Database and Motifs High-scoring Motif Occurrences Debugging Information



FIMO - Motif search tool

FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE memechip_example_output_files/sample-dna-Klf1.fa
Database contains 904 sequences, 452000 residues

MOTIFS JASPAR_CORE_2009.meme (nucleotide)

MOTIF WIDTH BEST POSSIBLE MATCH
MA0001.1 10 CCATAAATAG
MA0002.1 11 TATTGTGGTTA
MA0002.2 11 GTCTGTGGTTT
MA0003.1 9 GCCCGGGGG
MA0004.1 6 CACGTG
MA0005.1 11 CCAAATTTGGT
MA0006.1 6 TGCGTG
MA0007.1 22 ATAAGAACATCGTGTACCCGCC
MA0008.1 8 CAATTATT
MA0009.1 11 CTAGGTGTGAA
MA0010.1 14 GTAATAAACAAATC
MA0011.1 8 TACTATTT
MA0012.1 11 TAAACTAAAAG
MA0013.1 11 TAGTAAACAAA
MA0014.1 20 AGAGCACTGAAGCGTAACGG
MA0015.1 10 GTATATATAC
MA0016.1 10 GGGGTCACGG
MA0017.1 14 TGACCTTTGAACCT
MA0018.1 12 CCTGGTGACGTC
MA0018.2 8 TGACGTCA
MA0019.1 12 AGATGCAATCCC
MA0020.1 6 AAAGCA
MA0021.1 6 AAAGCG
MA0022.1 12 GGGGTTTTTCCG
MA0023.1 10 GGGGTTTTCC
MA0024.1 8 TTTGGCGC
MA0025.1 11 TTATGTAACAT
MA0026.1 7 CCGGAAG
MA0027.1 11 AAGTAGTGTTC
MA0028.1 10 GAGCCGGAAG
MA0029.1 14 AAGATAAGATAATA
MA0030.1 14 CAAACGTAAACAAT
MA0031.1 8 GTAAACAT
MA0032.1 8 GGTAAGTA
MA0033.1 8 TATACATA
MA0034.1 10 GACAACCGCC
MA0035.1 6 GGATGG
MA0035.2 11 ACAGATAAGAA
MA0036.1 5 GGATA
MA0037.1 6 AGATAG
MA0038.1 10 CAAATCACTG
MA0039.1 10 TAAAGGAAGG
MA0039.2 10 TGGGTGGGGC
MA0040.1 11 TATTGTTTATT
MA0041.1 12 GAATGTTTGTTT
MA0042.1 12 GGATGTTTGTTT
MA0043.1 12 GGTTACGTAATT
MA0044.1 9 GTTGTATTC
MA00445.1 11 TCCATTGTTCT
MA0045.1 16 CAACAAATGGAAAAAC
MA0046.1 14 GGTTAATAATTAAC
MA0047.1 12 CAATATTTACTT
MA0047.2 12 TGTTTACTTAGG
MA0048.1 12 GCGCAGCTGCGT
MA0049.1 10 GCATAAAAAA
MA0050.1 12 GAAAGTGAAACC
MA0051.1 18 GGAAAGTGAAAGCAAAAC
MA0052.1 10 CTATTTATAG
MA0053.1 5 AAAGC
MA0054.1 9 TAACCGTTT
MA0055.1 12 CAGCAGCTGCTG
MA0056.1 6 TGGGGA
MA0057.1 10 GTAGGGGGAA
MA0058.1 10 AACCACGTGA
MA0059.1 11 GAGCACGTGGT
MA0060.1 16 CTCAGCCAATCAGCGC
MA0061.1 10 GGGAATTTCC
MA0062.1 10 ACCGGAAGAG
MA0062.2 11 CCGGAAGTGGC
MA0063.1 7 TTAATTG
MA0064.1 5 AAAGC
MA0065.1 20 TTAGGGGTCAAAGGTCATCT
MA0065.2 15 GTAGGGCAAAGGTCA
MA0066.1 20 GTAGGTCACGGTGACCTACT
MA0067.1 8 AGTCACGG
MA0068.1 30 GAAAAATTTCCAATACTCCACTCCCCCCCC
MA0069.1 14 TTCACGCATGAGTT
MA0070.1 12 CCATCAATCAAA
MA0071.1 10 ATCAAGGTCA
MA0072.1 14 TATAAGTAGGTCAA
MA0073.1 20 CCCCAAACCACCCCCCCCCA
MA0074.1 15 GGGTCATCGAGTTCA
MA0075.1 5 AATTA
MA0076.1 9 ACCGGAAGT
MA0077.1 9 GAACAATGG
MA0078.1 9 TTCATTGTC
MA0079.1 10 GGGGCGGGGT
MA0079.2 10 CCCCGCCCCC
MA0080.1 6 CGGAAG
MA0080.2 7 AGGAAGT
MA0081.1 7 AGAGGAA
MA0082.1 14 CCAAAAATGGAAAT
MA0083.1 12 GCCCATATATGG
MA0084.1 9 GTAAACAAT
MA0085.1 16 TTGTGGGAAACGAGAT
MA0086.1 6 CAGGTG
MA0087.1 7 TAACAAT
MA0088.1 20 GATTTCCCATAATGCCTTGC
