-04
+
-
chr9:70774508-70774608 3.15e-05
+
-
chr3:88305500-88305600 2.57e-05
+
-
chr9:42909938-42910038 1.27e-04
+
-
chr15:76083900-76084000 6.43e-07
+
-
chr2:93306457-93306557 7.46e-06
+
-
chr14:70865967-70866067 4.09e-05
+
-
chr1:134979850-134979950 3.00e-06
+
-
chr4:124283413-124283513 6.43e-07
+
-
chr18:80416880-80416980 1.95e-05
+
-
chr11:115373883-115373983 2.01e-05
+
-
chr1:88057041-88057141 2.08e-04
+
-
chr15:98860006-98860106 1.04e-04
+
-
chr1:157123773-157123873 8.26e-05
+
-
chr18:61379741-61379841 6.43e-07
+
-
chr13:56459266-56459366 3.66e-05
+
-
chr9:114375902-114376002 6.05e-05
+
-
chr17:48438407-48438507 4.76e-05
+
-
chr17:29067183-29067283 1.77e-05
+
-
chr17:24289205-24289305 1.17e-05
+
-
chr1:156887119-156887219 8.26e-04
+
-
chr13:3866266-3866366 8.64e-07
+
-
chr10:59336305-59336405 1.04e-04
+
-
chr5:139672808-139672908 3.85e-06
+
-
chr16:14166506-14166606 1.17e-05
+
-
chr5:144322338-144322438 1.35e-04
+
-
chr16:34319203-34319303 1.89e-04
+
-
chr4:44016940-44017040 1.58e-05
+
-
chr4:128287322-128287422 7.05e-05
+
-
chr11:121295413-121295513 5.27e-05
+
-
chr7:149565910-149566010 1.27e-04
+
-
chr19:10736425-10736525 1.94e-06
+
-
chr10:40924608-40924708 3.15e-05
+
-
chr4:118862381-118862481 8.26e-05
+
-
chr1:77295122-77295222 1.41e-05
+
-
chr2:164599351-164599451 5.27e-05
+
-
chr12:33905458-33905558 3.46e-04
+
-
chr14:63796627-63796727 1.94e-06
+
-
chr19:5963828-5963928 3.17e-04
+
-
chr4:134960762-134960862 4.76e-05
+
-
chr17:87913078-87913178 6.76e-04
+
-
chr6:81915769-81915869 4.90e-06
+
-
chr5:115468250-115468350 1.58e-05
+
-
chr12:112796794-112796894 1.41e-05
+
-
chr4:128532893-128532993 8.64e-07
+
-
chr15:56455064-56455164 1.57e-04
+
-
chr7:105490727-105490827 1.94e-06
+
-
chr6:86027772-86027872 6.43e-07
+
-
chr7:38963792-38963892 4.41e-04
+
-
chr16:32449731-32449831 3.46e-04
+
-
chr9:120025371-120025471 7.46e-06
+
-
chr4:132847121-132847221 1.58e-05
+
-
chr11:44322389-44322489 2.57e-05
+
-
chr9:24715045-24715145 4.09e-05
+
-
chr7:28233711-28233811 8.64e-07
+
-
chr4:153535135-153535235 4.90e-06
+
-
chr13:74873194-74873294 1.95e-05
+
-
chr10:57527585-57527685 2.11e-07
+
-
chr3:51492458-51492558 6.43e-07
+
-
chr9:108709857-108709957 2.57e-05
+
-
chr13:112863645-112863745 1.09e-06
+
-
chr16:34031622-34031722 1.27e-04
+
-
chr9:21362671-21362771 4.76e-05
+
-
chr17:25039619-25039719 1.94e-06
+
-
chr5:28369135-28369235 3.15e-05
+
-
chr11:115367840-115367940 7.46e-06
+
-
chr12:77866195-77866295 2.49e-04
+
-
chr16:6504644-6504744 2.11e-07
+
-
chr19:6300361-6300461 6.17e-06
+
-
chr14:41760574-41760674 3.85e-06
+
-
chr7:148354574-148354674 1.41e-05
+
-
chr7:135432389-135432489 9.72e-05
+
-
chr3:96232776-96232876 2.36e-04
+
-
chr11:104842983-104843083 1.17e-05
+
-
chr15:91082416-91082516 8.93e-06
+
-
chr7:128112657-128112757 1.77e-05
+
-
chr11:94858859-94858959 3.66e-05
+
-
chr15:83139085-83139185 8.93e-06
+
-
chr11:53839888-53839988 1.41e-05
+
-
chr5:65255865-65255965 6.43e-07
+
-
chr19:44460305-44460405 1.58e-05
+
-
chr3:145253492-145253592 8.93e-06
+
-
chr5:37127175-37127275 1.27e-04
+
-
chr5:89197189-89197289 1.95e-05
+
-
chr16:8829691-8829791 1.14e-04
+
-
chr9:21940049-21940149 6.43e-07
+
-
chr4:151334552-151334652 2.57e-05
+
-
chr15:36250679-36250779 2.08e-04
+
-
chr5:30289969-30290069 7.46e-06
+
-
chr9:98389943-98390043 1.58e-05
+
-
chr9:113850421-113850521 1.09e-06
+
-
chr7:99891353-99891453 1.41e-05
+
-
chr12:35474090-35474190 8.26e-04
+
-
chr17:45884716-45884816 7.46e-06
+
-
chr6:57653289-57653389 3.66e-05
+
-
chr5:144685597-144685697 1.73e-04
+
-
chr5:27985060-27985160 6.43e-07
+
-
chr5:139858102-139858202 6.43e-07
+
-
chr19:24609087-24609187 1.43e-04
+
-
chr4:111173963-111174063 6.17e-06
+
-
chr1:137838164-137838264 6.43e-07
+
-
chr8:108344711-108344811 4.28e-06
+
-
chr11:115374474-115374574 7.46e-06
+
-
chr1:173210952-173211052 1.94e-06
+
-
chr16:38371687-38371787 3.46e-04
+
-
chr6:83115546-83115646 2.36e-04
+
-
chr17:47735006-47735106 1.77e-05
+
-
chr7:91033422-91033522 1.27e-04
+
-
chr6:135115628-135115728 4.33e-05
+
-
chr15:80591373-80591473 3.17e-04
+
-
chr4:43977111-43977211 1.09e-06
+
-
chr3:153454530-153454630 7.05e-05
+
-
chr5:108943418-108943518 8.93e-06
+
-
chr10:107550274-107550374 3.85e-06
+
-
chr3:84162553-84162653 6.17e-06
+
-
chr4:135730666-135730766 2.11e-07
+
-
chr10:111261811-111261911 1.94e-06
+
-
chr1:135693776-135693876 9.76e-06
+
-
chr11:69759803-69759903 4.09e-05
+
-
chr11:102236405-102236505 7.05e-05
+
-
chr13:3862103-3862203 1.94e-06
+
-
chr15:95715580-95715680 8.93e-06
+
-
chr16:32509880-32509980 8.26e-04
+
-
chr19:55940204-55940304 4.09e-05
+
-
chr14:56154883-56154983 1.41e-05
+
-
chr14:69939827-69939927 2.36e-04
+
-
chr4:126645609-126645709 6.36e-04
+
-
chr7:139930395-139930495 1.57e-04
+
-
chr7:19832207-19832307 2.11e-07
+
-
chr4:41334759-41334859 8.26e-05
+
-
chr1:155596606-155596706 8.93e-06
+
-
chr10:126642277-126642377 1.95e-05
+
-
chrX:146984104-146984204 7.05e-05
+
-
chr17:12378670-12378770 1.43e-04
+
-
chr2:31940725-31940825 1.58e-05
+
-
chr11:101309433-101309533 3.85e-06
+
-
chr18:32719457-32719557 3.46e-04
+
-
chr11:86427476-86427576 3.00e-06
+
-
chr5:77087237-77087337 1.77e-05
+
-
chr19:6236070-6236170 1.41e-05
+
-
chr3:19550495-19550595 3.17e-04
+
-
chr9:70682447-70682547 1.95e-05
+
-
chr11:94195590-94195690 4.76e-05
+
-
chr5:64826642-64826742 3.85e-06
+
-
chr12:102194283-102194383 6.17e-06
+
-
chr18:62325792-62325892 8.91e-05
+
-
chr9:57618594-57618694 1.89e-04
+
-
chr5:104483856-104483956 1.57e-04
+
-
chr15:82060183-82060283 3.85e-06
+
-
chr7:56247542-56247642 1.73e-04
+
-
chr2:156710230-156710330 6.43e-07
+
-
chr5:118929927-118930027 6.05e-05
+
-
chr13:112833730-112833830 8.64e-07
+
-
chr1:92185726-92185826 8.91e-05
+
-
chr4:128724869-128724969 6.43e-07
+
-
chr4:32996229-32996329 1.89e-04
+
-
chr8:85946912-85947012 3.66e-05
+
-
chr17:85277579-85277679 2.11e-07
+
-
chr14:55043398-55043498 1.77e-05
+
-
chr12:112505815-112505915 3.15e-05
+
-
chr17:33229103-33229203 1.95e-05
+
-
chr4:44084689-44084789 1.77e-05
+
-
chr4:62177553-62177653 3.66e-05
+
-
chr19:24348713-24348813 3.97e-04
+
-
chr17:25716184-25716284 3.46e-04
+
-
chr11:30901439-30901539 1.95e-05
+
-
chr6:72324694-72324794 1.94e-06
+
-
chr8:24164440-24164540 4.09e-05
+
-
chr3:151777796-151777896 3.70e-04
+
-
chr11:96817330-96817430 3.00e-06
+
-
chr12:82044358-82044458 9.72e-05
+
-
chr7:149571622-149571722 1.41e-05
+
-
chr15:58828420-58828520 6.43e-07
+
-
chr17:84179515-84179615 2.11e-07
+
-
chr6:83345790-83345890 3.15e-05
+
-
chr4:9588078-9588178 4.33e-05
+
-
chr2:112350167-112350267 3.15e-05
+
-
chr18:85054319-85054419 3.00e-06
+
-
chr2:131039492-131039592 2.57e-05
+
-
chr5:73746598-73746698 7.05e-05
+
-
chr5:65203207-65203307 1.02e-05
+
-
chr11:50038238-50038338 5.27e-05
+
-
chr11:84636993-84637093 7.05e-05
+
-
chr14:79702844-79702944 8.64e-07
+
-
chr4:129140945-129141045 1.95e-05
+
-
chr4:129974285-129974385 3.46e-04
+
-
chr16:44265654-44265754 1.95e-05
+
-
chr2:152650541-152650641 1.14e-04
+
-
chr16:8686809-8686909 1.95e-05
+
-
chr11:69186641-69186741 1.94e-06
+
-
chr8:107823858-107823958 9.76e-06
+
-
chr8:109927244-109927344 9.76e-06
+
-
chr5:96888622-96888722 1.17e-05
+
-
chr13:107890789-107890889 1.89e-04
+
-
chr3:88167296-88167396 7.05e-05
+
-
chr17:26079525-26079625 1.94e-06
+
-
 
