The visual representation of the position weight matrix otherwise known as the motif logo.
The number of term predictions.
If specificity data is avaliable then this displays the top 5 specific predictions, otherwise it just displays the top 5 predictions.
A measure of the relative position in the GO hierarchy showing how specific a term is. A value of 100% implies that the GO term is the most specific form whereas a value of 0% implies that the GO term is one of the three roots of the Gene Ontology with only terms below it. A tilda (~) infront of the percentage implies that the value shown has been rounded and is not exact.
The Gene Ontology hierarchy and Gene Ontology name of the term. The hierarchy is specified by the abbreviations BP for biological process, CC for cellular component and MF for molecular function.
Gene name and rank of (up to) top 10 genes annotated with the GO term for the primary species.
For further information on how to interpret these results please access
https://meme-suite.org/meme/doc/gomo-output-format.html.
To get a copy of the MEME software please access
https://meme-suite.org.
| Motif | Logo | Predictions | Top 5 specific predictions |
|---|---|---|---|
| crp |  |
13 |
BP carbohydrate transport MF sugar transmembrane transporter activity BP cellular carbohydrate catabolic process MF intramolecular oxidoreductase activity, interconverting aldoses and ketoses BP cellular macromolecule catabolic process |
| nagC |  |
9 |
BP biofilm formation BP peptidoglycan biosynthetic process BP peptidoglycan-based cell wall organization MF hydrolase activity, hydrolyzing O-glycosyl compounds |
| narP |  |
14 |
BP anaerobic respiration MF molybdenum ion binding BP cytochrome complex assembly BP chemical homeostasis BP cellular homeostasis |
Motif crp |
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| GO term | score | p-value | q-value | Specificity | GO name | Gene ID / Rank (2518 genes in total) | |
|---|---|---|---|---|---|---|---|
| GO:0044248 | 1.341e-06 | 5.615e-07 | 4.550e-04 | ~1% | BP | cellular catabolic process | deoC (25), fucP (51), fucA (52), uxaC (64), exuT (65), tdcA (71), rhaB (83), araB (144), fruB (147), fruB (148), ...42 more... |
| GO:0009056 | 8.869e-07 | 5.615e-07 | 4.550e-04 | ~0% | BP | catabolic process | deoC (25), iraP (37), fucP (51), fucA (52), uxaC (64), exuT (65), tdcA (71), rhaB (83), araB (144), fruB (147), ...49 more... |
| GO:0008643 | 1.075e-04 | 7.299e-06 | 3.943e-03 | ~4% | BP | carbohydrate transport | fucP (51), malK (138), malE (139), ulaA (174), xylF (179), idnD (198), yjjL (824) |
| GO:0051119 | 2.285e-04 | 1.965e-05 | 6.673e-03 | ~5% | MF | sugar transmembrane transporter activity | fucP (51), glpT (99), malK (138), malE (139), xylF (179) |
| GO:0044275 | 2.652e-04 | 2.471e-05 | 6.673e-03 | ~7% | BP | cellular carbohydrate catabolic process | fucP (51), fucA (52), rhaB (83), araB (144), fruB (147), fruB (148), nagB (153), xylA (178), idnD (198), nanA (201), ...10 more... |
| GO:0015144 | 2.665e-04 | 2.471e-05 | 6.673e-03 | ~3% | MF | carbohydrate transmembrane transporter activity | fucP (51), glpT (99), malK (138), malE (139), ulaA (174), xylF (179), ycaI (1391) |
