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MEME - Motif discovery tool
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MEME version 5.5.6 (Release date: Wed Jun 19 13:59:04 2024 -0700)
For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.
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REFERENCE
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If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
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PRIMARY SEQUENCES= lex0.fna
CONTROL SEQUENCES= --none--
ALPHABET= ACGT
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
cloacin-df13 1.0000 200 colicin-e1 1.0000 200
colicin-ia 1.0000 200 colicin-ib 1.0000 200
reca 1.0000 200 recn 1.0000 200
sula 1.0000 200 umu-operon 1.0000 200
uvra 1.0000 200 uvrb 1.0000 200
uvrd 1.0000 200 colicin-a 1.0000 136
lexA 1.0000 173 muc-operon 1.0000 158
hima 1.0000 200 uvrc 1.0000 200
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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme lex0.fna -oc meme_example_output_files -p 1 -dna -mod zoops -nmotifs 3 -revcomp
model: mod= zoops nmotifs= 3 evt= inf
objective function: em= E-value of product of p-values
starts= E-value of product of p-values
strands: + -
width: minw= 8 maxw= 50
nsites: minsites= 2 maxsites= 16 wnsites= 0.8
theta: spmap= uni spfuzz= 0.5
em: prior= dirichlet b= 0.01 maxiter= 50
distance= 1e-05
trim: wg= 11 ws= 1 endgaps= yes
data: n= 3067 N= 16
sample: seed= 0 hsfrac= 0
searchsize= 3067 norand= no csites= 1000
Letter frequencies in dataset:
A 0.29 C 0.21 G 0.21 T 0.29
Background letter frequencies (from file dataset with add-one prior applied):
A 0.29 C 0.21 G 0.21 T 0.29
Background model order: 0
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MOTIF TACTGTATATAHAHMCAG MEME-1 width = 18 sites = 14 llr = 241 E-value = 3.7e-033
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Motif TACTGTATATAHAHMCAG MEME-1 Description
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Simplified A 19::::a:9264a45:a:
pos.-specific C ::a::::1::13:34a::
probability G :1::a1::1:2::::::8
matrix T 91:a:9:9:814:41::2
bits 2.3 * * *
2.0 * * *
1.8 *** * * **
1.6 *** * * **
Relative 1.4 ******* * ***
Entropy 1.1 ********** * ***
(24.8 bits) 0.9 ********** * ***
0.7 ********** * ****
0.5 ******************
0.2 ******************
0.0 ------------------
Multilevel TACTGTATATAAAAACAG
consensus AGT TC T
sequence C C
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Motif TACTGTATATAHAHMCAG MEME-1 sites sorted by position p-value
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Sequence name Strand Start P-value Site
------------- ------ ----- --------- ------------------
recn + 71 5.09e-10 ccagcctctt tactgtatataaaaccag tttatactgt
cloacin-df13 - 99 5.09e-10 AAAACCAAAA TACTGTATATATACACAG TATGATTATT
umu-operon + 91 7.40e-10 aagaacagac tactgtatataaaaacag tataacttca
muc-operon + 49 2.05e-09 ataacagcga tactgtataaataaacag ttatttggaa
colicin-a + 34 2.72e-09 agtatcattt tactgtatataaacacat gtgaatatat
lexA + 76 3.08e-09 ctcacagcat aactgtatatacacccag ggggcggaat
colicin-e1 + 97 6.71e-09 gtagctttta tgctgtatataaaaccag tggttatatg
colicin-ib + 99 8.17e-09 aataaattag tactgtatatgtatccat atacgtaagc
colicin-ia + 99 8.17e-09 aataaattaa tactgtatatgtatccat atgcgtaagc
