******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.6 (Release date: Wed Jun 19 13:59:04 2024 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= nrmix.nseqs.100.100bp.seed.1.fa CONTROL SEQUENCES= --none-- ALPHABET= ACGT ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc xstreme_example_output_files/meme_out -mod zoops -minw 6 -maxw 15 -bfile xstreme_example_output_files/background -markov_order 2 -seed 0 -dna -revcomp -evt 0.05 -p 8 -nostatus nrmix.nseqs.100.100bp.seed.1.fa model: mod= zoops nmotifs= 1000 evt= 0.05 objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + - width: minw= 6 maxw= 15 nsites: minsites= 2 maxsites= 2100 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 210000 N= 2100 sample: seed= 0 hsfrac= 0 searchsize= 100000 norand= no csites= 1000 Letter frequencies in dataset: A 0.222 C 0.278 G 0.278 T 0.222 Background letter frequencies (from file xstreme_example_output_files/background): A 0.222 C 0.278 G 0.278 T 0.222 Background model order: 2 ******************************************************************************** ******************************************************************************** MOTIF TTTTYTTTTYTTTYW MEME-1 width = 15 sites = 154 llr = 1662 E-value = 2.7e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTYTTTTYTTTYW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1311::211::::3 pos.-specific C 2::13:1233:::42 probability G :1:21:1111:3:2: matrix T 87764a9564a7a45 bits 2.2 * 2.0 * * * 1.7 * * * 1.5 * ** * * Relative 1.3 * * ** * * Entropy 1.1 *** ** *** (15.6 bits) 0.9 *** ** *** 0.7 **** ** * *** * 0.4 **** **** ***** 0.2 *************** 0.0 --------------- Multilevel TTTTTTTTTTTTTCT consensus A C ACC G TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYTTTTYTTTYW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 11.6444 E= 2.7e-059 -509 -78 -1391 191 -92 -1391 -103 175 23 -542 -1391 173 -119 -142 -67 149 -164 28 -90 99 -277 -1391 -1391 212 -1391 -210 -225 198 -5 -78 -133 121 -209 -6 -210 148 -85 31 -151 97 -1391 -1391 -1391 217 -1391 -310 7 161 -1391 -1391 -383 214 -509 62 -61 79 63 -67 -1391 111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYTTTTYTTTYW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 154 E= 2.7e-059 0.006494 0.162338 0.000000 0.831169 0.116883 0.000000 0.136364 0.746753 0.259740 0.006494 0.000000 0.733766 0.097403 0.103896 0.175325 0.623377 0.071429 0.337662 0.149351 0.441558 0.032468 0.000000 0.000000 0.967532 0.000000 0.064935 0.058442 0.876623 0.214286 0.162338 0.110390 0.512987 0.051948 0.266234 0.064935 0.616883 0.123377 0.344156 0.097403 0.435065 0.000000 0.000000 0.000000 1.000000 0.000000 0.032468 0.292208 0.675325 0.000000 0.000000 0.019481 0.980519 0.006494 0.428571 0.181818 0.383117 0.344156 0.175325 0.000000 0.480519 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYTTTTYTTTYW MEME-1 regular expression -------------------------------------------------------------------------------- TT[TA]T[TC]TT[TA][TC][TC]T[TG]T[CT][TA] -------------------------------------------------------------------------------- Time 300.20 secs. ******************************************************************************** ******************************************************************************** MOTIF VATGACTCAG MEME-2 width = 10 sites = 210 llr = 2135 E-value = 3.5e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif VATGACTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 26::a:::a: pos.-specific C 21:::8:a:1 probability G 43:a:2:::7 matrix T 2:a:::a::2 bits 2.2 * * * * 2.0 * * * * 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (14.7 bits) 0.9 ******** 0.7 ********* 0.4 ********* 0.2 ********* 0.0 ---------- Multilevel GATGACTCAG consensus CG G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VATGACTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 191100 bayes= 12.0454 E= 3.5e-062 -2 -17 38 -37 152 -217 11 -1436 -1436 -1436 -1436 217 -1436 -1436 183 -396 217 -1436 -1436 -1436 -554 146 -48 -296 -1436 -1436 -1436 217 -354 182 -1436 -1436 217 -1436 -1436 -1436 -322 -170 138 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VATGACTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 210 E= 3.5e-062 0.219048 0.247619 0.361905 0.171429 0.638095 0.061905 0.300000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.985714 0.014286 1.000000 0.000000 0.000000 0.000000 0.004762 0.766667 0.200000 0.028571 0.000000 0.000000 0.000000 1.000000 0.019048 0.980952 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.023810 0.085714 0.723810 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VATGACTCAG MEME-2 regular expression -------------------------------------------------------------------------------- [GCA][AG]TGA[CG]TCAG -------------------------------------------------------------------------------- Time 571.18 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCCCGCCCCC MEME-3 width = 11 sites = 324 llr = 2905 E-value = 1.3e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCCCGCCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 11:1:2::::: pos.