fasta-make-index <sequence file> [options]
Make an index for a FASTA file for use by fasta-fetch.
The name of a file of sequences in FASTA format.
Writes an index file to <sequence file>.index.
| Option | Parameter | Description | Default Behavior |
|---|---|---|---|
| General Options | |||
| -f | Overwrite an existing file if one exists. | ||
| -sp | Make a swissprot index by stripping all but the last part of sequence names. | ||
| -l | Index by sequence name and lowercased name. | ||
| -aa | Include first amino acid index found in parens. | ||
| -gc | genechip format: first field in pipes | ||
| -gi | If the identifier starts with "gi|number" replace it with number. | ||