
MoMo Results
Modification Motifs
MoMo version 5.0.0 (Release date: Fri Sep 29 13:40:17 2017 -0700)
For further information on how to interpret these results
or to get a copy of the MoMo software please access
http://meme.nbcr.net
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
Results
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The full set of motif occurences can be seen in the
tab-delimited plain text output file
momo.txt.
-
SUMMARY:
- Number of Mods: 103
- Number of Mod Types: 1
- Number of Mods Passing Filters: 43
- Number of Mod Types Passing Filters: 1
final_pattern: C160 foreground_size: 43
- GTACDKH
- RRLCELI
- AFDCLRK
- NPECRFA
- XRTCVVE
- RTACERA
- XXKCCEH
- XKCCEHF
- LALCHSV
- ELWCVIN
- DVACWGA
- NGMCGSI
- KAYCDDT
- NGDCECC
- DCECCGR
- CECCGRA
- TQFCPED
- XKTCRSD
- KDSCTEN
- VGICATC
- CATCVLR
- LAVCGIA
- AAICQKR
- EINCCLK
- INCCLKQ
- EILCSDK
- KRDCLRL
- AENCRIX
- XXRCANC
- CANCVKE
- SKTCRSX
- PGLCERF
- XXRCVLA
- EYICEKI
- IYKCGGI
- KFFCALF
- LSICGEE
- HQLCQVS
- RKFCQYE
- XXRCTKI
- NPECRFX
- XXKCGGI
- XXKCTIN
DEBUGGING INFORMATION
Command line:
/Users/t.bailey/meme_hg/meme/src/parallel/momo simple --oc results/momo16 --psm-type comet --sequence-column modified sequence momo/small-comet-mod.txt
PARAMETERS:
algorithm: simple
post-translationally modified peptide filenames:
file 1: momo/small-comet-mod.txt
PTM filetype: comet
modified peptide column: 'modified sequence'
motif width: 7
filter: false
remove unknowns: false
eliminate repeats: true
eliminate repeat width: 7
min occurrences: 5
single motif per mass: false
hash fasta: false
hash fasta width: 0
This information can be useful in the event you wish to report a
problem with the MoMo software.
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