MoMo Results
Modification Motifs
MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)
For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html .
To get a copy of the MoMo software please access http://meme-suite.org .
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
Peptide Preprocessing
Algorithm: simple
Number of Mods: 435
Number of Mod Types: 3
Number of Mods Passing Filters: 147
Number of Mod Types Passing Filters: 3
Results
motif: S79.9 fg_matches: 71
Show/Hide Motif Occurrences
XXXSLGI
XXQSGLA
GALSRXX
XMHSAGK
XXXSEGL
XXFSGSL
XGSSQQP
XXGSSQQ
GIHSRXX
XMMSVNR
XXMSCII
XXNSTIP
XSHSEGL
XXXSHSE
XXLSSAE
XXGSDLV
EYISRXX
NDISKXX
YLESGKX
RPGSKXX
ELQSLLG
XEISDVF
XXXSPFY
SDNSASS
NSASSGP
XIQSCQD
PNPSTGK
IYSSRXX
XXNSPWV
VNNSFYK
XVISVSS
AQTSIDT
XXDSVTY
ENSSQNE
SEQSKXX
CPNSTGA
DMMSSSL
GEVSVFV
HFLSYPV
XXISEGI
PISSKXX
VPISSKX
MMSSSLR
VIVSGIV
HSSSHSI
XTASEFD
AHSSSHS
EFDSAIA
XXMSESN
XXXSKPV
HLESVVR
ALTSFLG
XIISYAQ
DEFSTKX
XXYSFSL
YSFSLTT
FSPSGKX
TTFSPSG
XLVSNGT
LNFSRPW
GTDSHMV
AEWSGLS
PTESRXX
ELLSHIA
DCTSLLL
LSDSLHM
XXISAVS
DAESALN
GVVSKXX
DFLSKXX
PTLSFKX
motif: T79.9 fg_matches: 47
Show/Hide Motif Occurrences
XXXTGAE
XXITVNG
YGVTDKX
GMETARX
XQLTEGV
XNSTIPT
XEQTEAA
XXVTEPV
XDETVAP
TDATFIR
ESVTEIK
SLDTFIK
WIDTASK
XXVTCLS
XFQTGED
NFETRXX
XDLTEFL
XXXTYFF
LIETQRX
XXXTTQD
MELTANE
XXXTVWA
FNLTEND
NPSTGKX
XXCTING
XGITIDI
XXTTTPA
XXXTTTP
PAATSEQ
SIDTLKX
XXVTAVV
XXXTVLD
XXXTDLP
XXXTASE
XXYTSVS
LAFTLGV
EFSTKXX
VPLTEGD
XXTTHPV
NIPTESR
FQYTKXX
DETTFQY
FIYTDVL
EFPTGKX
NEWTLDS
VKPTLSF
XWYTLLE
motif: Y79.9 fg_matches: 29
Show/Hide Motif Occurrences
XXSYEIL
XXXYEDV
XXEYLES
XXAYVQF
XXEYILG
PLLYRXX
LQEYLDK
XXXYAFE
XXXYKPG
XXXYEVG
NSFYKXX
FNLYRXX
XXFYNDV
XXEYVQG
XXXYLVN
VEGYVGR
FLSYPVV
XXXYYGG
XXXYTSV
DTNYAKX
IISYAQG
XXXYSFS
ALIYRXX
XXXYAVA
IGLYKXX
TFQYTKX
GLDYHHP
IFIYTDV
XXWYTLL
DEBUGGING INFORMATION
Command line:
momo simple --oc results/momo7 --psm-type tide --filter 'xcorr rank,le,3' momo/small-tide-mod.txt
PARAMETERS:
algorithm: simple
post-translationally modified peptide filenames:
file 1: momo/small-tide-mod.txt
PTM filetype: tide
modified peptide column: 'sequence'
motif width: 7
filter: true
filter field: 'xcorr rank'
filter type: <=
filter threshold: 3
remove unknowns: false
eliminate repeats: true
eliminate repeat width: 7
min occurrences: 5
single motif per mass: false
hash fasta: false
hash fasta width: 0
This information can be useful in the event you wish to report a
problem with the MoMo software.
Go to top