MoMo Results
Modification Motifs
MoMo version 5.0.0 (Release date: Fri Sep 29 13:40:17 2017 -0700)
For further information on how to interpret these results
or to get a copy of the MoMo software please access
http://meme.nbcr.net
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
Results
The full set of motif occurences can be seen in the
tab-delimited plain text output file
momo.txt .
SUMMARY:
Algorithm: simple
Number of Mods: 435
Number of Mod Types: 3
Number of Mods Passing Filters: 435
Number of Mod Types Passing Filters: 3
final_pattern: S79.9 foreground_matches: 218
Show/Hide Motif Occurrences
XXXSLGI
XXQSGLA
GALSRXX
XXQSGLA
XMHSAGK
XXXSLGI
GALSRXX
XXXSEGL
GALSRXX
XMHSAGK
GALSRXX
SSTSRXX
XXFSGSL
XGSSQQP
XXGSSQQ
XXFSGSL
FSGSLKX
XXFSGSL
FSGSLKX
XXFSGSL
XXXSIEG
GIHSRXX
XMMSVNR
XXMSCII
DNSSATK
XXMSCII
GIHSRXX
XXNSTIP
XGSSQQP
XXLSSAE
XSHSEGL
XGSSQQP
XXXSHSE
XXXSYNW
XXGSSQQ
XXLSSAE
XXGSDLV
EYISRXX
XXXSGDT
TCLSNKX
DTASKXX
NDISKXX
YLESGKX
YLESGKX
XHASLIL
EGTSFRX
RPGSKXX
XXXSHTL
XXDSDDN
XXXSDTP
XXDSDDN
XXGSMHD
XXDSDDN
XEISDVF
ELQSLLG
XEISDVF
SMGSGKX
XXXSPFY
WANSSRX
SDNSASS
NSASSGP
NSASSGP
SDNSASS
XIQSCQD
VLLSRXX
SASSGPK
PNPSTGK
NSASSGP
IYSSRXX
SASSGPK
PNPSTGK
XXNSPWV
MIYSSRX
NGVSYGR
XXNSPWV
XIQSCQD
XXXSMEL
VNNSFYK
VNNSFYK
XIQSCQD
PNPSTGK
XVISVSS
VNNSFYK
AQTSIDT
SVSSNSN
XXDSVTY
ENSSQNE
VNNSFYK
SSNSNSR
VNNSFYK
SEQSKXX
AATSEQS
SEQSKXX
SEQSKXX
SEQSKXX
SEQSKXX
CPNSTGA
AATSEQS
DMMSSSL
AQDSPEL
GEVSVFV
HFLSYPV
HFLSYPV
DFGSAVV
VVESPEG
HFLSYPV
DMMSSSL
DMMSSSL
ETLSKXX
XXISEGI
DMMSSSL
PISSKXX
XXISEGI
AQDSPEL
MMSSSLR
MMSSSLR
VPISSKX
MSSSLRX
DMMSSSL
DMMSSSL
MMSSSLR
MMSSSLR
MSSSLRX
VIVSGIV
HSSSHSI
XTASEFD
AHSSSHS
SSHSIKX
EFDSAIA
EFDSAIA
TAHSSSH
XXMSESN
XTASEFD
HEHSKXX
HSSSHSI
VPISSKX
EFDSAIA
AHSSSHS
PISSKXX
XXMSESN
TAHSSSH
XXMSETN
SSHSIKX
VIVSGIV
XXXSKPV
XXXSKPV
XIISYAQ
XXXSKPV
XIISYAQ
HLESVVR
HLESVVR
XXXSKPV
LNISGEF
HLESVVR
EFDSAIA
ALTSFLG
XTASEFD
HLESVVR
XIISYAQ
XXXSKPV
DEFSTKX
LNFSRPW
XXYSFSL
XXXSKPV
XIISYAQ
XXXSKPV
XXXSKPV
PGDSLYC
XIISYAQ
XXXSKPV
XIISYAQ
YSFSLTT
FSPSGKX
TTFSPSG
XXYSFSL
XLVSNGT
LNFSRPW
XXYSFSL
LNFSRPW
GTDSHMV
XXYSFSL
AEWSGLS
YSFSLTT
YSFSLTT
XXXSKPV
HPVSHGH
ALTSFLG
VSISFLK
EPVSISF
PTESRXX
ELLSHIA
DCTSLLL
LSDSLHM
GLLSDSL
TLDSAQV
DAESALN
XXISAVS
SAVSTYF
DAESALN
PTLSFKX
LSDSLHM
GLLSDSL
GVVSKXX
EEQSIND
LSSSIGV
LSDSLHM
GLLSDSL
DCTSLLL
DAESALN
PTLSFKX
DAESALN
DFLSKXX
PTLSFKX
DAESALN
PTLSFKX
DAESALN
PTLSFKX
TLDSAQV
final_pattern: T79.9 foreground_matches: 136
Show/Hide Motif Occurrences
XXGTDLP
XXXTGAE