MA0089.1 6 CATGAC
MA0090.1 12 CACATTCCTCCG
MA0091.1 12 CGACCATCTGTT
MA0092.1 10 GGTCTGGCAT
MA0093.1 7 CACGTGG
MA0094.1 4 TAAT
MA0094.2 8 TTTAATTA
MA0095.1 6 GCCATC
MA0096.1 7 ATGACGT
MA0097.1 12 GATGACGTGGCC
MA0098.1 6 TTTCCG
MA0099.1 8 GTGAGTCA
MA0099.2 7 TGACTCA
MA0100.1 8 GGCCGTTG
MA0101.1 10 GGGGATTTCC
MA0102.1 12 TTTCGCAATCTT
MA0102.2 9 TTTCGCAAT
MA0103.1 6 CACCTG
MA0104.1 6 CACGTG
MA0104.2 10 CGCACGTGGC
MA0105.1 11 GGGGATTCCCC
MA0106.1 20 CCGGACATGCCCGGGCATGT
MA0107.1 10 GGGAATTTCC
MA0108.1 15 GTATAAAAGGCGGGG
MA0108.2 15 GTATAAAAGGCGGGG
MA0109.1 10 AACCTTATAT
MA0110.1 9 CCAATTATT
MA0111.1 11 AGGGTAACAGC
MA0112.1 18 CCAGGTCACCGTGACCCC
MA0112.2 20 GGCCCAGGTCACCCTGACCT
MA0113.1 18 GGGAACATTATGTCCTAT
MA0114.1 13 AGGCCAAAGGTCA
MA0115.1 17 AAAGGTCAAAGGTCAAC
MA0116.1 15 GGCACCCAGGGGTGC
MA0117.1 8 GCTGACGG
MA0118.1 9 TGGGGGTTC
MA0119.1 14 TGGCACCATGCCAA
MA0120.1 12 TTTTCCTTTTCG
MA0121.1 8 AGATCCGC
MA0122.1 9 TTAAGTGGA
MA0123.1 10 CGGTGCCCCC
MA0124.1 7 ATACTTA
MA0125.1 8 TAATTGGT
MA0126.1 9 AGTAACAGT
MA0127.1 10 ACTTCTTATT
MA0128.1 8 ACACGTGG
MA0129.1 7 TACGTCA
MA0130.1 6 ATCCAC
MA0131.1 10 TAACGTCCGC
MA0132.1 6 CTAATT
MA0133.1 7 ACAACAC
MA0135.1 13 AAATTAATTAATC
MA0136.1 9 TACTTCCTT
MA0137.1 14 GGAAAATGAAACTG
MA0137.2 15 CATTTCCCGGAAACC
MA0138.1 19 GCGCTGTCCATGGTGCTGA
MA0138.2 21 TTCAGCACCATGGACAGCGCC
MA0139.1 19 TGGCCACCAGGGGGCGCTA
MA0140.1 18 CTGGTGGGGACAGATAAG
MA0141.1 12 AGCTCAAGGTCA
MA0142.1 15 CTTTGTTATGCAAAT
MA0143.1 15 CCTTTGTTATGCAAA
MA0144.1 10 TTCCAGGAAG
MA0145.1 14 CCAGTTCAAACCAG
MA0146.1 14 GGGGCCGAGGCCTG
MA0147.1 10 CGCACGTGGC
MA0148.1 11 TGTTTACTTTG
MA0149.1 18 GGAAGGAAGGAAGGAAGG
MA0150.1 11 ATGACTCAGCA
MA0151.1 6 ATTAAA
MA0152.1 7 TTTTCCA
MA0153.1 12 TTAATATTTAAC
MA0154.1 10 ACCCAAGGGA
MA0155.1 12 TGTCAGGGGGCG
MA0156.1 8 CAGGAAAT
MA0157.1 8 TGTAAACA
MA0158.1 8 CACTAATT
MA0159.1 17 AGGTCATGGAGAGGTCA
MA0160.1 8 AAGGTCAC
MA0161.1 6 TTGGCA
MA0162.1 11 TGCGTGGGCGT
MA0163.1 14 GGGGCCCAAGGGGG
MA0164.1 7 CAAGCTT
MA0165.1 7 TTTATGA
MA0166.1 7 TTAATGA
MA0167.1 7 TTAATTA
MA0168.1 7 TTAATTG
MA0169.1 7 TTAATTG
MA0170.1 7 TTAATTA
MA0171.1 7 TTAATTG
MA0172.1 7 TTAATTA
MA0173.1 7 TTAACAT
MA0174.1 7 TTTATTA
MA0175.1 7 TTAATTG
MA0176.1 7 TTAATTA
MA0177.1 7 TTAATTA
MA0178.1 7 TTAATTA
MA0179.1 7 TTAATTA
MA0180.1 9 TTTAATTAG
MA0181.1 7 TTAATTA
MA0182.1 7 TTTATTA
MA0183.1 8 TTTAATTA
MA0184.1 7 CTAATTA
MA0185.1 6 TTCGTG
MA0186.1 7 TTAATGA
MA0187.1 7 TAATTAC
MA0188.1 7 CCAATTA
MA0189.1 7 TTAATTA
MA0190.1 6 TAATCC
MA0191.1 7 TTAATTA
MA0192.1 7 TTAATTG
MA0193.1 7 CTACCAA
MA0194.1 7 TTAATTA
MA0195.1 7 TTAATTA
MA0196.1 7 TTAATTG
MA0197.1 8 TTTAATTA
MA0198.1 7 CTAATTA
MA0199.1 5 TGATA
MA0200.1 7 CTAATTA
MA0201.1 7 TTAATCC
MA0202.1 7 CTAATTA
