fasta-io

Usage:

fasta-io [options] <sequence file>

Description

This utility reads a sequence file in FASTA format and writes it to standard output. It serves no purpose other than testing the FASTA reading code.

Input

<sequence file>

The name of a file containing a set of sequences in FASTA format.

Output

The program prints to standard output.

Options

Option Parameter Description Default Behavior
General Options
-blocksizen Read sequences in blocks of size n. Read one full sequence at a time.
-dna  Sets alphabet to DNA. The protein alphabet is used.
-many  Read all sequences into memory at start up.