XXXTGAE
XXXTGAE
XXITVNG
XXGTPVE
XXXTGAE
XVITGNK
XVITGNK
XXXTGAE
XXXTGAE
YGVTDKX
FSSTSRX
XQLTEGV
GMETARX
XQLTEGV
XQLTEGV
XNSTIPT
XEQTEAA
XEQTEAA
XXVTEPV
XEQTEAA
XDETVAP
EPVTKXX
XNVTDPI
TDATFIR
XXXTDAT
XDETVAP
XDETVAP
ESVTEIK
SLDTFIK
XESTIDI
WIDTASK
GELTRXX
XXVTCLS
XFQTGED
XIFTEEM
TDATFIR
XRPTNPF
NFETRXX
AAATAAM
XDLTEFL
FDDTNPE
FWVTNLK
XXXTYFF
LIETQRX
XRPTNPF
XXXTTQD
MELTANE
XXXTVWA
LIETQRX
FNLTEND
PAMTTRX
MELTANE
XXXTFSD
XXXTYFF
NPSTGKX
XXCTING
AGVTPTK
EELTGVR
MELTANE
MELTANE
NPSTGKX
XXXTTQD
XGITIDI
XXTTTPA
XXXTTTP
PAATSEQ
XTTTPAA
NPSTGKX
SIDTLKX
NPSTGKX
XXYTGKP
XXDTIDF
XXXTHEP
PAATSEQ
PNSTGAE
XXVTAVV
XXETAQD
XXXTVLD
XXVTAVV
XXXTDLP
VNNTRXX
XXXTVLD
XXETAQD
LAFTLGV
PPPTHND
VNNTRXX
VDDTRXX
XXXTASE
XXYTSVS
XXXTASE
LAFTLGV
MSETNVD
LWDTNYA
TTETQRX
LWDTNYA
VALTSFL
XXXTASE
EFSTKXX
SLTTFSP
VALTSFL
YGTTETQ
VPLTEGD
SNGTDSH
XXTTHPV
FSLTTFS
XXXTTHP
NGITGPY
NIPTESR
ELFTSLG
FQYTKXX
DETTFQY
PDETTFQ
NIPTESR
FIYTDVL
EFPTGKX
TLATVDH
NIPTESR
VDCTLAT
LDCTSLL
NEWTLDS
AVSTYFE
VKPTLSF
EFPTGKX
NIPTESR
NEWTLDS
NEWTLDS
VKPTLSF
VKPTLSF
NEWTLDS
XWYTLLE
VKPTLSF
VKPTLSF
VKPTLSF
NEWTLDS
final_pattern: Y79.9 foreground_matches: 81
Show/Hide Motif Occurrences
XXSYEIL
XXXYEAL
XXXYNDN
XXXYEDV
XXEYLES
XXEYLES
XXXYEDV
XXAYVQF
XXEYILG
PLLYRXX
LQEYLDK
XXTYFFS
QGIYRXX
XXXYLIE
XXXYAFE
XXXYVLE
AFEYARX
XXXYKPG
XXXYWYF
XXTYFFS
XXXYEVG
QGIYRXX
XXXYKPG
XXXYEVG
NSFYKXX
NSFYKXX
FNLYRXX
XXFYNDV
GVSYGRX
XXFYNDV
NSFYKXX
XXEYVQG
XXFYNDV
VNEYVNV
XXXYLVN
NSFYKXX
VEGYVGR
XXXYTGK
NSFYKXX
NSFYKXX
XXFYNDV
XXEYVQG
VNEYVNV
VEGYVGR
FLSYPVV
XXXYYGG
FLSYPVV
FLSYPVV
QFFYKXX
XXXYTSV
ALCYSIS
DTNYAKX
FLGYKXX
IISYAQG
XXFYSLW
XXXYSFS
XXFYSLW
IISYAQG
FLGYKXX
XXXYSFS
XXXYSFS
XXXYSFS
ALIYRXX
FLGYKXX
XXXYAVA
TGPYGKX
IGLYKXX
GLDYHHP
TFQYTKX
IGLYKXX
GLDYHHP
IGLYKXX
IFIYTDV
SFVYVVS
GLDYHHP
GLDYHHP
VLLYNAK
MEQYRXX
IGLYKXX
GLDYHHP
XXWYTLL
DEBUGGING INFORMATION
Command line:
/Users/t.bailey/meme_hg/meme/src/parallel/momo simple --oc results/momo6 --psm-type tide --eliminate-repeats 0 momo/small-tide-mod.txt
PARAMETERS:
algorithm: simple
post-translationally modified peptide filenames:
file 1: momo/small-tide-mod.txt
PTM filetype: tide
modified peptide column: 'sequence'
motif width: 7
filter: false
remove unknowns: false
eliminate repeats: false
min occurrences: 5
single motif per mass: false
hash fasta: false
hash fasta width: 0
This information can be useful in the event you wish to report a
problem with the MoMo software.
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