0
20
40
60
80
100

Time 302.2 secs.

Motif 2

Previous Next Top

Summary

Sequence Logo

E-value 3.2e-026
Width 8
Sites 176
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[CT]TTATC[TA][GCT]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr5:65203207-65203307 + 58 1.60e-05 TGGGCAGAAT CTTATCTG AAGCTATGTC
chr19:55940204-55940304 - 86 1.60e-05 AGCCCCT CTTATCTG CAGGCAGTTA
chr16:32509880-32509980 + 68 1.60e-05 CCTAAGAGAC CTTATCTG GGGATTGTGT
chr7:104332488-104332588 + 15 1.60e-05 TTGTCTTTGG CTTATCTG CTGCCACTCC
chr1:173210952-173211052 - 7 1.60e-05 GGGCGTGGCC CTTATCTG CACACG
chr11:94858859-94858959 + 28 1.60e-05 GCCACACACC CTTATCTG TATGCACAAT
chr1:77295122-77295222 + 41 1.60e-05 TCTGTTCAGC CTTATCTG TTGAGGAACA
chr19:24354047-24354147 + 12 1.60e-05 AGAACCGAGA CTTATCTG AANNNNNNNN
chr2:37405047-37405147 - 49 1.60e-05 TGATAACTTA CTTATCTG TGAAATACTA
chr9:114375902-114376002 - 16 1.60e-05 GAAGGGGTGA CTTATCTG TGTTCATGGA
chr7:111007530-111007630 - 46 1.60e-05 AGCTCTGGCT CTTATCTG TCACCACAGT
chr3:60623496-60623596 - 59 1.60e-05 AAAAACAGCT CTTATCTG CCAGCACGTG
chr11:69186641-69186741 + 78 3.19e-05 GGGTGTGGTT CTTATCTC CTCTCTCCCA
chr4:9588078-9588178 + 19 3.19e-05 AGAATACGTC CTTATCTC CTTTGTGAAA
chr17:24339802-24339902 + 90 3.19e-05 CTGGCAGCTG CTTATCTC ATG
chr9:121335573-121335673 + 12 3.19e-05 CTACTAAGTC CTTATCTC ACAGTGTCAC
chr5:105994747-105994847 - 80 3.19e-05 ATCCTGAAGA CTTATCTC CCTCAACAGA
chr6:38860751-38860851 + 61 3.19e-05 CGAGTCTAGC CTTATCTC TCATTAGCTT
chr10:127624310-127624410 + 92 3.19e-05 NNNNNNNACT CTTATCTC T
chr18:80416880-80416980 + 58 3.19e-05 ACACACCCAC CTTATCTC CTCTGAGTGC
chr9:44096486-44096586 + 32 3.19e-05 CCCCTCATTG CTTATCTC TTGCAGTTCA
chr19:53259937-53260037 + 39 3.19e-05 ATTCGATCTT CTTATCTC CTGCCACCAC
chr5:89056517-89056617 - 80 3.19e-05 TGGAGCATTT CTTATCTC CCAGGTTCAG
chr4:118241267-118241367 - 69 3.19e-05 AGGTCGTACC CTTATCTC TTGGTCCAGA
chr2:103324308-103324408 + 1 3.19e-05 CTTATCTC ACAGGAATAT
chr11:90524332-90524432 - 57 3.19e-05 GGTGCAAAGT CTTATCTC GTTGCCTCTA
chr4:8631655-8631755 - 77 3.19e-05 GCCACAATAA CTTATCTC TTCTTCCCTA
chr13:76003199-76003299 + 50 3.19e-05 GTTGACTCAT CTTATCTC TCCTTAGCAG
chr10:60612190-60612290 + 42 3.19e-05 CAATGGCATT CTTATCTC CACCTAGTGT
chr13:96735033-96735133 - 57 4.79e-05 TTTCCTTTTT CTTATCAG CGACACACAT
chr5:38900630-38900730 + 87 4.79e-05 ATCTCATACA CTTATCAG TCCACA
chr7:56247542-56247642 + 26 4.79e-05 TGTGAGGCAC CTTATCAG TTCCCTAGCA
chr7:19832207-19832307 + 18 4.79e-05 GTTCTGCCCT CTTATCAG AAAAGCCCCA
chr4:111173963-111174063 + 49 4.79e-05 AGACACCATG CTTATCAG AGGAGCATGC
chr5:27985060-27985160 + 36 4.79e-05 TCAGACATTT CTTATCAG AGGTCACAGG
chr5:140280105-140280205 + 32 4.79e-05 TAGAGCCTAT CTTATCAG CCCAGAGGGC
chr15:91082416-91082516 + 86 4.79e-05 GCCATAGTCT CTTATCAG GCTTTAT
chr11:115367840-115367940 - 56 4.79e-05 ACGTGCCTGC CTTATCAG TGCTTCAGTG
chr17:87913078-87913178 - 69 4.79e-05 GACGGCTTTC CTTATCAG GCTTTGATGA
chr11:96809237-96809337 + 25 4.79e-05 AAGGCCAGAC CTTATCAG TGTCCTCCCT
chr18:61379741-61379841 + 36 4.79e-05 CCTCTTGGCC CTTATCAG ACCAGGGTGA
chr2:180447046-180447146 + 90 4.79e-05 CTTGTGCCAT CTTATCAG TTT
chr14:69922788-69922888 - 78 4.79e-05 TCCCTCCCTG CTTATCAG GATGCACCTG
chr18:32702023-32702123 + 62 4.79e-05 CTGTTTCAGG CTTATCAG AGGCAGACCT
chr2:103797834-103797934 - 61 8.14e-05 CCGGGGAATC CTTATCTT CAGTTGGAGA
chr13:112446982-112447082 - 79 8.14e-05 ATTTATCTTT CTTATCTT TCTAGGAAGT
chr5:121049618-121049718 - 24 8.14e-05 CCCTGGCAAG CTTATCTT TTGGCTTCGT
chr11:87563495-87563595 + 87 8.14e-05 CTTCCCTCAC CTTATCTT GTATTT
chr7:28266696-28266796 - 92 8.14e-05 A CTTATCTT XXXXXXXXXX
chr8:126512500-126512600 + 46 8.14e-05 GCCAGCTTTT CTTATCTT TCTCCCTTAG
chr8:122895509-122895609 - 80 8.14e-05 GGCCTCAGGG TTTATCTG GAGACAGCAG
chr9:98389943-98390043 + 50 8.14e-05 AATAGCCCTT CTTATCTT CAGCCCCACC
chr5:28369135-28369235 + 31 8.14e-05 CAACTAAAGC CTTATCTT GCTCTGTACC
chr10:57527585-57527685 - 68 8.14e-05 CCTTACCGTT TTTATCTG AAAGGACCAT
chr13:74873194-74873294 - 61 8.14e-05 GCAGTTTATT TTTATCTG TAGAACTGAG
chr7:28233711-28233811 - 33 8.14e-05 GGTGTGGCTC TTTATCTG GAACTTTCAC
chr6:86027772-86027872 + 7 8.14e-05 CCTGCC TTTATCTG AACATGGCAG
chr15:56455064-56455164 + 22 8.14e-05 GCTTATTTAT TTTATCTG TGACTGCAAC
chr11:97307230-97307330 + 75 8.14e-05 TGTCAGGCTG CTTATCTT TGTCCGCCTG
chr11:58166514-58166614 + 22 8.14e-05 ATCACCCTTG CTTATCTT AACCTGGCTT
chr4:124283413-124283513 + 43 8.14e-05 GGAAGCCTGC TTTATCTG TCAAGCCACA
chr9:42909938-42910038 + 32 8.14e-05 TAAAACCCTT CTTATCTT GTTCAGCCAT
chr4:111203044-111203144 - 93 8.14e-05 CTTATCTX XXXXXXXXXX
chr16:91352914-91353014 + 37 8.14e-05 TGAAAACAGC CTTATCTT TGCCAGCCAT
chr8:87494750-87494850 + 37 8.14e-05 AAGAGGATGC TTTATCTG GAGCCATTCT
chr5:140488129-140488229 + 58 8.14e-05 NNNNNNATTC TTTATCTG AAAGAGACCT
chr7:138568415-138568515 - 52 8.14e-05 CTGCCTACAC CTTATCTT TCTACACCAG
chr12:70884547-70884647 + 38 8.14e-05 CACCCATTGT CTTATCTT TGATCTCCAG
chr6:38874026-38874126 - 87 8.14e-05 CAGTGG CTTATCTT AAATATGTCC
chr1:183078715-183078815 + 28 8.14e-05 TTGAGCACTC TTTATCTG TGGAGCTTTT
chr5:45951565-45951665 + 26 8.14e-05 AGGAAAAAGG TTTATCTG GACATTTACT
chr17:26651347-26651447 + 61 8.14e-05 GACCTTTGTC CTTATCTT CTGGGACACA
chr16:8686809-8686909 + 72 9.74e-05 CTGTGACAGC CTTATCAC TGGAGTGGAC
chr14:71023666-71023766 - 57 9.74e-05 GTGGGCAAGT CTTATCAC CCATATCCTG
chr3:104477495-104477595 + 69 9.74e-05 ATATTGACCT CTTATCAC ACTTGTGCAG
chrX:146984104-146984204 - 75 9.74e-05 GCCCCTAGAG CTTATCAC CATTAGAGTC
chr7:139930395-139930495 + 73 9.74e-05 ACAAAGATAC CTTATCAC ACCACACAGA
chr13:94151186-94151286 + 38 9.74e-05 CTACCCATTT CTTATCAC CATCCCTGCA
chr4:46419779-46419879 - 75 9.74e-05 GCTCTTGGCA CTTATCAC ATCAGAGACA
chr3:100351340-100351440 + 45 9.74e-05 ACCACGGGTC CTTATCAC TGCCTCAGGC
chr15:36250679-36250779 + 15 9.74e-05 GGTTAATTCT CTTATCAC ACAGCAGAAG
chr7:106742881-106742981 - 11 9.74e-05 GAAGATGACT CTTATCAC AGCCAGCCCT
chr5:97380648-97380748 - 24 9.74e-05 AAGTGTGTGC CTTATCAC CCCCTCCCGC
chr5:144579744-144579844 - 71 9.74e-05 TGCAGACACT CTTATCAC GGCGTCACAG
chr11:68709695-68709795 - 78 9.74e-05 TTGTAGTCTG CTTATCAC TTATCAACAG
chr11:84636993-84637093 - 69 1.30e-04 TGATGAAAAC TTTATCTC TGCTGGCCTC