-specific C 3789a:aa898 probability G 5:1::6::::1 matrix T 121::2::211 bits 2.2 2.0 * * 1.7 * * 1.5 ** ** Relative 1.3 ** ** * Entropy 1.1 *** **** (12.9 bits) 0.9 **** ***** 0.7 ********** 0.4 ********** 0.2 *********** 0.0 ----------- Multilevel GCCCCGCCCCC consensus CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCGCCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 11.2494 E= 1.3e-045 -178 3 86 -61 -208 140 -1498 -6 -1498 152 -217 -68 -192 175 -1498 -616 -1498 185 -1498 -1498 -33 -1498 121 -29 -1498 179 -291 -1498 -1498 185 -1498 -1498 -1498 144 -1498 15 -271 169 -1498 -171 -1498 146 -154 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCGCCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 324 E= 1.3e-045 0.064815 0.283951 0.506173 0.145062 0.052469 0.734568 0.000000 0.212963 0.000000 0.799383 0.061728 0.138889 0.058642 0.938272 0.000000 0.003086 0.000000 1.000000 0.000000 0.000000 0.175926 0.000000 0.641975 0.182099 0.000000 0.962963 0.037037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.753086 0.000000 0.246914 0.033951 0.898148 0.000000 0.067901 0.000000 0.765432 0.095679 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCGCCCCC MEME-3 regular expression -------------------------------------------------------------------------------- [GC][CT]CCCGCC[CT]CC -------------------------------------------------------------------------------- Time 739.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CCASYAGRKGGCRSY MEME-4 width = 15 sites = 214 llr = 2219 E-value = 4.6e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCASYAGRKGGCRSY MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:7:18:4:::2311 pos.-specific C 9a:64::::::7154 probability G ::2411a66a9:631 matrix T 1:2:41::3::1:14 bits 2.2 2.0 * * 1.7 * * * 1.5 * * ** Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (15.0 bits) 0.9 **** ******* 0.7 **** ******** 0.4 **** ******** 0.2 *************** 0.0 --------------- Multilevel CCACCAGGGGGCGCT consensus GT AT AGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASYAGRKGGCRSY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 11.366 E= 4.6e-056 -187 167 -1439 -211 -1439 184 -1439 -557 159 -489 -73 -53 -1439 113 50 -1439 -66 46 -125 70 187 -1439 -181 -105 -1439 -1439 185 -1439 66 -1439 120 -457 -225 -1439 118 54 -1439 -1439 185 -1439 -276 -1439 173 -240 -25 137 -1439 -125 60 -244 102 -225 -118 93 13 -166 -62 39 -125 75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASYAGRKGGCRSY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 214 E= 4.6e-056 0.060748 0.887850 0.000000 0.051402 0.000000 0.995327 0.000000 0.004673 0.668224 0.009346 0.168224 0.154206 0.000000 0.607477 0.392523 0.000000 0.140187 0.383178 0.116822 0.359813 0.813084 0.000000 0.079439 0.107477 0.000000 0.000000 1.000000 0.000000 0.350467 0.000000 0.640187 0.009346 0.046729 0.000000 0.630841 0.322430 0.000000 0.000000 1.000000 0.000000 0.032710 0.000000 0.925234 0.042056 0.186916 0.719626 0.000000 0.093458 0.336449 0.051402 0.565421 0.046729 0.098131 0.528037 0.303738 0.070093 0.144860 0.364486 0.116822 0.373832 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASYAGRKGGCRSY MEME-4 regular expression -------------------------------------------------------------------------------- CCA[CG][CT]AG[GA][GT]GGC[GA][CG][TC] -------------------------------------------------------------------------------- Time 846.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCT MEME-5 width = 7 sites = 107 llr = 1069 E-value = 1.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a::: pos.-specific C a::::a: probability G ::::::: matrix T :aa:a:a bits 2.2 **** * 2.0 ****** 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.4 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 ------- Multilevel CTTATCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 197400 bayes= 12.4946 E= 1.1e-014 -1339 182 -389 -1339 -1339 -1339 -1339 217 -1339 -1339 -1339 217 217 -1339 -1339 -1339 -1339 -1339 -1339 217 -1339 185 -1339 -1339 -1339 -1339 -1339 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 107 E= 1.1e-014 0.000000 0.981308 0.018692 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCT MEME-5 regular expression -------------------------------------------------------------------------------- CTTATCT -------------------------------------------------------------------------------- Time 949.