MoMo Results
Modification Motifs
MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)
For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html .
To get a copy of the MoMo software please access http://meme-suite.org .
If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017.
[full text]
Peptide Preprocessing
Algorithm: simple
Number of Mods: 435
Number of Mod Types: 3
Number of Mods Passing Filters: 252
Number of Mod Types Passing Filters: 3
Results
motif: S79.9 fg_matches: 114
Show/Hide Motif Occurrences
XXXSLGI
XXQSGLA
GALSRXX
XMHSAGK
XXXSEGL
SSTSRXX
XXFSGSL
XGSSQQP
XXGSSQQ
FSGSLKX
XXXSIEG
GIHSRXX
XMMSVNR
XXMSCII
DNSSATK
XXNSTIP
XXLSSAE
XSHSEGL
XXXSHSE
XXXSYNW
XXGSDLV
EYISRXX
XXXSGDT
TCLSNKX
DTASKXX
NDISKXX
YLESGKX
XHASLIL
EGTSFRX
RPGSKXX
XXXSHTL
XXDSDDN
XXXSDTP
XXGSMHD
XEISDVF
ELQSLLG
SMGSGKX
XXXSPFY
WANSSRX
SDNSASS
NSASSGP
XIQSCQD
VLLSRXX
SASSGPK
PNPSTGK
IYSSRXX
XXNSPWV
MIYSSRX
NGVSYGR
XXXSMEL
VNNSFYK
XVISVSS
AQTSIDT
SVSSNSN
XXDSVTY
ENSSQNE
SSNSNSR
SEQSKXX
AATSEQS
CPNSTGA
DMMSSSL
AQDSPEL
GEVSVFV
HFLSYPV
DFGSAVV
VVESPEG
ETLSKXX
XXISEGI
PISSKXX
MMSSSLR
VPISSKX
MSSSLRX
VIVSGIV
HSSSHSI
XTASEFD
AHSSSHS
SSHSIKX
EFDSAIA
TAHSSSH
XXMSESN
HEHSKXX
XXMSETN
XXXSKPV
XIISYAQ
HLESVVR
LNISGEF
ALTSFLG
DEFSTKX
LNFSRPW
XXYSFSL
PGDSLYC
YSFSLTT
FSPSGKX
TTFSPSG
XLVSNGT
GTDSHMV
AEWSGLS
HPVSHGH
VSISFLK
EPVSISF
PTESRXX
ELLSHIA
DCTSLLL
LSDSLHM
GLLSDSL
TLDSAQV
DAESALN
XXISAVS
SAVSTYF
PTLSFKX
GVVSKXX
EEQSIND
LSSSIGV
DFLSKXX
motif: T79.9 fg_matches: 90
Show/Hide Motif Occurrences
XXGTDLP
XXXTGAE
XXITVNG
XXGTPVE
XVITGNK
YGVTDKX
FSSTSRX
XQLTEGV
GMETARX
XNSTIPT
XEQTEAA
XXVTEPV
XDETVAP
EPVTKXX
XNVTDPI
TDATFIR
XXXTDAT
ESVTEIK
SLDTFIK
XESTIDI
WIDTASK
GELTRXX
XXVTCLS
XFQTGED
XIFTEEM
XRPTNPF
NFETRXX
AAATAAM
XDLTEFL
FDDTNPE
FWVTNLK
XXXTYFF
LIETQRX
XXXTTQD
MELTANE
XXXTVWA
FNLTEND
PAMTTRX
XXXTFSD
NPSTGKX
XXCTING
AGVTPTK
EELTGVR
XGITIDI
XXTTTPA
XXXTTTP
PAATSEQ
XTTTPAA
SIDTLKX
XXYTGKP
XXDTIDF
XXXTHEP
PNSTGAE
XXVTAVV
XXETAQD
XXXTVLD
XXXTDLP
VNNTRXX
LAFTLGV
PPPTHND
VDDTRXX
XXXTASE
XXYTSVS
MSETNVD
LWDTNYA
TTETQRX
VALTSFL
EFSTKXX
SLTTFSP
YGTTETQ
VPLTEGD
SNGTDSH
XXTTHPV
FSLTTFS
XXXTTHP
NGITGPY
NIPTESR
ELFTSLG
FQYTKXX
DETTFQY
PDETTFQ
FIYTDVL
EFPTGKX
TLATVDH
VDCTLAT
LDCTSLL
NEWTLDS
AVSTYFE
VKPTLSF
XWYTLLE
motif: Y79.9 fg_matches: 48
Show/Hide Motif Occurrences
XXSYEIL
XXXYEAL
XXXYNDN
XXXYEDV
XXEYLES
XXAYVQF
XXEYILG
PLLYRXX
LQEYLDK
XXTYFFS
QGIYRXX
XXXYLIE
XXXYAFE
XXXYVLE
AFEYARX
XXXYKPG
XXXYWYF
XXXYEVG
NSFYKXX
FNLYRXX
XXFYNDV
GVSYGRX
XXEYVQG
VNEYVNV
XXXYLVN
VEGYVGR
XXXYTGK
FLSYPVV
XXXYYGG
QFFYKXX
XXXYTSV
ALCYSIS
DTNYAKX
FLGYKXX
IISYAQG
XXFYSLW
XXXYSFS
ALIYRXX
XXXYAVA
TGPYGKX
IGLYKXX
GLDYHHP
TFQYTKX
IFIYTDV
SFVYVVS
VLLYNAK
MEQYRXX
XXWYTLL
DEBUGGING INFORMATION
Command line:
momo simple --oc results/momo10 --psm-type tide momo/small-tide-mod-1-out-of-2.txt momo/small-tide-mod-2-out-of-2.txt
PARAMETERS:
algorithm: simple
post-translationally modified peptide filenames:
file 1: momo/small-tide-mod-1-out-of-2.txt
file 2: momo/small-tide-mod-2-out-of-2.txt
PTM filetype: tide
modified peptide column: 'sequence'
motif width: 7
filter: false
remove unknowns: false
eliminate repeats: true
eliminate repeat width: 7
min occurrences: 5
single motif per mass: false
hash fasta: false
hash fasta width: 0
This information can be useful in the event you wish to report a
problem with the MoMo software.
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