MoMo version 5.0.1 (Release date: Wed Aug 22 15:26:53 2018 -0700)

For further information on how to interpret these results please access http://meme-suite.org/doc/momo-output-format.html.
To get a copy of the MoMo software please access http://meme-suite.org.

If you use MoMo in your research, please cite the following paper:
Alice Cheng, Charles Grant, Timothy L. Bailey and William Noble, "MoMo: Discovery of post-translational modification motifs", bioRxiv, preprint, 2017. [full text]

High-scoring Motif Occurences Debugging Information Results in TSV format Results in MEME format



Peptide Preprocessing



Results

  • motif: S79.9 fg_matches: 71
    sequence logo of motif


  • motif: T79.9 fg_matches: 47
    sequence logo of motif


  • motif: Y79.9 fg_matches: 29
    sequence logo of motif



  • DEBUGGING INFORMATION

    Command line:

    momo simple --oc results/momo7 --psm-type tide --filter 'xcorr rank,le,3' momo/small-tide-mod.txt
    
    PARAMETERS:
    
    algorithm: simple
    post-translationally modified peptide filenames: 
    	file 1: momo/small-tide-mod.txt
    PTM filetype: tide
    modified peptide column: 'sequence'
    motif width: 7
    filter: true
    	filter field: 'xcorr rank'
    	filter type: <=
    	filter threshold: 3
    remove unknowns: false
    eliminate repeats: true
    	eliminate repeat width: 7
    min occurrences: 5
    single motif per mass: false
    hash fasta: false
    	hash fasta width: 0
    
    
    

    This information can be useful in the event you wish to report a problem with the MoMo software.


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