MA0203.1 7 TTAATGA
MA0204.1 6 TGATAC
MA0205.1 10 TTGCTCTCTC
MA0206.1 7 TTAATTA
MA0207.1 6 TGACAG
MA0208.1 7 TAATTAA
MA0209.1 7 CTAATTA
MA0210.1 5 TAACA
MA0211.1 7 TTAAGTG
MA0212.1 6 TAATCC
MA0213.1 8 CTGGCGCC
MA0214.1 7 TTAATTG
MA0215.1 7 TTAATGA
MA0216.1 7 TTTATTG
MA0217.1 5 TAACA
MA0218.1 6 TTGAAC
MA0219.1 7 TTAATGA
MA0220.1 7 TTAATTA
MA0221.1 7 CTAATGA
MA0222.1 8 TTTTGACA
MA0223.1 7 GTAATTA
MA0224.1 7 GTAATTA
MA0225.1 7 TTAATTA
MA0226.1 7 TTAATTA
MA0227.1 6 TGACAG
MA0228.1 7 CTAATTA
MA0229.1 8 TCTAATTA
MA0230.1 7 TTAATTA
MA0231.1 6 TAACTA
MA0232.1 6 TAATTA
MA0233.1 5 AAACA
MA0234.1 6 TAATCC
MA0235.1 7 TTGATTT
MA0236.1 7 TTAATTA
MA0237.1 8 CTTTGATC
MA0238.1 7 TTAATTA
MA0239.1 9 AGTAACAGT
MA0240.1 7 TTAATTA
MA0241.1 7 CTAATTA
MA0242.1 9 TAACCGCAA
MA0243.1 12 GACATTCCTCGA
MA0244.1 8 ATTGCAAA
MA0245.1 7 TTAATTA
MA0246.1 6 TGATAC
MA0247.1 8 CTCAAGTG
MA0248.1 7 TTAATTG
MA0249.1 12 TCGCATATGTTG
MA0250.1 7 TTAATTG
MA0251.1 7 TTAATTA
MA0252.1 6 TGACAG
MA0253.1 9 TTTCAAGTG
MA0254.1 6 TATGCA
MA0255.1 10 TTGAGTGATT
MA0256.1 7 CTAATGA
MA0257.1 7 TTAATTA
MA0258.1 18 CAAGGTCACGGTGACCTG
MA0259.1 8 GGACGTGC
MA0260.1 6 GAAACC
MA0261.1 6 GAACAC
MA0262.1 13 AATGTTGCGAATT
MA0263.1 14 ATTGGCTTCGTTAA
MA0264.1 11 ACCACTTGAAA
MA0265.1 16 TCGTATAAAGTGATAT
MA0266.1 7 CTCTAGA
MA0267.1 7 ACCAGCA
MA0268.1 7 ACCCCAC
MA0269.1 21 TTACATATTGCACCCGATTGG
MA0270.1 8 CACACCCC
MA0271.1 6 AGACGC
MA0272.1 8 GTGACTCT
MA0273.1 21 GATAATTCTCGGCAAGTATGT
MA0274.1 8 ACTTGAAT
MA0275.1 6 CCGGAA
MA0276.1 10 CCGGATCGGG
MA0277.1 9 AAAAAGAAA
MA0278.1 21 GCACAGCCAGAGTCAAGTCAA
MA0279.1 10 ATTAGTAAGC
MA0280.1 6 CCGGAA
MA0281.1 8 GCACGTGA
MA0282.1 8 CTCGGAAA
MA0283.1 8 GGCGGAGA
MA0284.1 10 TTACGTAATC
MA0285.1 9 CTAAGCCAC
MA0286.1 9 ATGACGTAA
MA0287.1 11 CAGCAAAAATG
MA0288.1 9 TGACACATT
MA0289.1 7 CGATAAG
MA0290.1 19 AAAAGCCGCGGGCGGGATT
MA0291.1 9 AATGTGCGC
MA0292.1 7 CTCCGGA
MA0293.1 11 AAAGATCTAAA
MA0294.1 9 CGGAAAAAT
MA0295.1 8 GACGCAAA
MA0296.1 20 TGAATTGTAAACAAAGAGGA
MA0297.1 7 GTAAACA
MA0298.1 6 CTATCA
MA0299.1 15 CGGGGAACAGTACTC
MA0300.1 8 CCGATAAG
MA0301.1 9 AGATCTACA
MA0302.1 11 AAAGATCTAAA
MA0303.1 21 CAAGGGATGAGTCATACTTCA
MA0304.1 8 TGGAAGCC
MA0305.1 7 GCTTCCT
MA0306.1 9 ACCCCTAAA
MA0307.1 5 GATAA
MA0308.1 21 ATTAAAAAACTCCGGAGTATA
MA0309.1 8 TGATAAGA
MA0310.1 8 GACACGTG
MA0311.1 5 CGGAA
MA0312.1 8 CGGAGATA
MA0313.1 5 TTGGT
MA0314.1 15 TCTGATTGGTTCAGA
MA0315.1 15 ACCAATCAGAGGCGA
MA0316.1 15 TGGGATCTGATTGGT
MA0317.1 8 ATAAACAA
MA0318.1 8 CATGTAAT
MA0319.1 8 ATGGAACA
MA0320.1 8 CCGCCGAG
MA0321.1 9 GCATGTGAA
MA0322.1 9 GCATGTGAA
MA0323.1 15 AAGCCGGAAGCGGGG
MA0324.1 10 CCGTTACCGG
MA0325.1 8 CCGGAATT
MA0326.1 8 TTTGCTCA
MA0327.1 7 ACACAAT
MA0328.1 9 CATGTAATT