uvrb - 73 2.22e-08 CAACAAATTA TACTGGATAAAAAAACAG TTCATCACCA
sula + 85 3.31e-08 tcactggatg tactgtacatccatacag taactcacag
uvra + 60 3.54e-08 tgcattccaa tactgtatattcattcag gtcaatttgt
uvrd + 102 3.74e-08 taatcagcaa atctgtatatatacccag ctttttggcg
reca + 71 3.74e-08 aaacacttga tactgtatgagcatacag tataattgct
--------------------------------------------------------------------------------
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Motif TACTGTATATAHAHMCAG MEME-1 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
recn 5.1e-10 70_[+1]_112
cloacin-df13 5.1e-10 98_[-1]_84
umu-operon 7.4e-10 90_[+1]_92
muc-operon 2e-09 48_[+1]_92
colicin-a 2.7e-09 33_[+1]_85
lexA 3.1e-09 75_[+1]_80
colicin-e1 6.7e-09 96_[+1]_86
colicin-ib 8.2e-09 98_[+1]_84
colicin-ia 8.2e-09 98_[+1]_84
uvrb 2.2e-08 72_[-1]_110
sula 3.3e-08 84_[+1]_98
uvra 3.5e-08 59_[+1]_123
uvrd 3.7e-08 101_[+1]_81
reca 3.7e-08 70_[+1]_112
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Motif TACTGTATATAHAHMCAG MEME-1 in BLOCKS format
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BL MOTIF TACTGTATATAHAHMCAG width=18 seqs=14
recn ( 71) TACTGTATATAAAACCAG 1
cloacin-df13 ( 99) TACTGTATATATACACAG 1
umu-operon ( 91) TACTGTATATAAAAACAG 1
muc-operon ( 49) TACTGTATAAATAAACAG 1
colicin-a ( 34) TACTGTATATAAACACAT 1
lexA ( 76) AACTGTATATACACCCAG 1
colicin-e1 ( 97) TGCTGTATATAAAACCAG 1
colicin-ib ( 99) TACTGTATATGTATCCAT 1
colicin-ia ( 99) TACTGTATATGTATCCAT 1
uvrb ( 73) TACTGGATAAAAAAACAG 1
sula ( 85) TACTGTACATCCATACAG 1
uvra ( 60) TACTGTATATTCATTCAG 1
uvrd ( 102) ATCTGTATATATACCCAG 1
reca ( 71) TACTGTATGAGCATACAG 1
//
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Motif TACTGTATATAHAHMCAG MEME-1 position-specific scoring matrix
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log-odds matrix: alength= 4 w= 18 n= 2795 bayes= 8.86057 E= 3.7e-033
-102 -1045 -1045 156
156 -1045 -156 -202
-1045 225 -1045 -1045
-1045 -1045 -1045 179
-1045 -1045 225 -1045
-1045 -1045 -156 168
179 -1045 -1045 -1045
-1045 -156 -1045 168
168 -1045 -156 -1045
-44 -1045 -1045 144
115 -156 3 -202
30 44 -1045 30
179 -1045 -1045 -1045
30 44 -1045 30
79 103 -1045 -202
-1045 225 -1045 -1045
179 -1045 -1045 -1045
-1045 -1045 190 -44
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Motif TACTGTATATAHAHMCAG MEME-1 position-specific probability matrix
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letter-probability matrix: alength= 4 w= 18 nsites= 14 E= 3.7e-033
0.142857 0.000000 0.000000 0.857143
0.857143 0.000000 0.071429 0.071429
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.071429 0.928571
1.000000 0.000000 0.000000 0.000000
0.000000 0.071429 0.000000 0.928571
0.928571 0.000000 0.071429 0.000000
0.214286 0.000000 0.000000 0.785714
0.642857 0.071429 0.214286 0.071429
0.357143 0.285714 0.000000 0.357143
1.000000 0.000000 0.000000 0.000000
0.357143 0.285714 0.000000 0.357143
0.500000 0.428571 0.000000 0.071429
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.785714 0.214286
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Motif TACTGTATATAHAHMCAG MEME-1 regular expression
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TACTGTATA[TA][AG][ATC]A[ATC][AC]CA[GT]
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Time 0.86 secs.
