meme-get-motif [options]
Extract specified motifs from a MEME text (.txt) format file.
The program reads a file in MEME format from standard input.
The program writes a MEME text format file to standard output.
| Option | Parameter | Description | Default Behavior |
|---|---|---|---|
| General Options | |||
| -id | motif id | Extract the motif with ID motif id. This switch may be repeated. | Outputs nothing. |
| -a | Check the alternate ID instead of the ID of the motif for matches in conjunction with the -id option. (The alternate ID is the first word, if any, occurring after the ID on the MOTIF line in the MEME .txt file.) | Only the motif with the given ID is used. | |
| -ia | Check both the alternate ID and the ID of the motif for matches in conjunction with the -id option. | Only the motif with the given ID is used. | |
| -all | Extract all the motifs in the given file. | Extract only the motifs with the specified IDs. | |
| -rc | Reverse-complement each extracted motif before outputing. This requires a complementable alphabet. | Do not reverse-complement the motifs. | |