MA0329.1 7 ACGCGTA
MA0330.1 7 ACGCGTT
MA0331.1 12 CCCAATTAGGAA
MA0332.1 6 CTGTGG
MA0333.1 9 AGTGTGGCG
MA0334.1 7 CGCCACA
MA0335.1 8 AACTGTGG
MA0336.1 21 AGGACTATAGAACACTCTAAA
MA0337.1 7 CCCCCGC
MA0338.1 7 CCCCGCA
MA0339.1 7 CCCCGCA
MA0340.1 6 TAGGTA
MA0341.1 5 AGGGG
MA0342.1 5 AGGGG
MA0343.1 21 TTTCCGGCCACAAAAACGCAA
MA0344.1 8 GCCGGGGA
MA0345.1 21 ATGACCTATATATAAAAATGA
MA0346.1 20 TTTATTTATATATAATATGA
MA0347.1 20 CTAGATCAGGGTCCATCGCA
MA0348.1 9 TCGGAGATA
MA0349.1 7 CGAACCG
MA0350.1 21 AGGCACAGCTCATCGCGTTTT
MA0351.1 21 TTCTGCACCTCATCGCATCCT
MA0352.1 8 TCCGCGGA
MA0353.1 8 TCCGCGGA
MA0354.1 8 ACGGAGAT
MA0355.1 10 ACCTGCAGCA
MA0356.1 6 ATAATA
MA0357.1 8 GCACGTGC
MA0358.1 8 CCCGGGAA
MA0359.1 10 CACCCATACA
MA0360.1 8 TGCGGAAC
MA0361.1 7 CGGCCGA
MA0362.1 7 CTCGGGG
MA0363.1 9 GTTACCCGG
MA0364.1 7 CCCCTGA
MA0365.1 8 GGTTGCTA
MA0366.1 5 AGGGG
MA0367.1 11 AATTTTTCCGG
MA0368.1 7 CGCCAAG
MA0369.1 18 AGTTCTATAAATAGATTC
MA0370.1 10 TCCAAAGGAA
MA0371.1 12 TCCATTGTTCTC
MA0372.1 8 ACCCCTAA
MA0373.1 7 GGTGGCG
MA0374.1 7 CGCGCGG
MA0375.1 8 CGCGCGCG
MA0376.1 20 ATATTAGCACGTGCTTAGTC
MA0377.1 21 TAGAGAATAGAAGAAATAAAA
MA0378.1 21 ATTGAAAAAAATTTTCTACGG
MA0379.1 5 ATATA
MA0380.1 7 CTCCGGA
MA0381.1 6 GGCCAT
MA0382.1 8 ACGTAATG
MA0383.1 21 TTACCTATAATTAAATTAGCA
MA0384.1 11 TGGTAGCGCCG
MA0385.1 11 ACCTGCAGGCA
MA0386.1 21 GACTAGATATATATATTCGAT
MA0387.1 10 AATTAAAGAA
MA0388.1 8 GAAATCAA
MA0389.1 8 AGATCTAC
MA0390.1 21 GTCCAAAATTTTTCACTCTGG
MA0391.1 7 CTCGGAA
MA0392.1 8 CGGTGTTA
MA0393.1 7 TGAAACA
MA0394.1 8 TGCGGCGC
MA0395.1 20 TGATCGGCGCCGCACGACGA
MA0396.1 9 GCTAGCGCA
MA0397.1 9 GATAGCGCA
MA0398.1 9 AAAATTTTT
MA0399.1 7 CGCGGGG
MA0400.1 20 ATGATAAACTCCGAAAATTT
MA0401.1 8 ACGCGAAA
MA0402.1 8 TGCTGGTT
MA0403.1 8 AACCCTAA
MA0404.1 8 CGGATCCG
MA0405.1 8 GCGGACAT
MA0406.1 8 ACATTCCC
MA0407.1 15 GGAAACTCTAAGAAC
MA0408.1 8 CTGTCAAA
MA0409.1 7 CACGTGA
MA0410.1 8 CGGCGGGA
MA0411.1 7 TATACGA
MA0412.1 13 TCGGCGGCTAATT
MA0413.1 20 AAATTCCCCCTGAATTTGTG
MA0414.1 7 CTCGAGA
MA0415.1 20 ATTTGCTTACGTAAGCTCGT
MA0416.1 8 ATTACGTA
MA0417.1 6 AAGCAT
MA0418.1 20 GGTCTGATTACGTAAGCGAC
MA0419.1 11 ATTAGTAAGCA
MA0420.1 8 ACCGGAAC
MA0421.1 10 TTTACCCGGC
MA0422.1 10 CCGGAGATAA
MA0423.1 9 ACCCCTATT
MA0424.1 8 CTCCGGAA
MA0425.1 14 ACCCCACTTTTTTA
MA0426.1 6 TAATTG
MA0427.1 11 AGCTCCGGAGA
MA0428.1 9 AACGGAAAT
MA0429.1 7 CGGCCGA
MA0430.1 8 CCGGAGTT
MA0431.1 9 ACCCCGCAC
MA0432.1 8 TCGGAGAT
MA0433.1 8 TTAATTAA
MA0434.1 9 TGTAGATCA
MA0435.1 20 TGAAGACGTAAATCCTTACA
MA0436.1 7 CCCCACG
MA0437.1 9 ATTTCTCCG
MA0438.1 8 ACGGAAAT
MA0439.1 11 CTTATCTCCGC
MA0440.1 15 ACCTTAAAGGTCATG
MA0441.1 9 TTCCCCGCA
MA0442.1 6 CTTTGT
MA0443.1 10 AGGGGGCGGA
MA0444.1 7 TTAATTG
MA0446.1 11 TGTTTGCTTAA