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MOTIF TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 width = 45 sites = 4 llr = 169 E-value = 7.1e-003
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 Description
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Simplified A :::::33835::8:3885:53535::5585:::::a::3:::a3:
pos.-specific C :::a8:8:::::3::3:::53:338a:::::5a:::8883:5:83
probability G ::5:33:385a5::8:35a:5::33:53::a:::a::3::a:::8
matrix T aa5::5:::::5:a:::::::55::::335:5:a::3::8:5:::
bits 2.3 * * * * * * * *
2.0 * * * * * * * *
1.8 ** * * * * * * **** * *
1.6 ** * * * * * * **** * *
Relative 1.4 ** ** * * * ** * ** * ******* * ***
Entropy 1.1 ***** ************** *** ***************
(60.9 bits) 0.9 ***** ************** *** * ***************
0.7 ***** **************** *** *****************
0.5 *********************************************
0.2 *********************************************
0.0 ---------------------------------------------
Multilevel TTGCCTCAGAGGATGAAAGAGATACCAAAAGCCTGACCCTGCACG
consensus T GAAGAG TC ACGG CATACG GGTT T TGAC T AC
sequence G C CG T
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 sites sorted by position p-value
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Sequence name Strand Start P-value Site
------------- ------ ----- --------- ---------------------------------------------
colicin-ib + 142 1.19e-24 attcatttgt tttcctcagaggatgaaggagataccgaatgtctgaccctgtacg tattacaaat
colicin-ia + 142 1.19e-24 attcatttgt tttcctcagaggatgaaggagataccgaatgtctgaccctgtacg tattacaaat
hima + 36 2.60e-18 ggtaagggtg ttgcggaggggtataagagcctcgccataagcctgatcctgcaag ataccagccg
reca - 5 7.37e-18 GTAGAAATTG TTGCCACAAGGTCTGCAAGCATACGCAGTAGCCTGACGACGCACC GCAT
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
colicin-ib 1.2e-24 141_[+2]_14
colicin-ia 1.2e-24 141_[+2]_14
hima 2.6e-18 35_[+2]_120
reca 7.4e-18 4_[-2]_151
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 in BLOCKS format
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BL MOTIF TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG width=45 seqs=4
colicin-ib ( 142) TTTCCTCAGAGGATGAAGGAGATACCGAATGTCTGACCCTGTACG 1
colicin-ia ( 142) TTTCCTCAGAGGATGAAGGAGATACCGAATGTCTGACCCTGTACG 1
hima ( 36) TTGCGGAGGGGTATAAGAGCCTCGCCATAAGCCTGATCCTGCAAG 1
reca ( 5) TTGCCACAAGGTCTGCAAGCATACGCAGTAGCCTGACGACGCACC 1
//
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 position-specific scoring matrix
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log-odds matrix: alength= 4 w= 45 n= 2363 bayes= 9.9419 E= 7.1e-003
-865 -865 -865 178
-865 -865 -865 178
-865 -865 125 79
-865 225 -865 -865
-865 183 25 -865
-21 -865 25 79
-21 183 -865 -865
137 -865 25 -865
-21 -865 183 -865
79 -865 125 -865
-865 -865 225 -865
-865 -865 125 79
137 25 -865 -865
-865 -865 -865 178
-21 -865 183 -865
137 25 -865 -865
137 -865 25 -865
79 -865 125 -865
-865 -865 225 -865
79 125 -865 -865
-21 25 125 -865
79 -865 -865 79
-21 25 -865 79
79 25 25 -865
-865 183 25 -865
-865 225 -865 -865
79 -865 125 -865
79 -865 25 -21
137 -865 -865 -21
79 -865 -865 79
-865 -865 225 -865
-865 125 -865 79
-865 225 -865 -865
-865 -865 -865 178
-865 -865 225 -865
178 -865 -865 -865
-865 183 -865 -21
-865 183 25 -865
-21 183 -865 -865
-865 25 -865 137
-865 -865 225 -865
-865 125 -865 79
178 -865 -865 -865
-21 183 -865 -865
-865 25 183 -865
--------------------------------------------------------------------------------
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 position-specific probability matrix
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letter-probability matrix: alength= 4 w= 45 nsites= 4 E= 7.1e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.500000 0.500000
0.000000 1.000000 0.000000 0.000000
0.000000 0.750000 0.250000 0.000000
0.250000 0.000000 0.250000 0.500000
0.250000 0.750000 0.000000 0.000000
0.750000 0.000000 0.250000 0.000000
0.250000 0.000000 0.750000 0.000000
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.500000 0.500000
0.750000 0.250000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.250000 0.000000 0.750000 0.000000
0.750000 0.250000 0.000000 0.000000
0.750000 0.000000 0.250000 0.000000
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 1.000000 0.000000
0.500000 0.500000 0.000000 0.000000
0.250000 0.250000 0.500000 0.000000
0.500000 0.000000 0.000000 0.500000
0.250000 0.250000 0.000000 0.500000
0.500000 0.250000 0.250000 0.000000
0.000000 0.750000 0.250000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.000000 0.500000 0.000000
0.500000 0.000000 0.250000 0.250000
0.750000 0.000000 0.000000 0.250000
0.500000 0.000000 0.000000 0.500000
0.000000 0.000000 1.000000 0.000000
0.000000 0.500000 0.000000 0.500000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.750000 0.000000 0.250000
0.000000 0.750000 0.250000 0.000000
0.250000 0.750000 0.000000 0.000000
0.000000 0.250000 0.000000 0.750000
0.000000 0.000000 1.000000 0.000000
0.000000 0.500000 0.000000 0.500000
1.000000 0.000000 0.000000 0.000000
0.250000 0.750000 0.000000 0.000000
0.000000 0.250000 0.750000 0.000000
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Motif TTKCCDCAGRGKATGAARGMVWHVCCRDAWGYCTGACCCTGYACG MEME-2 regular expression
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TT[GT]C[CG][TAG][CA][AG][GA][AG]G[GT][AC]T[GA][AC][AG][AG]G[AC][GAC][AT][TAC][ACG][CG]C[AG][AGT][AT][AT]G[CT]CTGA[CT][CG][CA][TC]G[CT]A[CA][GC]
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Time 1.66 secs.