| GO:0016861 | 3.954e-04 | 4.436e-05 | 1.027e-02 | ~14% | MF | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | fucP (51), uxaC (64), rhaB (83), srlA (111), araB (144), nagB (153), xylA (178), hisL (641), yihU (858), rpiB (897), ...3 more... |
| GO:0016860 | 4.737e-04 | 5.559e-05 | 1.126e-02 | ~4% | MF | intramolecular oxidoreductase activity | fucP (51), uxaC (64), rhaB (83), srlA (111), araB (144), nagB (153), xylA (178), hisL (641), yihU (858), rpiB (897), ...4 more... |
| GO:0016052 | 5.421e-04 | 6.513e-05 | 1.147e-02 | ~3% | BP | carbohydrate catabolic process | fucP (51), fucA (52), rhaB (83), araB (144), fruB (147), fruB (148), nagB (153), ybjQ (158), xylA (178), idnD (198), ...14 more... |
| GO:0009057 | 5.850e-04 | 7.075e-05 | 1.147e-02 | ~2% | BP | macromolecule catabolic process | iraP (37), fucP (51), fucA (52), rhaB (83), araB (144), fruB (147), fruB (148), nagB (153), ybjQ (158), xylA (178), ...20 more... |
| GO:0016853 | 7.322e-04 | 9.770e-05 | 1.439e-02 | ~1% | MF | isomerase activity | fucP (51), uxaC (64), yqcC (77), rhaB (83), srlA (111), araB (144), nagB (153), xylA (178), nanA (201), nanC (239), ...27 more... |
| GO:0044265 | 8.893e-04 | 1.286e-04 | 1.737e-02 | ~6% | BP | cellular macromolecule catabolic process | fucP (51), fucA (52), rhaB (83), araB (144), fruB (147), fruB (148), nagB (153), xylA (178), idnD (198), nanA (201), ...13 more... |
| GO:0019321 | 1.272e-03 | 2.004e-04 | 2.499e-02 | ~16% | BP | pentose metabolic process | fucP (51), fucA (52), rhaB (83), araB (144), xylA (178), rbsD (364), aldA (1071), yiaK (1938) |
Motif nagC |
Previous Next Top |
| GO term | score | p-value | q-value | Specificity | GO name | Gene ID / Rank (2518 genes in total) | |
|---|---|---|---|---|---|---|---|
| GO:0051704 | 1.801e-04 | 1.797e-05 | 2.620e-02 | ~0% | BP | multi-organism process | srlA (79), solA (181), yjbE (305), bhsA (376), ymgC (387), dcuB (442), yihR (478), hlyE (536), ttdA (588), zwf (720), ...3 more... |
| GO:0042710 | 4.020e-04 | 5.278e-05 | 2.748e-02 | ~15% | BP | biofilm formation | srlA (79), solA (181), yjbE (305), bhsA (376), ymgC (387), dcuB (442), yihR (478), ttdA (588), ymgA (821), yjiP (889), ...1 more... |
| GO:0009252 | 8.308e-04 | 1.319e-04 | 2.748e-02 | ~89% | BP | peptidoglycan biosynthetic process | mltB (78), mltA (98), mipA (128), mraZ (166), zwf (720) |
| GO:0007047 | 8.308e-04 | 1.319e-04 | 2.748e-02 | ~37% | BP | cellular cell wall organization | mltB (78), mltA (98), mipA (128), mraZ (166), zwf (720) |
| GO:0031504 | 8.308e-04 | 1.319e-04 | 2.748e-02 | 100% | BP | peptidoglycan-based cell wall organization | mltB (78), mltA (98), mipA (128), mraZ (166), zwf (720) |
| GO:0009273 | 8.308e-04 | 1.319e-04 | 2.748e-02 | ~29% | BP | peptidoglycan-based cell wall biogenesis | mltB (78), mltA (98), mipA (128), mraZ (166), zwf (720) |
| GO:0042546 | 8.308e-04 | 1.319e-04 | 2.748e-02 | ~8% | BP | cell wall biogenesis | mltB (78), mltA (98), mipA (128), mraZ (166), zwf (720) |
| GO:0016798 | 1.101e-03 | 1.752e-04 | 2.838e-02 | ~1% | MF | hydrolase activity, acting on glycosyl bonds | chiA (11), uidA (95), mltA (98), essD (386) |
