MoMo Results
Modification Motifs
MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)
For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html .
To get a copy of the MoMo software please access http://meme-suite.org .
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
Peptide Preprocessing
Algorithm: simple
Number of Mods: 435
Number of Mod Types: 1
Number of Mods Passing Filters: 252
Number of Mod Types Passing Filters: 1
Results
motif: X79.9 fg_matches: 252
Show/Hide Motif Occurrences
XXXSLGI
XXQSGLA
XXGTDLP
XXXTGAE
GALSRXX
XMHSAGK
XXITVNG
XXGTPVE
XXXSEGL
XVITGNK
YGVTDKX
SSTSRXX
FSSTSRX
XXFSGSL
XGSSQQP
XXGSSQQ
FSGSLKX
XXXSIEG
XQLTEGV
GMETARX
GIHSRXX
XMMSVNR
XXMSCII
XXSYEIL
DNSSATK
XXXYEAL
XXXYNDN
XXNSTIP
XNSTIPT
XEQTEAA
XXLSSAE
XXXYEDV
XSHSEGL
XXXSHSE
XXXSYNW
XXVTEPV
XDETVAP
XXGSDLV
EPVTKXX
EYISRXX
XNVTDPI
TDATFIR
XXXTDAT
XXXSGDT
ESVTEIK
SLDTFIK
XESTIDI
WIDTASK
GELTRXX
XXVTCLS
XFQTGED
TCLSNKX
XXEYLES
DTASKXX
NDISKXX
YLESGKX
XHASLIL
XIFTEEM
EGTSFRX
RPGSKXX
XXAYVQF
XRPTNPF
XXEYILG
XXXSHTL
XXDSDDN
PLLYRXX
NFETRXX
AAATAAM
XDLTEFL
XXXSDTP
FDDTNPE
XXGSMHD
LQEYLDK
FWVTNLK
XXXTYFF
XEISDVF
XXTYFFS
LIETQRX
ELQSLLG
QGIYRXX
XXXTTQD
XXXYLIE
MELTANE
SMGSGKX
XXXYAFE
XXXTVWA
XXXSPFY
WANSSRX
XXXYVLE
AFEYARX
FNLTEND
PAMTTRX
XXXTFSD
XXXYKPG
SDNSASS
XXXYWYF
XXXYEVG
NSASSGP
XIQSCQD
VLLSRXX
SASSGPK
PNPSTGK
NPSTGKX
NSFYKXX
XXCTING
AGVTPTK
EELTGVR
IYSSRXX
XXNSPWV
MIYSSRX
NGVSYGR
FNLYRXX
XXXSMEL
VNNSFYK
XGITIDI
XXFYNDV
GVSYGRX
XXTTTPA
XXXTTTP
PAATSEQ
XXEYVQG
XTTTPAA
VNEYVNV
SIDTLKX
XXXYLVN
XVISVSS
AQTSIDT
SVSSNSN
XXDSVTY
VEGYVGR
XXYTGKP
XXXYTGK
ENSSQNE
SSNSNSR
SEQSKXX
XXDTIDF
AATSEQS
XXXTHEP
CPNSTGA
PNSTGAE
DMMSSSL
FLSYPVV
AQDSPEL
GEVSVFV
XXVTAVV
XXXYYGG
XXETAQD
HFLSYPV
DFGSAVV
XXXTVLD
XXXTDLP
VVESPEG
VNNTRXX
ETLSKXX
XXISEGI
PISSKXX
MMSSSLR
VPISSKX
MSSSLRX
LAFTLGV
PPPTHND
VIVSGIV
HSSSHSI
XTASEFD
VDDTRXX
AHSSSHS
XXXTASE
QFFYKXX
XXYTSVS
SSHSIKX
EFDSAIA
TAHSSSH
XXMSESN
XXXYTSV
HEHSKXX
ALCYSIS
XXMSETN
MSETNVD
XXXSKPV
XIISYAQ
HLESVVR
LWDTNYA
TTETQRX
LNISGEF
DTNYAKX
ALTSFLG
VALTSFL
FLGYKXX
EFSTKXX
DEFSTKX
IISYAQG
SLTTFSP
XXFYSLW
LNFSRPW
XXYSFSL
XXXYSFS
PGDSLYC
YGTTETQ
VPLTEGD
YSFSLTT
FSPSGKX
TTFSPSG
XLVSNGT
GTDSHMV
SNGTDSH
AEWSGLS
XXTTHPV
FSLTTFS
XXXTTHP
ALIYRXX
HPVSHGH
XXXYAVA
TGPYGKX
NGITGPY
IGLYKXX
VSISFLK
NIPTESR
EPVSISF
PTESRXX
GLDYHHP
TFQYTKX
ELFTSLG
FQYTKXX
DETTFQY
PDETTFQ
ELLSHIA
IFIYTDV
FIYTDVL
EFPTGKX
SFVYVVS
VLLYNAK
TLATVDH
VDCTLAT
DCTSLLL
LSDSLHM
GLLSDSL
LDCTSLL
NEWTLDS
TLDSAQV
DAESALN
XXISAVS
AVSTYFE
SAVSTYF
PTLSFKX
VKPTLSF
MEQYRXX
GVVSKXX
EEQSIND
LSSSIGV
DFLSKXX
XWYTLLE
XXWYTLL
DEBUGGING INFORMATION
Command line:
momo simple --oc results/momo3 --psm-type tide --single-motif-per-mass momo/small-tide-mod.txt
PARAMETERS:
algorithm: simple
post-translationally modified peptide filenames:
file 1: momo/small-tide-mod.txt
PTM filetype: tide
modified peptide column: 'sequence'
motif width: 7
filter: false
remove unknowns: false
eliminate repeats: true
eliminate repeat width: 7
min occurrences: 5
single motif per mass: true
hash fasta: false
hash fasta width: 0
This information can be useful in the event you wish to report a
problem with the MoMo software.
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