chr4:118723531-118723631 + 47 1.30e-04 TCTGTGCTGG GTTATCTG TTAATGACAG
chr19:55358481-55358581 + 1 1.30e-04 GTTATCTG CCTTGCCACT
chr17:47735006-47735106 + 23 1.30e-04 TCTCTGGCCT TTTATCTC TGGCTCCAGT
chr5:37127175-37127275 + 22 1.30e-04 CAGAGACTCC GTTATCTG TAGTAGCAGA
chr15:66969077-66969177 + 46 1.30e-04 CTCCCAGGTC TTTATCTC TAAGTTCTGG
chr4:44262429-44262529 - 21 1.30e-04 CCTTTACTGA GTTATCTG TCAGGCATTT
chr6:124614276-124614376 - 16 1.30e-04 XXXXXXXXAA TTTATCTC AAACTTCCTA
chr13:112837038-112837138 - 25 1.30e-04 CCGTTGTCCC TTTATCTC CTGCCTACAA
chr11:57767826-57767926 + 74 1.30e-04 TCCGCCTCCT GTTATCTG TGGAACCTTG
chr17:28946040-28946140 + 40 1.30e-04 TTTCTTAGGT TTTATCTC GATTAGCTAC
chr17:84135992-84136092 + 42 1.30e-04 TCCTTCTCCC TTTATCTC TGAGCACCAC
chr13:100518008-100518108 - 44 1.30e-04 TCCGCTCCTG TTTATCTC ACACCTCTTT
chr4:129974285-129974385 + 57 1.64e-04 TCCCTCTCAC TTTATCAG ACAAACAGGG
chr15:58828420-58828520 + 27 1.64e-04 GCACAGCCAT TTTATCAG CTCAGTCACA
chr15:82060183-82060283 + 24 1.64e-04 CCCCACCCTG TTTATCAG TGTCCAGTTC
chr5:104483856-104483956 + 13 1.64e-04 GTCACTCAGT TTTATCAG CAGTAAAATA
chr7:25940386-25940486 - 46 1.64e-04 AAAGCTCACC TTTATCAG GCTAGGATCC
chr12:35474090-35474190 - 81 1.64e-04 ACAAGTGGTT TTTATCAG TTATAAACAT
chr17:29575284-29575384 + 91 1.64e-04 GACGATTGCT TTTATCAG TA
chr9:21940049-21940149 + 31 1.64e-04 AGTGTCCAGG CTTATCAT CTTGCCTTAG
chr11:44322389-44322489 - 62 1.64e-04 TAACAAGCAA CTTATCAT GGTCTCTCCC
chr2:120881648-120881748 - 5 1.64e-04 CATGGCTCGA TTTATCAG TCAG
chr4:118862381-118862481 - 81 1.64e-04 GAACGCTCGC TTTATCAG GGGTGGGCAG
chr15:96173312-96173412 + 16 1.64e-04 GTCGATAAGT CTTATCAT AGTGAGTTTA
chr5:34915767-34915867 + 13 1.64e-04 TCTGTGGAGC TTTATCAG AGCACACACA
chr9:66351711-66351811 + 45 1.64e-04 TGTGGTTTGC TTTATCAG GGGTGGTTTT
chr6:34857296-34857396 + 31 1.64e-04 CACACCCAAA TTTATCAG TCCCTCACCA
chr5:68206919-68207019 - 37 1.64e-04 CATTAGTATC TTTATCAG TGGGTGGAGA
chr9:108243080-108243180 + 74 1.64e-04 GGAGCTGTTT CTTATCAT AACCTCCCAG
chr13:104819583-104819683 - 8 1.80e-04 XXATTGCCTG CTTATCTA TTTCTTA
chr14:32981988-32982088 + 46 1.80e-04 CCCAGAGTTG CTTATCTA GGCCAAACAG
chr2:132521381-132521481 - 53 1.80e-04 GAGTCTTCAC CTTATCTA CCAGGGCAGG
chr19:44460305-44460405 - 81 1.80e-04 TCTTTAGCAT CTTATCTA TGGGGACTTT
chr16:34031622-34031722 - 57 1.80e-04 GCCAGGCTCC CTTATCTA AAAACCCCAC
chr9:65063485-65063585 - 74 1.80e-04 GGGACAACTT CTTATCTA GGCAGAACAG
chr13:73612725-73612825 + 75 1.80e-04 TTCTTCTGAG CTTATCTA GAACTCAAGA
chr3:79383670-79383770 - 20 1.80e-04 GTAGATTTCA CTTATCTA AAGTTCTTGT
chr7:148956813-148956913 - 58 1.80e-04 AGCTAAGCAG CTTATCTA CCACAACGCA
chr7:128005139-128005239 + 38 2.14e-04 CAGGTTCCAC TTTATCTT GCGTCCCATC
chr11:50038238-50038338 - 53 2.14e-04 CCGAGCTGAG GTTATCTC TAGCTAGCAG
chr10:25018820-25018920 + 90 2.14e-04 GGGCTTCAAC TTTATCTT NNN
chr6:41654153-41654253 + 22 2.14e-04 CACCTCCTCT TTTATCTT AGTTTCTCAG
chr3:145253492-145253592 - 50 2.14e-04 GTGGTGGCAG TTTATCTT TCCCCAAATA
chr19:11699767-11699867 - 52 2.14e-04 TGCTAGCTCT GTTATCTC TTCTGTCCAG
chr3:96232776-96232876 + 39 2.14e-04 GGGATGAGAG TTTATCTT TGACGTTCCT
chr5:123643388-123643488 + 54 2.14e-04 GGGCTGCTTT TTTATCTT TTGCGGTATA
chr16:92715758-92715858 - 79 2.14e-04 CAGTGAAGCT GTTATCTC CAGGGCGAGC
chr10:112467642-112467742 + 1 2.14e-04 TTTATCTT GGGGGAAACT
chr4:62177553-62177653 + 53 2.47e-04 TGGGGTTGAG GTTATCAG GAACCACACA
chr3:102933244-102933344 + 65 2.47e-04 GTGGTACTAT GTTATCAG GAGCTCCTNN
chr4:41334759-41334859 - 70 2.47e-04 TCCCTCCCCA GTTATCAG GCCCAGACTG
chr5:139858102-139858202 + 69 2.47e-04 AAAAGCTGAG GTTATCAG GAGCCCAGAT
chr7:135432389-135432489 - 83 2.47e-04 CTTCCCTGCT GTTATCAG AGAGCTGCAG
chr11:32193434-32193534 + 12 2.47e-04 ACCCTTTTGT GTTATCAG TAGGAAGAGT
chr2:84652033-84652133 + 36 2.47e-04 GTTACTCCTC TTTATCAC TAACAAGNNN
chr3:116562121-116562221 - 85 2.47e-04 TACACCCT GTTATCAG TTGCCACAAA
chr1:157123773-157123873 + 6 2.47e-04 AACTC GTTATCAG TTTTGAAAGT
chr10:20961510-20961610 - 57 2.47e-04 ACCACAAAAT GTTATCAG GGCGGTTCCC
chr1:136638482-136638582 + 51 2.47e-04 CCACACCTAT GTTATCAG GTCATCCACC
chr2:152650541-152650641 - 61 2.80e-04 TTGCTCACTG GTTATCTT AGCCCAGTGC
chr18:85054319-85054419 + 82 2.80e-04 CATGACTTCT GTTATCTT TGCTCTGCCA
chr12:82044358-82044458 + 18 2.80e-04 AGTAAGCTTT CTTATCAA CTCCTAACAC
chr19:24348713-24348813 - 58 2.80e-04 CTTCTCTCCT GTTATCTT CATACCTGGG
chr9:21362671-21362771 + 19 2.80e-04 CTTATGCCTG GTTATCTT CTATGTACAG
chr8:24254796-24254896 + 44 2.80e-04 ATATGTGTTA CTTATCAA TTTAAAAAAT
chr4:128532893-128532993 - 50 2.80e-04 CTTTCAGAAT CTTATCAA TTCTAAAGGA
chr3:51034101-51034201 + 20 2.80e-04 AGATGTCCTG GTTATCTT TGGNNNNNNN
chr9:90156773-90156873 + 47 2.80e-04 CCAGGAGACA GTTATCTT GGAAGAGGAA
chr11:69793285-69793385 - 32 2.80e-04 CCTGAAGGCT CTTATCAA GAAATCTGCA
chr10:41632091-41632191 + 70 2.80e-04 ATTCACTGCA GTTATCTT TACTCCTCAG
chr9:66763906-66764006 + 38 2.80e-04 GGGCGTGGTG CTTATCAA ATTTGTCAGC
chr8:73367286-73367386 - 44 2.80e-04 GCATGGGCGG CTTATCAA GAGCAGCCTA
chr16:44265654-44265754 - 32 3.14e-04 GATGCAGCTT GTTATCAC CTACCAGACA
chr11:80597918-80598018 + 67 3.14e-04 NNNNNNNNNN NTTATCTC TGGTTTCTGA
chr4:43977111-43977211 - 47 3.14e-04 TAGGAGGCAA GTTATCAC TGGCGACCAC
chr4:151334552-151334652 + 30 3.14e-04 CCATAGGCTA GTTATCAC CAGCCTCAAG
chr14:70865967-70866067 + 29 3.14e-04 CGTTACTGTC TTTATCAT TACTGGCAGC
chr9:107206718-107206818 - 13 3.14e-04 CACACCCAAA GTTATCAC CCTTGCCTCC
chr15:83253024-83253124 + 10 3.14e-04 GGCCCCAGG GTTATCAC TGTGTACAGG
chr19:5845899-5845999 - 35 3.14e-04 AAAGTCTTGC TTTATCAT AGCTTGCAAC
chr11:94195590-94195690 + 48 3.31e-04 AGCTTTCCCT TTTATCTA CACCCCTGCA
chr2:31940725-31940825 - 16 3.31e-04 CAAACTATCC TTTATCTA GAAGCTAATG
chr4:117601166-117601266 + 10 3.31e-04 TCCCAGGCC TTTATCTA GTTCCTCCAG
chr2:24832341-24832441 - 16 3.31e-04 CGGAGTTTAC TTTATCTA AGGAAAGGCA
chr9:57618594-57618694 - 83 3.65e-04 CTGCTCCACT GTTATCTA TTACTACAGA
chr15:81700367-81700467 - 75 3.65e-04 TGTTCAGCTA GTTATCTA GGTAATTTCT
chr18:57137388-57137488 + 8 4.14e-04 ATGATGC CTTATCGG TGCTTCCAGA
chr4:135179215-135179315 - 69 5.12e-04 GTCCCCGACT CTTATCGT AACTTTCCAG
chr11:74652047-74652147 - 26 5.77e-04 AGTCAGTAAA ATTATCAC GGAAATAAGC
chr12:77577208-77577308 - 37 7.27e-04 XXXXXXXXXX XXTATCTG TGTTTTTGCT