MA0447.1 10 ATTACGTAAT
MA0448.1 7 TTAATTA
MA0449.1 10 GGCACGTGCC
MA0450.1 9 GGGGCGTGA
MA0451.1 12 AAACTAGAGCAC
MA0452.1 11 CAAAAGGGTTA
MA0453.1 12 TATGCAAATTAG
MA0454.1 11 AACAGTAGCAG
MA0455.1 7 CTAATTA
MA0456.1 12 GACCCCCCGCTG
MA0457.1 7 TTAATTA
MA0458.1 11 TTGTTTACATT
MA0459.1 10 AAAAGTCAAA
MA0460.1 9 AAGGATAAT

Random model letter frequencies (from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256


SECTION I: HIGH-SCORING MOTIF OCCURRENCES

Motif Sequence Name Strand Start End p-value q-value Matched Sequence
MA0450.1 chr5 + 77087386 77087394 3.37e-06 0.358 GGGGCGTGA
MA0450.1 chr5 + 104484087 104484095 6.91e-06 0.358 TGGGCGTGA
MA0450.1 chr8 + 73222366 73222374 6.91e-06 0.358 TGGGCGTGA
MA0450.1 chr11 + 87563806 87563814 6.91e-06 0.358 TGGGCGTGA
MA0450.1 chr11 + 101177070 101177078 6.91e-06 0.358 TGGGCGTGA
MA0450.1 chr9 44096812 44096820 1.05e-05 0.358 GAGGCGTGA
MA0450.1 chr1 137838458 137838466 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr3 100351631 100351639 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr4 153400910 153400918 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr5 17335146 17335154 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr5 87233128 87233136 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr6 57653331 57653339 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr6 57653561 57653569 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr12 + 112506070 112506078 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr13 57679402 57679410 1.77e-05 0.358 AGGGCGTGA
MA0450.1 chr8 + 73222351 73222359 2.09e-05 0.358 GGGGCGTGC
MA0450.1 chr9 + 59598234 59598242 2.09e-05 0.358 GGGGCGTGC
MA0450.1 chr11 + 60988840 60988848 2.09e-05 0.358 GGGGCGTGC
MA0450.1 chr19 4558682 4558690 2.09e-05 0.358 GGGGCGTGC
MA0450.1 chr19 8797827 8797835 2.09e-05 0.358 GGGGCGTGC
MA0450.1 chr5 45951820 45951828 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr6 + 144850518 144850526 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr7 6315746 6315754 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr7 6315932 6315940 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr12 + 41693490 41693498 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr12 + 80012974 80012982 2.43e-05 0.358 GGGGCGTGT