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MOTIF YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 width = 40 sites = 6 llr = 166 E-value = 7.4e+000
********************************************************************************
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Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 Description
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Simplified A :22:3::::552:8:3a:3a:2a3272:777252::8:8:
pos.-specific C 7::52235::32::22::5:82:252:5::3:3::2:a:3
probability G ::25227::522a2:5:3::22::2222:2:2::272:2:
matrix T 387:37:5a::5::8::72::5:52:7332:72882:::7
bits 2.3 * *
2.0 * *
1.8 * * * * * *
1.6 * * * ** * *
Relative 1.4 * * * * * ** * *
Entropy 1.1 ** * **** *** ** ** * * ** ****
(40.0 bits) 0.9 ** * **** *** ** ** * * * *******
0.7 **** ***** ****** ** * ******* *******
0.5 **** ****** ********* ** ***************
0.2 **** ***********************************
0.0 ----------------------------------------
Multilevel CTTCATGCTAATGATGATCACTATCATCAAATATTGACAT
consensus T GT CT GC A GA A TT C C C
sequence
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Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 sites sorted by position p-value
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Sequence name Strand Start P-value Site
------------- ------ ----- --------- ----------------------------------------
colicin-ia + 35 1.64e-20 tgtaacatca cttcatgttaatgataatcactatcatcaaatcttgacat gccattttct
colicin-ib + 35 6.80e-18 tataacacca cttcatgttaatgataattactatcattaaatcttgacat gccattttct
cloacin-df13 + 27 1.22e-13 cgggcgcttt tttgtgcctgaagatgagaactaatctcatatattgacac ctgaaaactg
uvra - 86 4.09e-12 TGCCCGGTGG CATGGTGCTACCGGCGATCACAAACGGTTAATTATGACAC AAATTGACCT
sula - 143 8.36e-12 ACGCGCAATT TTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCAT AGCCTGAAGT
uvrc - 76 8.73e-12 CATTGACCTT CTGGCCCTTGGTGATCATCAGCATAATCTGCAATTCACGT TCAGACAAAC
--------------------------------------------------------------------------------
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Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
colicin-ia 1.6e-20 34_[+3]_126
colicin-ib 6.8e-18 34_[+3]_126
cloacin-df13 1.2e-13 26_[+3]_134
uvra 4.1e-12 85_[-3]_75
sula 8.4e-12 142_[-3]_18
uvrc 8.7e-12 75_[-3]_85
--------------------------------------------------------------------------------
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Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 in BLOCKS format
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BL MOTIF YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY width=40 seqs=6
colicin-ia ( 35) CTTCATGTTAATGATAATCACTATCATCAAATCTTGACAT 1
colicin-ib ( 35) CTTCATGTTAATGATAATTACTATCATTAAATCTTGACAT 1
cloacin-df13 ( 27) TTTGTGCCTGAAGATGAGAACTAATCTCATATATTGACAC 1
uvra ( 86) CATGGTGCTACCGGCGATCACAAACGGTTAATTATGACAC 1
sula ( 143) TTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCAT 1
uvrc ( 76) CTGGCCCTTGGTGATCATCAGCATAATCTGCAATTCACGT 1
//
--------------------------------------------------------------------------------
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Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 position-specific scoring matrix
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log-odds matrix: alength= 4 w= 40 n= 2443 bayes= 8.32394 E= 7.4e+000
-923 166 -923 20
-80 -923 -923 152
-80 -923 -33 120
-923 125 125 -923
20 -33 -33 20
-923 -33 -33 120
-923 66 166 -923
-923 125 -923 79
-923 -923 -923 179
79 -923 125 -923
79 66 -33 -923
-80 -33 -33 79
-923 -923 225 -923
