GLAM2SCAN

Version 1056

 glam2scan -O glam2scan_example_output_files p At.glam2 At.faa
 

If you use this program in your research, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey, "Discovering sequence motifs with arbitrary insertions and deletions", PLoS Computational Biology, 4(5):e1000071, 2008. [full text]

NAME START SITE END STRAND SCORE
At1g01140.1_4-2-4_SnRK3. 114 LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA 165 + 128.
At1g01140.2_SnRK3.12 114 LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA 165 + 128.
At1g01140.3_SnRK3.12 114 LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA 165 + 128.
At1g06390.1_4-5-4_ASK-io 166 MPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAK 219 + 120.
At1g06390.2_ASK-iota 166 MPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAK 219 + 120.
At1g03740.1_4-5-2 309 FTEPQVKCYMRQLLSGLEHCHSRGVLHRDIKGSNLLIDSKGVLKIADFGLAT 360 + 118.
At1g01540.1_1-6-3 249 LTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAK 303 + 118.
At1g01540.2_Putative 249 LTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAK 303 + 118.
At1g04440.1_3-1-1-1 100 FSLKTVLMLADQMINRVEYMHVKGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAK 154 + 110.
At1g01560.1_4-5-1_MPK11 138 LTDDHSRFFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLAR 189 + 108.
At1g03930.1_3-1-1-1_ADK1 100 LSLKTVLMLADQLINRVEFMHTRGFLHRDIKPDNFLMGLGRKANQVYIIDFGLGK 154 + 107.
At1g05100.1_4-4-1_MAPKKK 102 IDEARVVKYTRQILLGLEYIHNSKGIAHCDIKGSNVLVGENGEAKIADFGCAK 154 + 106.
At1g03920.1_4-2-6 232 LSEDEAKFYIAESVLAIESIHNRNYIHRDIKPDNLLLDRYGHLRLSDFGLCK 283 + 106.
At1g05700.1_1-8-1 653 LSWRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSR 707 + 103.
At1g02970.1_4-3-1 344 VSEREILVIMHQIAKALHFVHEKGIAHLDVKPDNIYIKNGVCKLGDFGCAT 394 + 103.
At1g04700.1_2-1-4-1_Raf1 867 LDRRKKLMITLDSAFGMEYLHMKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSR 922 + 103.
At1g04210.1_protein 899 VPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLDNQSANGEPIVKLCDFDRAV 957 + 91.1
At1g01450.1_2-1-1 121 LSLPVAVDLMLQIALGMEYLHSKRIYHGELNPSNILVKPRSNQSGDGYLLGKIFGFGLNS 180 + 83.9
At1g01740.1_1-16-1 149 MKWAMRLRVALYISEALEYCSNNGHTLYH.DLNAYRVLFDEECNPRLSTFGLMK 201 + 71.8
At1g04210.1_protein 943 NGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGLEVDIWSFGCLI 1013 + -35.4
At1g05700.1_1-8-1 290 LKPNQTRE.FDISINGVT.V.AAGFSPKYLQTNTFFLNPESQSKIA.FSLVR 337 + -40.5
At1g01540.1_1-6-3 218 VEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLT.WDIRM.NIILGMAKGLAYLHE.GLEP 274 + -41.1
At1g01540.2_Putative 218 VEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLT.WDIRM.NIILGMAKGLAYLHE.GLEP 274 + -41.1
At1g03740.1_4-5-2 138 LSSSMFSE.HHQIEKGVEKP.EVEASVRVVHRELKRGSSIVSPKDAERKQVAAGWPSWLVSVAGESLVD 204 + -42.1
At1g04210.1_protein 542 LPLDSREVILLDRAKD.EVLDAITLSARALV.ARLKKLNCLTPDVDQVSIDNLQVASF.LAL 600 + -42.1