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr8:73367286-73367386 2.80e-04
+
-
chr10:60612190-60612290 3.19e-05
+
-
chr13:76003199-76003299 3.19e-05
+
-
chr10:112467642-112467742 2.14e-04
+
-
chr4:8631655-8631755 3.19e-05
+
-
chr1:136638482-136638582 2.47e-04
+
-
chr18:32702023-32702123 4.79e-05
+
-
chr17:26651347-26651447 8.14e-05
+
-
chr5:45951565-45951665 8.14e-05
+
-
chr19:5845899-5845999 3.14e-04
+
-
chr1:183078715-183078815 8.14e-05
+
-
chr16:92715758-92715858 2.14e-04
+
-
chr13:100518008-100518108 1.30e-04
+
-
chr6:38874026-38874126 8.14e-05
+
-
chr9:108243080-108243180 1.64e-04
+
-
chr9:66763906-66764006 2.80e-04
+
-
chr18:57137388-57137488 4.14e-04
+
-
chr5:68206919-68207019 1.64e-04
+
-
chr12:70884547-70884647 8.14e-05
+
-
chr11:90524332-90524432 3.19e-05
+
-
chr7:138568415-138568515 8.14e-05
+
-
chr10:41632091-41632191 2.80e-04
+
-
chr5:140488129-140488229 8.14e-05
+
-
chr11:69793285-69793385 2.80e-04
+
-
chr7:148956813-148956913 1.80e-04
+
-
chr6:34857296-34857396 1.64e-04
+
-
chr10:20961510-20961610 2.47e-04
+
-
chr17:84135992-84136092 1.30e-04
+
-
chr15:83253024-83253124 3.14e-04
+
-
chr2:103324308-103324408 3.19e-05
+
-
chr8:87494750-87494850 8.14e-05
+
-
chr5:123643388-123643488 2.14e-04
+
-
chr11:68709695-68709795 9.74e-05
+
-
chr2:24832341-24832441 3.31e-04
+
-
chr4:118241267-118241367 3.19e-05
+
-
chr3:79383670-79383770 1.80e-04
+
-
chr5:89056517-89056617 3.19e-05
+
-
chr17:28946040-28946140 1.30e-04
+
-
chr9:66351711-66351811 1.64e-04
+
-
chr11:57767826-57767926 1.30e-04
+
-
chr3:60623496-60623596 1.60e-05
+
-
chr13:73612725-73612825 1.80e-04
+
-
chr14:69922788-69922888 4.79e-05
+
-
chr9:107206718-107206818 3.14e-04
+
-
chr13:112837038-112837138 1.30e-04
+
-
chr7:111007530-111007630 1.60e-05
+
-
chr5:34915767-34915867 1.64e-04
+
-
chr9:90156773-90156873 2.80e-04
+
-
chr15:81700367-81700467 3.65e-04
+
-
chr19:53259937-53260037 3.19e-05
+
-
chr16:91352914-91353014 8.14e-05
+
-
chr9:44096486-44096586 3.19e-05
+
-
chr2:180447046-180447146 4.79e-05
+
-
chr4:111203044-111203144 8.14e-05
+
-
chr9:42909938-42910038 8.14e-05
+
-
chr14:70865967-70866067 3.14e-04
+
-
chr4:124283413-124283513 8.14e-05
+
-
chr18:80416880-80416980 3.19e-05
+
-
chr11:58166514-58166614 8.14e-05
+
-
chr1:157123773-157123873 2.47e-04
+
-
chr18:61379741-61379841 4.79e-05
+
-
chr10:127624310-127624410 3.19e-05
+
-
chr15:96173312-96173412 1.64e-04
+
-
chr9:114375902-114376002 1.60e-05
+
-
chr3:51034101-51034201 2.80e-04
+
-
chr11:96809237-96809337 4.79e-05
+
-
chr5:144579744-144579844 9.74e-05
+
-
chr6:124614276-124614376 1.30e-04
+
-
chr4:44262429-44262529 1.30e-04
+
-
chr2:37405047-37405147 1.60e-05
+
-
chr19:24354047-24354147 1.60e-05
+
-
chr9:65063485-65063585 1.80e-04
+
-
chr4:118862381-118862481 1.64e-04
+
-
chr1:77295122-77295222 1.60e-05
+
-
chr4:135179215-135179315 5.12e-04
+
-
chr3:116562121-116562221 2.47e-04
+
-
chr11:97307230-97307330 8.14e-05
+
-
chr17:87913078-87913178 4.79e-05
+
-
chr4:128532893-128532993 2.80e-04
+
-
chr15:56455064-56455164 8.14e-05
+
-
chr2:120881648-120881748 1.64e-04
+
-
chr6:86027772-86027872 8.14e-05
+
-
chr6:38860751-38860851 3.19e-05
+
-
chr5:105994747-105994847 3.19e-05
+
-
chr15:66969077-66969177 1.30e-04
+
-
chr8:24254796-24254896 2.80e-04
+
-
chr11:44322389-44322489 1.64e-04
+
-
chr2:84652033-84652133 2.47e-04
+
-
chr12:77577208-77577308 7.27e-04
+
-
chr7:28233711-28233811 8.14e-05
+
-
chr13:74873194-74873294 8.14e-05
+
-
chr10:57527585-57527685 8.14e-05
+
-
chr11:32193434-32193534 2.47e-04
+
-
chr5:97380648-97380748 9.74e-05
+
-
chr16:34031622-34031722 1.80e-04
+
-
chr9:21362671-21362771 2.80e-04
+
-
chr5:28369135-28369235 8.14e-05
+
-
chr11:115367840-115367940 4.79e-05
+
-
chr7:106742881-106742981 9.74e-05
+
-
chr7:135432389-135432489 2.47e-04
+
-
chr3:96232776-96232876 2.14e-04
+
-
chr15:91082416-91082516 4.79e-05
+
-
chr19:11699767-11699867 2.14e-04
+
-
chr11:94858859-94858959 1.60e-05
+
-
chr19:44460305-44460405 1.80e-04
+
-
chr3:145253492-145253592 2.14e-04
+
-
chr5:37127175-37127275 1.30e-04
+
-
chr9:21940049-21940149 1.64e-04
+
-
chr4:151334552-151334652 3.14e-04
+
-
chr15:36250679-36250779 9.74e-05
+
-
chr2:132521381-132521481 1.80e-04
+
-
chr9:98389943-98390043 8.14e-05
+
-
chr5:140280105-140280205 4.79e-05
+
-
chr17:29575284-29575384 1.64e-04
+
-
chr12:35474090-35474190 1.64e-04
+
-
chr8:122895509-122895609 8.14e-05
+
-
chr5:27985060-27985160 4.79e-05
+
-
chr5:139858102-139858202 2.47e-04
+
-
chr4:111173963-111174063 4.79e-05
+
-
chr1:173210952-173211052 1.60e-05
+
-
chr17:47735006-47735106 1.30e-04
+
-
chr7:104332488-104332588 1.60e-05
+
-
chr4:43977111-43977211 3.14e-04
+
-
chr9:121335573-121335673 3.19e-05
+
-
chr8:126512500-126512600 8.14e-05
+
-
chr3:100351340-100351440 9.74e-05
+
-
chr4:46419779-46419879 9.74e-05
+
-
chr6:41654153-41654253 2.14e-04
+
-
chr13:94151186-94151286 9.74e-05
+
-
chr19:55358481-55358581 1.30e-04
+
-
chr16:32509880-32509980 1.60e-05
+
-
chr19:55940204-55940304 1.60e-05
+
-
chr7:28266696-28266796 8.14e-05
+
-
chr11:74652047-74652147 5.77e-04
+
-
chr4:118723531-118723631 1.30e-04
+
-
chr4:117601166-117601266 3.31e-04
+
-
chr7:139930395-139930495 9.74e-05
+
-
chr7:19832207-19832307 4.79e-05
+
-
chr4:41334759-41334859 2.47e-04
+
-
chr14:32981988-32982088 1.80e-04
+
-
chrX:146984104-146984204 9.74e-05
+
-
chr10:25018820-25018920 2.14e-04
+
-
chr2:31940725-31940825 3.31e-04
+
-
chr3:102933244-102933344 2.47e-04
+
-
chr11:80597918-80598018 3.14e-04
+
-
chr3:104477495-104477595 9.74e-05
+
-
chr11:94195590-94195690 3.31e-04
+
-
chr7:25940386-25940486 1.64e-04
+
-
chr9:57618594-57618694 3.65e-04
+
-
chr5:104483856-104483956 1.64e-04
+
-
chr15:82060183-82060283 1.64e-04
+
-
chr7:56247542-56247642 4.79e-05
+
-
chr5:38900630-38900730 4.79e-05
+
-
chr13:96735033-96735133 4.79e-05
+
-
chr4:62177553-62177653 2.47e-04
+
-
chr19:24348713-24348813 2.80e-04
+
-
chr17:24339802-24339902 3.19e-05
+
-
chr12:82044358-82044458 2.80e-04
+
-
chr15:58828420-58828520 1.64e-04
+
-
chr4:9588078-9588178 3.19e-05
+
-
chr11:87563495-87563595 8.14e-05
+
-
chr18:85054319-85054419 2.80e-04
+
-
chr5:65203207-65203307 1.60e-05
+
-
chr11:50038238-50038338 2.14e-04
+
-
chr13:104819583-104819683 1.80e-04
+
-
chr11:84636993-84637093 1.30e-04
+
-
chr7:128005139-128005239 2.14e-04
+
-
chr14:71023666-71023766 9.74e-05
+
-
chr5:121049618-121049718 8.14e-05
+
-
chr4:129974285-129974385 1.64e-04
+
-
chr16:44265654-44265754 3.14e-04
+
-
chr13:112446982-112447082 8.14e-05
+
-
chr2:152650541-152650641 2.80e-04
+
-
chr16:8686809-8686909 9.74e-05
+
-
chr2:103797834-103797934 8.14e-05
+
-
chr11:69186641-69186741 3.19e-05
+
-
 
