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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.6 (Release date: Wed Jun 19 13:59:04 2024 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.248 C 0.252 G 0.252 T 0.248 

MOTIF 1-RCCACACCCWD STREME-1
letter-probability matrix: alength= 4 w= 11 nsites= 262 E= 3.8e-006
 0.366786 0.030294 0.585545 0.017376
 0.081964 0.793562 0.070863 0.053611
 0.013067 0.896927 0.000156 0.089849
 0.732377 0.254399 0.013070 0.000154
 0.000154 0.999535 0.000156 0.000154
 0.748030 0.000156 0.251659 0.000154
 0.000154 0.999535 0.000156 0.000154
 0.000154 0.999535 0.000156 0.000154
 0.000154 0.982313 0.000156 0.017376
 0.533263 0.059084 0.000156 0.407497
 0.230278 0.145776 0.340838 0.283108

MOTIF 2-ACWGATAAS STREME-2
letter-probability matrix: alength= 4 w= 9 nsites= 278 E= 3.4e-002
 0.525002 0.190881 0.078308 0.205809
 0.184886 0.457866 0.136828 0.220419
 0.347390 0.019632 0.002290 0.630688
 0.027685 0.000184 0.971949 0.000182
 0.935416 0.051955 0.012447 0.000182
 0.022198 0.005263 0.000184 0.972354
 0.981675 0.000184 0.007802 0.010339
 0.873224 0.000184 0.096800 0.029791
 0.175890 0.283181 0.419011 0.121918

MOTIF 3-CCCCKCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 1.9e-001
 0.000878 0.772803 0.025406 0.200913
 0.165125 0.791937 0.000890 0.042047
 0.025394 0.938154 0.035574 0.000878
 0.000878 0.972837 0.025406 0.000878
 0.000878 0.000890 0.640245 0.357987
 0.000878 0.972837 0.025406 0.000878
 0.000878 0.985095 0.013148 0.000878
 0.025394 0.931668 0.000890 0.042047

MOTIF 4-CTGGGGAGA STREME-4
letter-probability matrix: alength= 4 w= 9 nsites= 31 E= 5.6e+000
 0.033692 0.936984 0.014670 0.014654
 0.001165 0.001181 0.066266 0.931388
 0.033692 0.033708 0.917947 0.014654
 0.001165 0.001181 0.996489 0.001165
 0.001165 0.033708 0.801008 0.164119
 0.033692 0.001181 0.909342 0.055785
 0.866271 0.033708 0.001181 0.098841
 0.018730 0.055801 0.924303 0.001165
 0.917899 0.066266 0.001181 0.014654

MOTIF 5-AAACGCCCW STREME-5
letter-probability matrix: alength= 4 w= 9 nsites= 24 E= 6.0e+000
 0.693041 0.131085 0.174329 0.001546
 0.995320 0.001567 0.001567 0.001546
 0.779250 0.217636 0.001567 0.001546
 0.001546 0.995341 0.001567 0.001546
 0.001546 0.001567 0.995341 0.001546
 0.001546 0.952182 0.044726 0.001546
 0.001546 0.952182 0.001567 0.044704
 0.001546 0.995341 0.001567 0.001546
 0.477100 0.087905 0.001567 0.433428

MOTIF 6-AACAAGGAAARA STREME-6
letter-probability matrix: alength= 4 w= 12 nsites= 20 E= 6.0e+000
 0.814477 0.001640 0.182265 0.001618
 0.769321 0.046796 0.182265 0.001618
 0.046774 0.949969 0.001640 0.001618
 0.904790 0.046796 0.046796 0.001618
 0.814477 0.046796 0.001640 0.137087
 0.091930 0.046796 0.769343 0.091930
 0.046774 0.137109 0.769343 0.046774
 0.724165 0.137109 0.046796 0.091930
 0.904790 0.001640 0.001640 0.091930
 0.679008 0.001640 0.046796 0.272556
 0.453226 0.001640 0.408047 0.137087
 0.859634 0.091953 0.046796 0.001618

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc memechip_example_output_files/streme_out -dna --seed 0 --p memechip_example_output_files/seqs-centered --minw 6 --maxw 15 --order 2
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CPU:		Timothys-iMac.local
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FINALTIME:	32.59 seconds
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