152 -923 -33 -923
-923 -33 -923 152
20 -33 125 -923
179 -923 -923 -923
-923 -923 66 120
20 125 -923 -80
179 -923 -923 -923
-923 199 -33 -923
-80 -33 -33 79
179 -923 -923 -923
20 -33 -923 79
-80 125 -33 -80
120 -33 -33 -923
-80 -923 -33 120
-923 125 -33 20
120 -923 -923 20
120 -923 -33 -80
120 66 -923 -923
-80 -923 -33 120
79 66 -923 -80
-80 -923 -923 152
-923 -923 -33 152
-923 -33 166 -80
152 -923 -33 -923
-923 225 -923 -923
152 -923 -33 -923
-923 66 -923 120
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 40 nsites= 6 E= 7.4e+000
0.000000 0.666667 0.000000 0.333333
0.166667 0.000000 0.000000 0.833333
0.166667 0.000000 0.166667 0.666667
0.000000 0.500000 0.500000 0.000000
0.333333 0.166667 0.166667 0.333333
0.000000 0.166667 0.166667 0.666667
0.000000 0.333333 0.666667 0.000000
0.000000 0.500000 0.000000 0.500000
0.000000 0.000000 0.000000 1.000000
0.500000 0.000000 0.500000 0.000000
0.500000 0.333333 0.166667 0.000000
0.166667 0.166667 0.166667 0.500000
0.000000 0.000000 1.000000 0.000000
0.833333 0.000000 0.166667 0.000000
0.000000 0.166667 0.000000 0.833333
0.333333 0.166667 0.500000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.333333 0.666667
0.333333 0.500000 0.000000 0.166667
1.000000 0.000000 0.000000 0.000000
0.000000 0.833333 0.166667 0.000000
0.166667 0.166667 0.166667 0.500000
1.000000 0.000000 0.000000 0.000000
0.333333 0.166667 0.000000 0.500000
0.166667 0.500000 0.166667 0.166667
0.666667 0.166667 0.166667 0.000000
0.166667 0.000000 0.166667 0.666667
0.000000 0.500000 0.166667 0.333333
0.666667 0.000000 0.000000 0.333333
0.666667 0.000000 0.166667 0.166667
0.666667 0.333333 0.000000 0.000000
0.166667 0.000000 0.166667 0.666667
0.500000 0.333333 0.000000 0.166667
0.166667 0.000000 0.000000 0.833333
0.000000 0.000000 0.166667 0.833333
0.000000 0.166667 0.666667 0.166667
0.833333 0.000000 0.166667 0.000000
0.000000 1.000000 0.000000 0.000000
0.833333 0.000000 0.166667 0.000000
0.000000 0.333333 0.000000 0.666667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif YTTSNTSYTRMTGATRAKMACTAWCATYWAMTMTTGACAY MEME-3 regular expression
--------------------------------------------------------------------------------
[CT]TT[CG][AT]T[GC][CT]T[AG][AC]TGAT[GA]A[TG][CA]ACTA[TA]CAT[CT][AT]A[AC]T[AC]TTGACA[TC]
--------------------------------------------------------------------------------
Time 2.41 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cloacin-df13 2.14e-15 26_[+3(1.22e-13)]_32_[-1(5.09e-10)]_\
84
colicin-e1 1.31e-05 96_[+1(6.71e-09)]_86
colicin-ia 3.11e-41 34_[+3(1.64e-20)]_24_[+1(8.17e-09)]_\
25_[+2(1.19e-24)]_14
colicin-ib 1.14e-38 34_[+3(6.80e-18)]_24_[+1(8.17e-09)]_\
25_[+2(1.19e-24)]_14
reca 1.43e-17 4_[-2(7.37e-18)]_21_[+1(3.74e-08)]_\
112
recn 1.28e-06 70_[+1(5.09e-10)]_4_[+1(1.41e-05)]_\
2_[-1(2.23e-06)]_70
sula 4.56e-12 84_[+1(3.31e-08)]_40_[-3(8.36e-12)]_\
18
umu-operon 4.95e-06 90_[+1(7.40e-10)]_92
uvra 3.02e-12 59_[+1(3.54e-08)]_8_[-3(4.09e-12)]_\
75
uvrb 4.75e-05 72_[-1(2.22e-08)]_110
uvrd 3.06e-04 101_[+1(3.74e-08)]_81
colicin-a 2.46e-05 33_[+1(2.72e-09)]_85
lexA 5.19e-06 15_[-1(5.87e-06)]_21_[+1(5.56e-07)]_\
3_[+1(3.08e-09)]_80
muc-operon 2.97e-05 48_[+1(2.05e-09)]_92
hima 1.95e-13 35_[+2(2.60e-18)]_120
uvrc 9.70e-08 75_[-3(8.73e-12)]_85
--------------------------------------------------------------------------------
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Stopped because requested number of motifs (3) found.
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CPU: Timothys-iMac.local
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