0
20
40
60
80
100

Time 561.1 secs.

Motif 3

Previous Top

Summary

Sequence Logo

E-value 1.7e-001
Width 15
Sites 30
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

CTC[CT]C[CT][CGTA][TC]C[CT]C[TC][CG]C[CT]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr6:135115628-135115728 + 64 6.05e-09 GCACAGAGGG CTCCCCATCCCTCCC TCCCTGAGCA
chr4:41334759-41334859 - 80 2.37e-08 AGCTGC CTCCCTGTCCCTCCC CAGTTATCAG
chr11:57767826-57767926 + 49 2.69e-08 TCTTTCACTG CTCCCCTTCTCTGCC TCCGCCTCCT
chr9:42938268-42938368 + 85 7.92e-08 ACCTCCTCTC CTCTCCTCCCCTCCC A
chr15:82060183-82060283 + 54 1.36e-07 AGAGTAGACG CTCCCTTGCCCTCCC CGTCTTGTAT
chr5:97380648-97380748 - 6 3.19e-07 TTATCACCCC CTCCCGCCCTCTCCC TTAAC
chr9:57618594-57618694 - 17 3.97e-07 TGATCTGAGG CTCACCACCTCTCCC TTGTAGCTGC
chr13:76003199-76003299 + 85 3.97e-07 CTTGCTTTCC CTCCCCTGCTCTCCT C
chr19:53259937-53260037 + 69 4.44e-07 GGGTGATCGC CACCCTCTCTCTGCC TCTCTTACAC
chr6:41654153-41654253 - 38 6.77e-07 GAGTGAGCTC CTCCCTCTCTCCCCT GAGAAACTAA
chr6:72223026-72223126 + 71 7.52e-07 GTCTACCCAT CTTCCTGCCCCTCCC CCACCACCAC
chr1:9738234-9738334 + 45 7.52e-07 CACTCACTCA CTCTCGCTCTCTCCC TCAGACACAG
chr6:120555452-120555552 + 9 8.32e-07 CAGGCAAG CACCCTATCTCTGCC CCTATGCCCA
chr4:118863136-118863236 + 32 1.37e-06 AGCCAACTTG CTTCCCGCCCCTCCT CTCACGTCAC
chr6:142838756-142838856 - 55 1.37e-06 ACCACGCCCT CCCTCCCTCCCTCCC AGTCAAACAG
chr11:31712262-31712362 + 11 1.51e-06 TTTTTCTGAC CTCCCCACCTCTGAC CTCAGTCTCT
chr2:132521381-132521481 + 34 1.66e-06 CATGAGACTC CTCCCCATGCCTGCC CTGGTAGATA
chr10:93585404-93585504 - 46 1.83e-06 CTGACACTAT CTCCCCCGCCATCCT CACGGTCACC
chr2:78556316-78556416 - 45 2.60e-06 GCTTTGCCTC CACTCCTTCTCTCCT GGTGCCTCCT
chr12:82044358-82044458 - 64 3.07e-06 GACCTGCTAG CTGCCTTCCTCTCCC CAGAAATCGG
chr3:104843905-104844005 + 28 3.94e-06 CTCTGACTAA CACCCCAGCTCTGCT CCTTCTGGCC
chr5:137730860-137730960 + 57 3.94e-06 GACTCCATTT CTCCCCTCCCCTTAC CAATCTGCCA
chr5:121847519-121847619 + 36 5.00e-06 TTAAACCGCA CTCTCTCTCCACGCC TTCAACCACA
chr17:87913078-87913178 + 36 6.31e-06 TGCTTGGCGT CTCTCCCCCACCGCC CTACCCCCTC
chr4:118862381-118862481 + 9 6.31e-06 CAAGGGTT CTCTCTGTCTACCCC ACAGAGGGCC
chr3:101355778-101355878 + 75 7.35e-06 GGACATTCTA GTCACCGTCCCTGCC ATTGCCCAGC
chr7:16507689-16507789 + 41 9.16e-06 CTGAGAGCCC CTCGCCGTCCCTTCT CTATGCCATA
chr13:23643345-23643445 - 57 1.69e-05 ACAGAATCAC CTTCCCGCCCGCGCC TTTTCAGTCC
chr11:115626400-115626500 - 6 2.19e-05 CAGCTGTAAC CTCCACCGCCCCTCC GGGAG
chr11:87563495-87563595 - 22 4.20e-05 GCTTCCATGT CGCACTCTCCGTGCC GTAGGAGGGT

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr13:76003199-76003299 3.97e-07
+
-
chr3:101355778-101355878 7.35e-06
+
-
chr2:78556316-78556416 2.60e-06
+
-
chr6:142838756-142838856 1.37e-06
+
-
chr6:120555452-120555552 8.32e-07
+
-
chr4:118863136-118863236 1.37e-06
+
-
chr11:115626400-115626500 2.19e-05
+
-
chr5:121847519-121847619 5.00e-06
+
-
chr11:57767826-57767926 2.69e-08
+
-
chr1:9738234-9738334 7.52e-07
+
-
chr10:93585404-93585504 1.83e-06
+
-
chr7:16507689-16507789 9.16e-06
+
-
chr19:53259937-53260037 4.44e-07
+
-
chr4:118862381-118862481 6.31e-06
+
-
chr17:87913078-87913178 6.31e-06
+
-
chr5:97380648-97380748 3.19e-07
+
-
chr9:42938268-42938368 7.92e-08
+
-
chr5:137730860-137730960 3.94e-06
+
-
chr2:132521381-132521481 1.66e-06
+
-
chr11:31712262-31712362 1.51e-06
+
-
chr6:135115628-135115728 6.05e-09
+
-
chr6:41654153-41654253 6.77e-07
+
-
chr4:41334759-41334859 2.37e-08
+
-
chr13:23643345-23643445 1.69e-05
+
-
chr9:57618594-57618694 3.97e-07
+
-
chr15:82060183-82060283 1.36e-07
+
-
chr12:82044358-82044458 3.07e-06
+
-
chr11:87563495-87563595 4.20e-05
+
-
chr3:104843905-104844005 3.94e-06
+
-
chr6:72223026-72223126 7.52e-07
+
-
 
0
20
40
60
80
100

Time 810.3 secs.