MA0450.1 chr1 + 134941764 134941772 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr4 118863368 118863376 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr5 + 87233106 87233114 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr7 6315696 6315704 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr7 + 28266781 28266789 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr9 + 59598212 59598220 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr9 107198874 107198882 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr12 85792234 85792242 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr12 113882732 113882740 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr14 + 63729453 63729461 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr15 + 85935992 85936000 2.75e-05 0.358 GGGGCGGGA
MA0450.1 chr4 + 106351700 106351708 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr5 118933726 118933734 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr6 + 144850529 144850537 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr7 20250779 20250787 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr7 26004938 26004946 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr8 + 73222378 73222386 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr9 + 21069704 21069712 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr9 + 66764131 66764139 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr9 + 108710130 108710138 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr11 57590823 57590831 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr11 + 117187431 117187439 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr12 + 85792406 85792414 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr17 + 12397940 12397948 3.07e-05 0.358 GGGGCGTGG
MA0450.1 chr3 60589250 60589258 3.41e-05 0.358 TGGGCGTGC
MA0450.1 chr4 118293358 118293366 3.41e-05 0.358 TGGGCGTGC
MA0450.1 chr1 122156001 122156009 3.76e-05 0.358 TGGGCGTGT
MA0450.1 chr15 + 36250919 36250927 3.76e-05 0.358 TGGGCGTGT
MA0450.1 chr3 151777921 151777929 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr4 44017274 44017282 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr8 + 126512578 126512586 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr9 107198977 107198985 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr11 50038247 50038255 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr11 104890512 104890520 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr14 63796725 63796733 4.1e-05 0.358 TGGGCGGGA
MA0450.1 chr1 173211167 173211175 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr2 157978584 157978592 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr4 + 153535368 153535376 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr7 + 38970426 38970434 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr7 + 103854078 103854086 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr8 + 73222590 73222598 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr9 + 21069585 21069593 