High-scoring Motif Occurences Debugging Information Results in MEME format




MoMo version 5.0.0 (Release date: Fri Sep 29 13:40:17 2017 -0700)

For further information on how to interpret these results or to get a copy of the MoMo software please access http://meme.nbcr.net

If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017. [full text]


Results


DEBUGGING INFORMATION

Command line:

/Users/t.bailey/meme_hg/meme/src/parallel/momo simple --oc results/momo1 --sequence-column sequence momo/small-tide-mod.txt
PARAMETERS:

algorithm: simple
post-translationally modified peptide filenames: 
	file 1: momo/small-tide-mod.txt
PTM filetype: PSM
modified peptide column: 'sequence'
motif width: 7
filter: false
remove unknowns: false
eliminate repeats: true
	eliminate repeat width: 7
min occurrences: 5
single motif per mass: false
hash fasta: false
	hash fasta width: 0


This information can be useful in the event you wish to report a problem with the MoMo software.


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