All Motifs

Top

Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1
Motif 2
Motif 3
Name Combined p-value Motif Location
chr1:169314208-169314308 1.45e-03
+
-
chr10:60612190-60612290 1.54e-05
+
-
chr13:76003199-76003299 2.16e-05
+
-
chr7:16987195-16987295 6.25e-02
+
-
chr3:101355778-101355878 1.10e-02
+
-
chr2:78556316-78556416 2.53e-03
+
-
chr4:8631655-8631755 3.27e-03
+
-
chr1:136638482-136638582 6.87e-05
+
-
chr18:32702023-32702123 3.04e-03
+
-
chr6:142838756-142838856 1.87e-05
+
-
chr17:26651347-26651447 1.74e-03
+
-
chr5:45951565-45951665 1.30e-04
+
-
chr1:183078715-183078815 1.77e-03
+
-
chr13:100518008-100518108 2.92e-03
+
-
chr6:38874026-38874126 1.70e-01
+
-
chr9:108243080-108243180 7.55e-04
+
-
chr6:120555452-120555552 9.63e-04
+
-
chr8:97257705-97257805 1.84e-02
+
-
chr12:114390660-114390760 6.34e-03
+
-
chr4:118863136-118863236 6.17e-05
+
-
chr16:76323702-76323802 1.58e-03
+
-
chr9:66763906-66764006 1.01e-02
+
-
chr6:34107097-34107197 1.54e-02
+
-
chr10:93128960-93129060 1.15e-02
+
-
chr11:115626400-115626500 3.02e-02
+
-
chr11:32168937-32169037 2.74e-02
+
-
chr1:36976473-36976573 1.22e-02
+
-
chr14:21299130-21299230 6.77e-03
+
-
chr12:70884547-70884647 2.81e-02
+
-
chr11:90524332-90524432 1.47e-04
+
-
chr7:138568415-138568515 9.56e-03
+
-
chr10:41632091-41632191 2.62e-04
+
-
chr1:133343883-133343983 3.70e-04
+
-
chr1:88208803-88208903 1.45e-02
+
-
chr5:140488129-140488229 1.20e-01
+
-
chr7:103853792-103853892 3.07e-02
+
-
chr11:69793285-69793385 5.69e-04
+
-
chr12:3795439-3795539 3.65e-05
+
-
chr17:43466518-43466618 8.77e-04
+
-
chr7:148956813-148956913 4.65e-03
+
-
chr6:34857296-34857396 1.35e-03
+
-
chr18:57030487-57030587 6.73e-03
+
-
chr2:103324308-103324408 7.97e-03
+
-
chr8:87494750-87494850 1.01e-04
+
-
chr5:123643388-123643488 4.47e-04
+
-
chr12:70394726-70394826 3.17e-03
+
-
chr11:68709695-68709795 9.81e-04
+
-
chr2:24832341-24832441 1.59e-03
+
-
chr12:80012617-80012717 8.54e-03
+
-
chr2:25742741-25742841 8.57e-03
+
-
chr5:121847519-121847619 3.99e-03
+
-
chr16:49777000-49777100 3.62e-03
+
-
chr4:118241267-118241367 1.51e-04
+
-
chr16:32508975-32509075 4.08e-03
+
-
chr2:167454295-167454395 8.12e-03
+
-
chr3:79383670-79383770 2.88e-03
+
-
chr5:89056517-89056617 2.63e-04
+
-
chr17:47754580-47754680 1.03e-01
+
-
chr7:25993969-25994069 7.12e-03
+
-
chr11:57767826-57767926 9.52e-06
+
-
chr3:60623496-60623596 2.63e-05
+
-
chr13:73612725-73612825 7.88e-03
+
-
chr14:69922788-69922888 4.43e-04
+
-
chr1:169322898-169322998 7.82e-03
+
-
chr1:9738234-9738334 1.60e-04
+
-
chr9:107206718-107206818 1.03e-03
+
-
chr10:93585404-93585504 3.49e-04
+
-
chr7:128850883-128850983 1.32e-02
+
-
chr7:111007530-111007630 1.62e-04
+
-
chr5:34915767-34915867 8.94e-03
+
-
chr7:16507689-16507789 4.66e-03
+
-
chr2:28462972-28463072 9.20e-03
+
-
chr3:89612431-89612531 3.23e-06
+
-
chr15:81700367-81700467 9.00e-04
+
-
chr7:139915433-139915533 3.63e-04
+
-
chr5:118933401-118933501 5.14e-03
+
-
chr11:117187372-117187472 1.36e-03
+
-
chr19:53259937-53260037 5.71e-09
+
-
chr7:139969684-139969784 1.33e-04
+
-
chr19:45865027-45865127 4.20e-02
+
-
chr16:91352914-91353014 3.70e-05
+
-
chr15:78243390-78243490 2.21e-02
+
-
chr9:44096486-44096586 2.32e-04
+
-
chr2:180447046-180447146 2.53e-03
+
-
chr4:111203044-111203144 2.11e-01
+
-
chr18:13094467-13094567 7.27e-03
+
-
chr9:70774508-70774608 1.08e-03
+
-
chr3:88305500-88305600 1.74e-02
+
-
chr9:42909938-42910038 1.09e-02
+
-
chr15:76083900-76084000 4.00e-04
+
-
chr2:93306457-93306557 5.63e-03
+
-
chr14:70865967-70866067 2.68e-03
+
-
chr1:134979850-134979950 3.52e-03
+
-
chr4:124283413-124283513 2.68e-06
+
-
chr18:80416880-80416980 3.37e-04
+
-
chr11:115373883-115373983 1.81e-03
+
-
chr11:58166514-58166614 2.99e-02
+
-
chr15:98860006-98860106 3.53e-03
+
-
chr1:157123773-157123873 8.17e-03
+
-
chr18:61379741-61379841 2.87e-05
+
-
chr10:127624310-127624410 1.14e-01
+
-
chr13:56459266-56459366 1.67e-03
+
-
chr9:114375902-114376002 7.42e-05
+
-
chr17:48438407-48438507 3.72e-03
+
-
chr13:94158461-94158561 2.63e-02
+
-
chr11:96809237-96809337 4.13e-02
+
-
chr5:144579744-144579844 1.56e-02
+
-
chr17:29067183-29067283 2.76e-03
+
-
chr17:24289205-24289305 1.56e-02
+
-
chr13:3866266-3866366 3.83e-04
+
-
chr2:37405047-37405147 4.24e-02
+
-
chr5:139672808-139672908 8.99e-05
+
-
chr16:14166506-14166606 2.84e-02
+
-
chr5:144322338-144322438 3.52e-03
+
-
chr19:24354047-24354147 7.05e-02
+
-
chr4:44016940-44017040 1.00e-02
+
-
chr4:128287322-128287422 6.86e-02
+
-
chr11:121295413-121295513 4.65e-02
+
-
chr7:149565910-149566010 2.06e-03
+
-
chr19:10736425-10736525 2.16e-03
+
-
chr2:118499055-118499155 4.60e-02
+
-
chr10:40924608-40924708 3.72e-04
+
-
chr4:118862381-118862481 5.83e-05
+
-
chr1:77295122-77295222 3.81e-06
+
-
chr2:164599351-164599451 1.37e-01
+
-
chr14:63796627-63796727 1.87e-03
+
-
chr11:97307230-97307330 3.55e-02
+
-
chr4:134960762-134960862 7.92e-03
+
-
chr17:87913078-87913178 1.20e-04
+
-
chr6:81915769-81915869 1.45e-02
+
-
chr5:115468250-115468350 1.07e-02
+
-
chr12:112796794-112796894 5.91e-03
+
-
chr4:128532893-128532993 6.52e-05
+
-
chr15:56455064-56455164 6.12e-03
+
-
chr7:105490727-105490827 4.08e-03
+
-
chr6:86027772-86027872 1.44e-06
+
-
chr6:38860751-38860851 1.24e-02
+
-
chr5:105994747-105994847 6.77e-02
+
-
chr9:120025371-120025471 1.09e-02
+
-
chr4:132847121-132847221 1.27e-02
+
-
chr11:44322389-44322489 4.49e-04
+
-
chr9:24715045-24715145 2.62e-02
+
-
chr7:28233711-28233811 5.63e-05
+
-
chr4:153535135-153535235 4.69e-03
+
-
chr12:66059745-66059845 1.38e-02
+
-
chr14:70506762-70506862 3.93e-02
+
-