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr9 70682771 70682779 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr10 41632329 41632337 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr11 + 60989092 60989100 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr11 + 115374879 115374887 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr11 + 117642327 117642335 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr12 78031386 78031394 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr12 85791959 85791967 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr15 83139351 83139359 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr17 + 28946364 28946372 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr18 13094711 13094719 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr18 23982762 23982770 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr19 45865286 45865294 4.44e-05 0.358 TGGGCGTGG
MA0450.1 chr2 130961608 130961616 4.81e-05 0.383 AAGGCGTGA
MA0450.1 chr1 36977347 36977355 5.15e-05 0.4 GAGGCGTGC
MA0450.1 chr13 + 114606063 114606071 5.15e-05 0.4 GAGGCGTGC
MA0450.1 chr4 117504728 117504736 5.5e-05 0.413 GAGGCGTGT
MA0450.1 chr9 + 66351938 66351946 5.5e-05 0.413 GAGGCGTGT
MA0450.1 chr16 91353046 91353054 5.5e-05 0.413 GAGGCGTGT
MA0450.1 chr11 + 101177190 101177198 5.84e-05 0.423 GAGGCGGGA
MA0450.1 chr17 87913117 87913125 5.84e-05 0.423 GAGGCGGGA
MA0450.1 chr19 + 8994838 8994846 5.84e-05 0.423 GAGGCGGGA
MA0450.1 chr19 + 5727127 5727135 6.19e-05 0.439 GGGGCGTTA
MA0450.1 chr19 18835720 18835728 6.19e-05 0.439 GGGGCGTTA
MA0450.1 chr7 135432809 135432817 6.53e-05 0.458 GAGGCGTGG
MA0450.1 chr5 139858393 139858401 6.89e-05 0.461 TAGGCGTGC
MA0450.1 chr7 + 56247826 56247834 6.89e-05 0.461 TAGGCGTGC
MA0450.1 chr4 + 117601395 117601403 7.26e-05 0.461 TAGGCGTGT
MA0450.1 chr5 121049862 121049870 7.26e-05 0.461 TAGGCGTGT
MA0450.1 chr9 + 59598589 59598597 7.26e-05 0.461 TAGGCGTGT
MA0450.1 chr11 + 117642112 117642120 7.26e-05 0.461 TAGGCGTGT
MA0450.1 chr4 + 41334965 41334973 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr5 + 96888806 96888814 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr7 56247807 56247815 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr8 24164667 24164675 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr9 24715266 24715274 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr18 60666932 60666940 7.59e-05 0.461 AGGGCGTGC