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GACTACAWYTCCCAG MEME-6 width = 15 sites = 23 llr = 363 E-value = 8.9e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTACAWYTCCCAG MEME-6 Description -------------------------------------------------------------------------------- Simplified A 29::a:84:::::8: pos.-specific C :1a2:a::5:aaa:1 probability G 7:::::2:1::::27 matrix T :::8:::54a::::2 bits 2.2 * * 2.0 ** **** 1.7 * ** **** 1.5 ****** ***** Relative 1.3 ****** ***** Entropy 1.1 ****** ***** (22.7 bits) 0.9 ******** ****** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GACTACATCTCCCAG consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTACAWYTCCCAG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 14.4989 E= 8.9e-014 -3 -267 141 -1117 204 -168 -1117 -1117 -235 178 -1117 -1117 -1117 -68 -1117 190 217 -1117 -1117 -1117 -1117 185 -1117 -1117 190 -1117 -68 -1117 97 -267 -1117 123 -1117 78 -168 97 -1117 -1117 -1117 217 -1117 185 -1117 -1117 -1117 185 -1117 -1117 -1117 185 -1117 -1117 190 -1117 -68 -1117 -1117 -168 141 -35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTACAWYTCCCAG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 23 E= 8.9e-014 0.217391 0.043478 0.739130 0.000000 0.913043 0.086957 0.000000 0.000000 0.043478 0.956522 0.000000 0.000000 0.000000 0.173913 0.000000 0.826087 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.826087 0.000000 0.173913 0.000000 0.434783 0.043478 0.000000 0.521739 0.000000 0.478261 0.086957 0.434783 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.826087 0.000000 0.173913 0.000000 0.000000 0.086957 0.739130 0.173913 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTACAWYTCCCAG MEME-6 regular expression -------------------------------------------------------------------------------- [GA]ACTACA[TA][CT]TCCCAG -------------------------------------------------------------------------------- Time 1053.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCACTCCAGCCTGG MEME-7 width = 15 sites = 15 llr = 273 E-value = 2.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCACTCCAGCCTGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A :::9:1::9:::::: pos.-specific C ::a:a:a91:9a::: probability G 1a:1:::1:a1::aa matrix T 9::1:9::::1:a:: bits 2.2 * 2.0 ** * * * **** 1.7 *** * * ** **** 1.5 ********** **** Relative 1.3 ********** **** Entropy 1.1 *************** (26.3 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel TGCACTCCAGCCTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTCCAGCCTGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 14.2297 E= 2.1e-005 -1055 -1055 -206 207 -1055 -1055 185 -1055 -1055 185 -1055 -1055 196 -1055 -206 -173 -1055 185 -1055 -1055 -73 -1055 -1055 196 -1055 185 -1055 -1055 -1055 175 -206 -1055 207 -206 -1055 -1055 -1055 -1055 185 -1055 -1055 164 -206 -173 -1055 185 -1055 -1055 -1055 -1055 -1055 217 -1055 -1055 185 -1055 -1055 -1055 185 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTCCAGCCTGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 15 E= 2.1e-005 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.000000 0.066667 0.066667 0.000000 1.000000 0.000000 0.000000 0.133333 0.000000 0.000000 0.866667 0.000000 1.000000 0.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.933333 0.066667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.066667 0.066667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTCCAGCCTGG MEME-7 regular expression -------------------------------------------------------------------------------- TGCACTCCAGCCTGG -------------------------------------------------------------------------------- Time 1162.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AAASAGGAAGT MEME-8 width = 11 sites = 75 llr = 777 E-value = 2.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAASAGGAAGT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 776:9::a9:: pos.-specific C 1116::1:::1 probability G 2113:a9::a: matrix T :121::::1:9 bits 2.2 * 2.0 * * * 1.7 * **** 1.5 ** **** Relative 1.3 ******* Entropy 1.1 ******* (14.9 bits) 0.9 * ******* 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel AAACAGGAAGT consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASAGGAAGT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 12.7308 E= 2.9e-004 164 -138 -58 -405 162 -92 -180 -125 140 -138 -206 11 -1287 111 26 -173 203 -280 -438 -247 -1287 -1287 185 -1287 -1287 -92 162 -1287 217 -1287 -1287 -1287 205 -1287 -1287 -147 -1287 -438 183 -1287 -1287 -238 -1287 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASAGGAAGT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 75 E= 2.9e-004 0.693333 0.106667 0.186667 0.013333 0.680000 0.146667 0.080000 0.093333 0.586667 0.106667 0.066667 0.240000 0.000000 0.600000 0.333333 0.066667 0.906667 0.040000 0.013333 0.040000 0.000000 0.000000 1.000000 0.000000 0.000000 0.146667 0.853333 0.000000 1.000000 0.000000 0.000000 0.000000 0.920000 0.000000 0.000000 0.080000 0.000000 0.013333 0.986667 0.000000 0.000000 0.053333 0.000000 0.946667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASAGGAAGT MEME-8 regular expression -------------------------------------------------------------------------------- AA[AT][CG]AGGAAGT -------------------------------------------------------------------------------- Time 1270.