chr13:74873194-74873294 1.45e-03
+
-
chr10:57527585-57527685 6.44e-06
+
-
chr3:51492458-51492558 3.02e-04
+
-
chr5:97380648-97380748 1.30e-05
+
-
chr9:108709857-108709957 5.37e-02
+
-
chr13:112863645-112863745 3.59e-03
+
-
chr9:21362671-21362771 1.41e-02
+
-
chr17:25039619-25039719 2.13e-03
+
-
chr5:28369135-28369235 9.44e-04
+
-
chr11:115367840-115367940 3.12e-04
+
-
chr16:6504644-6504744 2.10e-03
+
-
chr19:6300361-6300461 4.11e-03
+
-
chr9:42938268-42938368 3.46e-05
+
-
chr14:41760574-41760674 1.91e-03
+
-
chr7:106742881-106742981 3.82e-02
+
-
chr7:148354574-148354674 2.55e-02
+
-
chr7:135432389-135432489 2.24e-03
+
-
chr11:104842983-104843083 5.35e-02
+
-
chr15:91082416-91082516 6.97e-04
+
-
chr7:128112657-128112757 7.57e-03
+
-
chr11:94858859-94858959 7.44e-06
+
-
chr17:25003112-25003212 3.50e-02
+
-
chr15:83139085-83139185 3.50e-03
+
-
chr5:137730860-137730960 1.52e-03
+
-
chr11:53839888-53839988 1.20e-02
+
-
chr5:65255865-65255965 6.75e-05
+
-
chr19:44460305-44460405 2.26e-03
+
-
chr3:145253492-145253592 9.64e-04
+
-
chr5:37127175-37127275 4.24e-04
+
-
chr5:89197189-89197289 1.01e-02
+
-
chr9:21940049-21940149 1.50e-04
+
-
chr4:151334552-151334652 1.93e-03
+
-
chr15:36250679-36250779 7.21e-03
+
-
chr5:30289969-30290069 4.76e-03
+
-
chr2:132521381-132521481 1.60e-04
+
-
chr9:98389943-98390043 1.53e-04
+
-
chr5:140280105-140280205 2.03e-02
+
-
chr9:113850421-113850521 1.39e-03
+
-
chr7:99891353-99891453 2.20e-02
+
-
chr17:45884716-45884816 1.44e-02
+
-
chr11:31712262-31712362 2.07e-03
+
-
chr6:57653289-57653389 3.54e-02
+
-
chr8:122895509-122895609 1.23e-01
+
-
chr5:27985060-27985160 1.99e-05
+
-
chr5:139858102-139858202 2.99e-04
+
-
chr4:111173963-111174063 5.41e-04
+
-
chr1:137838164-137838264 8.25e-04
+
-
chr8:108344711-108344811 3.57e-03
+
-
chr11:115374474-115374574 1.86e-05
+
-
chr1:173210952-173211052 2.06e-05
+
-
chr7:53193729-53193829 8.76e-03
+
-
chr17:47735006-47735106 4.61e-05
+
-
chr6:135115628-135115728 2.79e-07
+
-
chr7:104332488-104332588 7.53e-04
+
-
chr4:43977111-43977211 4.12e-05
+
-
chr9:121335573-121335673 7.73e-03
+
-
chr3:153454530-153454630 1.38e-03
+
-
chr5:108943418-108943518 4.06e-03
+
-
chr10:107550274-107550374 1.08e-02
+
-
chr3:84162553-84162653 8.41e-06
+
-
chr8:126512500-126512600 2.97e-02
+
-
chr4:135730666-135730766 7.75e-04
+
-
chr10:111261811-111261911 2.92e-05
+
-
chr3:100351340-100351440 5.39e-04
+
-
chr1:135693776-135693876 1.22e-02
+
-
chr4:46419779-46419879 4.57e-03
+
-
chr11:69759803-69759903 6.58e-03
+
-
chr6:41654153-41654253 3.32e-05
+
-
chr13:94151186-94151286 8.26e-03
+
-
chr11:102236405-102236505 8.96e-03
+
-
chr13:3862103-3862203 7.38e-03
+
-
chr15:95715580-95715680 1.89e-03
+
-
chr16:32509880-32509980 1.58e-02
+
-
chr19:55940204-55940304 9.56e-04
+
-
chr14:56154883-56154983 2.10e-03
+
-
chr7:28266696-28266796 2.10e-01
+
-
chr7:139930395-139930495 4.07e-03
+
-
chr7:19832207-19832307 5.54e-06
+
-
chr4:41334759-41334859 5.81e-07
+
-
chr1:155596606-155596706 1.65e-03
+
-
chr10:126642277-126642377 3.55e-02
+
-
chrX:146984104-146984204 2.45e-03
+
-
chr2:31940725-31940825 4.60e-03
+
-
chr11:101309433-101309533 8.59e-03
+
-
chr18:32719457-32719557 1.16e-02
+
-
chr11:86427476-86427576 1.66e-03
+
-
chr5:77087237-77087337 3.72e-02
+
-
chr13:23643345-23643445 1.73e-02
+
-
chr11:100871195-100871295 3.35e-02
+
-
chr19:6236070-6236170 1.01e-02
+
-
chr3:104477495-104477595 2.25e-01
+
-
chr9:70682447-70682547 7.11e-03
+
-
chr11:94195590-94195690 1.36e-02
+
-
chr5:64826642-64826742 3.23e-03
+
-
chr12:102194283-102194383 3.52e-03
+
-
chr18:62325792-62325892 9.88e-03
+
-
chr9:57618594-57618694 2.11e-05
+
-
chr15:82060183-82060283 1.22e-07
+
-
chr7:56247542-56247642 5.66e-03
+
-
chr2:156710230-156710330 5.19e-04
+
-
chr5:38900630-38900730 1.49e-01
+
-
chr5:118929927-118930027 2.45e-02
+
-
chr13:112833730-112833830 2.99e-03
+
-
chr1:92185726-92185826 1.29e-01
+
-
chr4:128724869-128724969 1.49e-04
+
-
chr8:85946912-85947012 4.07e-02
+
-
chr13:96735033-96735133 1.56e-02
+
-
chr17:85277579-85277679 9.38e-04
+
-
chr14:55043398-55043498 2.10e-02
+
-
chr12:112505815-112505915 2.60e-02
+
-
chr17:33229103-33229203 7.45e-03
+
-
chr4:44084689-44084789 2.14e-04
+
-
chr4:62177553-62177653 1.73e-03
+
-
chr11:30901439-30901539 1.21e-02
+
-
chr6:72324694-72324794 1.07e-02
+
-
chr17:24339802-24339902 1.10e-02
+
-
chr8:24164440-24164540 1.07e-03
+
-
chr11:96817330-96817430 5.41e-03
+
-
chr12:82044358-82044458 5.67e-05
+
-
chr7:149571622-149571722 1.26e-02
+
-
chr11:95666703-95666803 1.65e-03
+
-
chr15:58719281-58719381 4.69e-03
+
-
chr15:58828420-58828520 2.62e-04
+
-
chr17:84179515-84179615 1.41e-03
+
-
chr6:83345790-83345890 5.43e-02
+
-
chr4:9588078-9588178 8.26e-05
+
-
chr2:112350167-112350267 1.23e-02
+
-
chr11:87563495-87563595 2.66e-03
+
-
chr18:85054319-85054419 6.85e-04
+
-
chr2:131039492-131039592 1.77e-02
+
-
chr3:104843905-104844005 7.41e-03
+
-
chr5:73746598-73746698 3.57e-02
+
-
chr5:65203207-65203307 3.23e-04
+
-
chr11:50038238-50038338 4.55e-04
+
-
chr11:84636993-84637093 5.36e-03
+
-
chr14:79702844-79702944 2.55e-05
+
-
chr14:71023666-71023766 7.52e-03
+
-
chr5:121049618-121049718 6.27e-03
+
-
chr4:129140945-129141045 3.08e-03
+
-
chr16:44265654-44265754 5.28e-03
+
-
chr13:112446982-112447082 1.04e-01
+
-
chr16:8686809-8686909 1.60e-04
+
-
chr2:103797834-103797934 4.28e-02
+
-
chr6:72223026-72223126 3.20e-04
+
-
chr11:69186641-69186741 3.24e-05
+
-
chr8:107823858-107823958 9.94e-05
+
-
chr8:109927244-109927344 4.52e-03
+
-
chr5:96888622-96888722 1.39e-02
+
-
chr3:88167296-88167396 1.66e-02
+
-
chr17:26079525-26079625 4.37e-03
+
-
 