MA0450.1 chr1 9738506 9738514 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr1 88057279 88057287 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr5 + 129723570 129723578 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr9 114376098 114376106 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr10 60612628 60612636 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr11 + 4577431 4577439 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr11 + 99087796 99087804 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr11 + 116481486 116481494 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr12 + 84938334 84938342 8.3e-05 0.461 TAGGCGGGA
MA0450.1 chr13 45622822 45622830 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr15 98886792 98886800 8.3e-05 0.461 TAGGCGGGA
MA0450.1 chr17 + 47673135 47673143 8.3e-05 0.461 AGGGCGTGT
MA0450.1 chr1 134264197 134264205 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr5 + 97380857 97380865 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr6 + 136416935 136416943 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr11 69714505 69714513 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr14 63796736 63796744 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr19 + 55358653 55358661 9.01e-05 0.472 AGGGCGGGA
MA0450.1 chr7 + 16685384 16685392 9.37e-05 0.472 TAGGCGTGG
MA0450.1 chr18 32702312 32702320 9.37e-05 0.472 TAGGCGTGG
MA0450.1 chr1 + 136638953 136638961 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr4 34497808 34497816 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr4 132806727 132806735 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr7 29610323 29610331 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr8 + 125244389 125244397 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr9 + 44773789 44773797 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr10 128184999 128185007 9.67e-05 0.472 GGGGCGGGC
MA0450.1 chr12 90222637 90222645 9.67e-05 0.472 GGGGCGGGC

DEBUGGING INFORMATION

Command line:

/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_3 --bgfile memechip_example_output_files/background --motif MA0450.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa

Settings:

output directory = memechip_example_output_files/fimo_out_3 MEME file name = JASPAR_CORE_2009.meme sequence file name = memechip_example_output_files/sample-dna-Klf1.fa
background file name = memechip_example_output_files/background allow clobber = true compute q-values = true
parse genomic coord. = true text only = false scan both strands = true
max sequence length = 250000000 output threshold = 0.0001 threshold type = p-value
max stored scores = 100000 pseudocount = 0.1 verbosity = 1
selected motif = MA0450.1

This information can be useful in the event you wish to report a problem with the FIMO software.


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