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCMTGCGCG MEME-9 width = 11 sites = 103 llr = 1093 E-value = 3.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCMTGCGCG MEME-9 Description -------------------------------------------------------------------------------- Simplified A 2:::4:::::3 pos.-specific C :a:9531a:a: probability G 8:a11:9:a:7 matrix T :::::7::::: bits 2.2 2.0 ** * 1.7 ** *** 1.5 ** *** Relative 1.3 *** ***** Entropy 1.1 **** ***** (15.3 bits) 0.9 **** ****** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GCGCCTGCGCG consensus A AC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMTGCGCG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 11.9979 E= 3.1e-003 -6 -1333 145 -293 -1333 185 -1333 -1333 -1333 -1333 185 -1333 -1333 164 -103 -1333 84 97 -225 -1333 -1333 -14 -1333 175 -1333 -114 165 -1333 -1333 185 -1333 -1333 -1333 -384 180 -451 -293 180 -1333 -1333 39 -325 129 -1333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMTGCGCG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 103 E= 3.1e-003 0.213592 0.000000 0.757282 0.029126 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.864078 0.135922 0.000000 0.398058 0.543689 0.058252 0.000000 0.000000 0.252427 0.000000 0.747573 0.000000 0.126214 0.873786 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.019417 0.970874 0.009709 0.029126 0.970874 0.000000 0.000000 0.291262 0.029126 0.679612 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMTGCGCG MEME-9 regular expression -------------------------------------------------------------------------------- [GA]CGC[CA][TC]GCGC[GA] -------------------------------------------------------------------------------- Time 1373.31 secs. ******************************************************************************** ******************************************************************************** MOTIF RGCTCACTGCAGCCT MEME-10 width = 15 sites = 20 llr = 302 E-value = 2.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCTCACTGCAGCCT MEME-10 Description -------------------------------------------------------------------------------- Simplified A 7:::2a121:a221: pos.-specific C ::8:8:731a::79: probability G 4a2:::::9::91:: matrix T :::a::36::::1:a bits 2.2 * * * * 2.0 * * * ** * 1.7 * * * ** * 1.5 * * * ** * Relative 1.3 * * * **** ** Entropy 1.1 ****** **** ** (21.8 bits) 0.9 ******* **** ** 0.7 ************ ** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel AGCTCACTGCAGCCT consensus G G A TC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCTCACTGCAGCCT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 13.3919 E= 2.8e-002 155 -1097 33 -1097 -1097 -1097 185 -1097 -1097 152 -48 -1097 -1097 -1097 -1097 217 -15 152 -1097 -1097 217 -1097 -1097 -1097 -215 133 -1097 17 -15 -15 -1097 131 -215 -247 169 -1097 -1097 185 -1097 -1097 217 -1097 -1097 -1097 -56 -1097 161 -1097 -56 122 -147 -115 -115 169 -1097 -1097 -1097 -1097 -1097 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCTCACTGCAGCCT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 20 E= 2.8e-002 0.650000 0.000000 0.350000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.700000 0.000000 0.250000 0.200000 0.250000 0.000000 0.550000 0.050000 0.050000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.150000 0.000000 0.850000 0.000000 0.150000 0.650000 0.100000 0.100000 0.100000 0.900000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCTCACTGCAGCCT MEME-10 regular expression -------------------------------------------------------------------------------- [AG]G[CG]T[CA]A[CT][TCA]GCAGCCT -------------------------------------------------------------------------------- Time 1478.60 secs. ******************************************************************************** ******************************************************************************** Stopped because the next motif E-value > 5.00e-02. ******************************************************************************** CPU: Timothys-iMac.local ********************************************************************************