matrix2meme

Usage:

matrix2meme [options]

Description

Convert count or frequency matrices separated by empty lines into MEME motifs.

Inputs

Count/Frequency Matrices

Reads matrices from standard input separated by empty lines.

Example DNA count matrix:

1 5 6 3
5 5 5 0
12 1 1 1

Output

The motifs are named based on their order in the file but their consensus sequence is used as the alternate name.

Options

Option Parameter Description Default Behavior
General Options
-orienauto|col|row Set the matrix orientation. The matrix orientation is automatically detected.