0
20
40
60
80
100
Motif 1
Motif 2
Motif 3
Top
MEME version
4.9.1 (Release date: Fri Aug 23 16:49:42 2013 +1000)
Reference
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
show training set...
Command line summary

Letter frequencies in dataset
A: 0.249   C: 0.251   G: 0.251   T: 0.249

Background letter frequencies (from memechip_example_output_files/background):
A: 0.256   C: 0.244   G: 0.244   T: 0.256

Stopping Reason
Stopped because nmotifs = 3 reached. Program ran on tlb-takumi-lt.imb.uq.edu.au.
show model parameters...

Explanation of MEME Results

Top

The MEME results consist of

  • The overview of all discovered motifs.
  • Information on each of the motifs MEME discovered, including:
    1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
    2. A sequence LOGO.
    3. Downloadable LOGO files suitable for publication.
    4. A regular expression describing the motif.
    5. Some further analysis that can be performed on the motif.
    6. A list of data formats describing the motif.
    7. The contributing sites of the motif sorted by p-value and aligned with each other.
    8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
  • A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
  • The version of MEME and the date it was released.
  • The reference to cite if you use MEME in your research.
  • A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
  • The command line summary detailing the parameters with which you ran MEME.
  • The reason why MEME stopped and the name of the CPU on which it ran.
  • This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value
The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width
The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites
The number of sites contributing to the construction of the motif.
Log Likelihood Ratio
The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content
The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy
The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).
Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

  • Firefox 3.5 and above
  • Safari 4 and above
  • Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)
          

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)
          

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by

            height = f(a,i) * R(i)                              (3)
          

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)
          

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS COLOR
A RED
C BLUE
G ORANGE
T GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS COLOR PROPERTIES
A, C, F, I, L, V, W and M BLUE Most hydrophobic[Kyte and Doolittle, 1982]
NQST GREEN Polar, non-charged, non-aliphatic residues
DE MAGENTA Acidic
KR RED Positively charged
H PINK  
G ORANGE  
P YELLOW  
Y TURQUOISE  

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation
Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC
Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format
The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width
The width of the generated image in centimetres.
Height
The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST
Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO
Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM
Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO
Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS
Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.
Data Formats

The extracted data is avaliable in the following formats.

PSPM Format
The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format
The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format
For use with BLOCKS tools.
FASTA Format
The FASTA format as described here.
Raw Format
Just the sites of the sequences that contributed to the motif. One site per line.
Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.