Version 1056
glam2scan -O glam2scan_example_output_files p At.glam2 At.faa
If you use this program in your research, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey, "Discovering sequence motifs with arbitrary insertions and deletions", PLoS Computational Biology, 4(5):e1000071, 2008. [full text]
| NAME | START | SITE | END | STRAND | SCORE |
|---|---|---|---|---|---|
| At1g01140.1_4-2-4_SnRK3. | 114 | LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA | 165 | + | 128. |
| At1g01140.2_SnRK3.12 | 114 | LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA | 165 | + | 128. |
| At1g01140.3_SnRK3.12 | 114 | LKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSA | 165 | + | 128. |
| At1g06390.1_4-5-4_ASK-io | 166 | MPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAK | 219 | + | 120. |
| At1g06390.2_ASK-iota | 166 | MPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAK | 219 | + | 120. |
| At1g03740.1_4-5-2 | 309 | FTEPQVKCYMRQLLSGLEHCHSRGVLHRDIKGSNLLIDSKGVLKIADFGLAT | 360 | + | 118. |
| At1g01540.1_1-6-3 | 249 | LTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAK | 303 | + | 118. |
| At1g01540.2_Putative | 249 | LTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAK | 303 | + | 118. |
| At1g04440.1_3-1-1-1 | 100 | FSLKTVLMLADQMINRVEYMHVKGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAK | 154 | + | 110. |
| At1g01560.1_4-5-1_MPK11 | 138 | LTDDHSRFFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLAR | 189 | + | 108. |
| At1g03930.1_3-1-1-1_ADK1 | 100 | LSLKTVLMLADQLINRVEFMHTRGFLHRDIKPDNFLMGLGRKANQVYIIDFGLGK | 154 | + | 107. |
| At1g05100.1_4-4-1_MAPKKK | 102 | IDEARVVKYTRQILLGLEYIHNSKGIAHCDIKGSNVLVGENGEAKIADFGCAK | 154 | + | 106. |
| At1g03920.1_4-2-6 | 232 | LSEDEAKFYIAESVLAIESIHNRNYIHRDIKPDNLLLDRYGHLRLSDFGLCK | 283 | + | 106. |
| At1g05700.1_1-8-1 | 653 | LSWRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSR | 707 | + | 103. |
| At1g02970.1_4-3-1 | 344 | VSEREILVIMHQIAKALHFVHEKGIAHLDVKPDNIYIKNGVCKLGDFGCAT | 394 | + | 103. |
| At1g04700.1_2-1-4-1_Raf1 | 867 | LDRRKKLMITLDSAFGMEYLHMKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSR | 922 | + | 103. |
| At1g04210.1_protein | 899 | VPMDLALSIARDISGALMELHSKDIIHRDIKSENVLIDLDNQSANGEPIVKLCDFDRAV | 957 | + | 91.1 |
| At1g01450.1_2-1-1 | 121 | LSLPVAVDLMLQIALGMEYLHSKRIYHGELNPSNILVKPRSNQSGDGYLLGKIFGFGLNS | 180 | + | 83.9 |
| At1g01740.1_1-16-1 | 149 | MKWAMRLRVALYISEALEYCSNNGHTLYH.DLNAYRVLFDEECNPRLSTFGLMK | 201 | + | 71.8 |
| At1g04210.1_protein | 943 | NGEPIVKLCDFDRAVPLRSHLHGCCIAHVGIPPPNICVGTPRWMSPEVFRAMHEQNFYGLEVDIWSFGCLI | 1013 | + | -35.4 |
| At1g05700.1_1-8-1 | 290 | LKPNQTRE.FDISINGVT.V.AAGFSPKYLQTNTFFLNPESQSKIA.FSLVR | 337 | + | -40.5 |
| At1g01540.1_1-6-3 | 218 | VEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLT.WDIRM.NIILGMAKGLAYLHE.GLEP | 274 | + | -41.1 |
| At1g01540.2_Putative | 218 | VEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLT.WDIRM.NIILGMAKGLAYLHE.GLEP | 274 | + | -41.1 |
| At1g03740.1_4-5-2 | 138 | LSSSMFSE.HHQIEKGVEKP.EVEASVRVVHRELKRGSSIVSPKDAERKQVAAGWPSWLVSVAGESLVD | 204 | + | -42.1 |
| At1g04210.1_protein | 542 | LPLDSREVILLDRAKD.EVLDAITLSARALV.ARLKKLNCLTPDVDQVSIDNLQVASF.LAL | 600 | + | -42.1 |