MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)

For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html.
To get a copy of the MoMo software please access http://meme-suite.org.

If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017. [full text]

High-scoring Motif Occurences Debugging Information Results in TSV format Results in MEME format



Peptide Preprocessing



Results

  • motif: S fg_matches: 114
    sequence logo of motif


  • motif: T fg_matches: 90
    sequence logo of motif


  • motif: Y fg_matches: 48
    sequence logo of motif



  • DEBUGGING INFORMATION

    Command line:

    momo simple --oc results/momo9 --protein-database momo/small-yeast.fasta momo/small-tide-mod-phospho.fasta
    
    PARAMETERS:
    
    algorithm: simple
    post-translationally modified peptide filenames: 
    	file 1: momo/small-tide-mod-phospho.fasta
    PTM filetype: FASTA
    protein database filename: momo/small-yeast.fasta
    protein database format: FASTA
    motif width: 7
    filter: false
    remove unknowns: false
    eliminate repeats: true
    	eliminate repeat width: 7
    min occurrences: 5
    single motif per mass: false
    hash fasta: false
    	hash fasta width: 0
    
    
    

    This information can be useful in the event you wish to report a problem with the MoMo software.


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