| GO:0004553 | 1.101e-03 | 1.752e-04 | 2.838e-02 | ~2% | MF | hydrolase activity, hydrolyzing O-glycosyl compounds | chiA (11), uidA (95), mltA (98), essD (386) |
Motif narP |
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| GO term | score | p-value | q-value | Specificity | GO name | Gene ID / Rank (2518 genes in total) | |
|---|---|---|---|---|---|---|---|
| GO:0009061 | 3.737e-04 | 3.650e-05 | 3.850e-02 | ~54% | BP | anaerobic respiration | fdnG (3), nirB (9), narG (21), frdA (25), dmsA (32), torC (228), lldP (715), narZ (798), zwf (2156), ...1 more... |
| GO:0045333 | 5.182e-04 | 5.334e-05 | 3.850e-02 | 15% | BP | cellular respiration | fdnG (3), nirB (9), narG (21), frdA (25), dmsA (32), torC (228), sdhC (672), lldP (715), narZ (798), cyoA (984), ...5 more... |
| GO:0030151 | 6.633e-04 | 7.524e-05 | 3.850e-02 | 100% | MF | molybdenum ion binding | fdnG (3), narG (21), dmsA (32), torC (228), narZ (798) |
| GO:0015980 | 9.717e-04 | 1.404e-04 | 3.850e-02 | ~6% | BP | energy derivation by oxidation of organic compounds | fdnG (3), nirB (9), narG (21), frdA (25), dmsA (32), torC (228), sdhC (672), lldP (715), narZ (798), cyoA (984), ...6 more... |
| GO:0006091 | 9.717e-04 | 1.404e-04 | 3.850e-02 | ~4% | BP | generation of precursor metabolites and energy | fdnG (3), nirB (9), narG (21), frdA (25), dmsA (32), torC (228), sdhC (672), lldP (715), narZ (798), cyoA (984), ...6 more... |
| GO:0017004 | 1.063e-03 | 1.567e-04 | 3.850e-02 | ~46% | BP | cytochrome complex assembly | napF (1), fdnG (3), narG (21), cydA (609), sdhC (672) |
| GO:0043623 | 1.063e-03 | 1.567e-04 | 3.850e-02 | ~9% | BP | cellular protein complex assembly | napF (1), fdnG (3), narG (21), cydA (609), sdhC (672) |
| GO:0042592 | 1.382e-03 | 2.212e-04 | 3.850e-02 | ~1% | BP | homeostatic process | aqpZ (28), nhaB (30), adiC (60), gadB (80), mscS (155), gadA (255), adiA (370), nhaA (532), kefA (565), mscL (821), ...3 more... |
| GO:0048878 | 1.382e-03 | 2.212e-04 | 3.850e-02 | ~2% | BP | chemical homeostasis | aqpZ (28), nhaB (30), adiC (60), gadB (80), mscS (155), gadA (255), adiA (370), nhaA (532), kefA (565), mscL (821), ...3 more... |
| GO:0019725 | 1.382e-03 | 2.212e-04 | 3.850e-02 | ~4% | BP | cellular homeostasis | aqpZ (28), nhaB (30), adiC (60), gadB (80), mscS (155), gadA (255), adiA (370), nhaA (532), kefA (565), mscL (821), ...3 more... |
| GO:0009055 | 1.539e-03 | 2.560e-04 | 4.051e-02 | ~13% | MF | electron carrier activity | fdnG (3), narG (21), frdA (25), dmsA (32), torC (228), cydA (609), sdhC (672), narZ (798), cyoA (984), ndh (1013), ...4 more... |
| GO:0065007 | 1.695e-03 | 2.835e-04 | 4.112e-02 | ~0% | BP | biological regulation | napF (1), aqpZ (28), nhaB (30), adiC (60), gadB (80), acnA (106), lptA (147), mscS (155), sohA (224), alaS (236), ...36 more... |
| GO:0065008 | 1.839e-03 | 3.111e-04 | 4.164e-02 | ~0% | BP | regulation of biological quality | aqpZ (28), nhaB (30), adiC (60), gadB (80), mscS (155), sohA (224), gadA (255), adiA (370), nhaA (532), kefA (565), ...5 more... |
| GO:0043169 | 2.049e-03 | 3.672e-04 | 4.564e-02 | ~9% | MF | cation binding | fdnG (3), nirB (9), narG (21), dmsA (32), uxaC (172), torC (228), alaS (236), nagB (246), yfdR (378), fucA (510), ...16 more... |