elm2meme [options] <ELM file>+
Reads a tab separated quoted values file containing ELM regular expressions and convert them to MEME motifs where possible.
The names of one or more motif files in ELM format.
ELM entries describe a motif as a regular expression. Not all can be converted into MEME motifs due to anchors or variable length.
"Accession" "ELMIdentifier" "FunctionalSiteName" "Description" "Regex" "Probability" "#Instances" "#Instances_in_PDB" "ELME000321" "CLV_C14_Caspase3-7" "Caspase cleavage motif" "Caspase-3 and Caspase-7 cleavage site." "[DSTE][^P][^DEWHFYC]D[GSAN]" "0.00309374033071" "39" "0" "ELME000172" "CLV_MEL_PAP_1" "Melanisation activation site" "Prophenoloxidase-activating proteinase (PAP) cleavage site ([ILV]-X-X-R-|-[FV]-[GS]-X)." "[ILV]..R[VF][GS]." "0.000105375572148" "12" "0" "ELME000102" "CLV_NRD_NRD_1" "NRD cleavage site" "N-Arg dibasic convertase (NRD/Nardilysin) cleavage site (X-|-R-K or R-|-R-X)." "(.RK)|(RR[^KR])" "0.00746473248158" "2" "0" "ELME000101" "CLV_PCSK_FUR_1" "PCSK cleavage site" "Furin (PACE) cleavage site (R-X-[RK]-R-|-X)." "R.[RK]R." "0.000508722921034" "13" "0"
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General Options |