Database and Motifs | High-scoring Motif Occurrences | Debugging Information |
FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE
memechip_example_output_files/sample-dna-Klf1.fa
Database contains
904
sequences,
452000
residues
MOTIFS memechip_example_output_files/meme_out/meme.xml (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 12 | CAGCCACACCCA |
2 | 8 | CAGATAAG |
3 | 29 | CTGCATCTCTTCAAGACACACCTAACTGC |
Random model letter frequencies
(from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|
2 | chr1 | − | 77295361 | 77295368 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr1 | − | 92186194 | 92186201 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr1 | + | 173211157 | 173211164 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr2 | + | 34638700 | 34638707 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr2 | + | 37405294 | 37405301 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr2 | − | 93306629 | 93306636 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr3 | + | 60623753 | 60623760 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr3 | − | 101355939 | 101355946 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr4 | − | 129141107 | 129141114 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr5 | + | 37127459 | 37127466 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr5 | − | 64827033 | 64827040 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr5 | − | 65203463 | 65203470 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr5 | − | 139672881 | 139672888 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr5 | + | 140280283 | 140280290 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr6 | + | 38874342 | 38874349 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr7 | + | 71081624 | 71081631 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr7 | − | 104332701 | 104332708 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr7 | − | 110976645 | 110976652 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr7 | + | 111007774 | 111007781 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr7 | − | 128112955 | 128112962 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr8 | − | 122895877 | 122895884 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr9 | + | 75406773 | 75406780 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr9 | + | 114376116 | 114376123 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr11 | − | 32169132 | 32169139 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr11 | − | 94859085 | 94859092 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr11 | − | 121295705 | 121295712 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr14 | − | 71023831 | 71023838 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr14 | + | 79703162 | 79703169 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr15 | + | 73573716 | 73573723 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr16 | − | 12052334 | 12052341 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr16 | + | 32509275 | 32509282 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr16 | − | 32510146 | 32510153 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr16 | − | 92716218 | 92716225 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr17 | + | 12397974 | 12397981 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr17 | + | 36139154 | 36139161 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr17 | − | 37006354 | 37006361 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr18 | − | 62325951 | 62325958 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr18 | + | 78548258 | 78548265 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr19 | − | 24354257 | 24354264 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr19 | + | 55940488 | 55940495 | 1.6e-05 | 0.206 | CAGATAAG |
2 | chr1 | − | 36977332 | 36977339 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr1 | + | 59011056 | 59011063 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr1 | + | 134264551 | 134264558 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr1 | + | 135847023 | 135847030 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr1 | + | 169314584 | 169314591 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr2 | − | 28463356 | 28463363 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr2 | − | 103324507 | 103324514 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr2 | − | 121964007 | 121964014 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr3 | − | 39901756 | 39901763 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr3 | − | 121365904 | 121365911 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr3 | + | 138480135 | 138480142 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr4 | + | 8631930 | 8631937 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr4 | − | 9588295 | 9588302 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr4 | − | 42890742 | 42890749 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr4 | + | 118241534 | 118241541 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr4 | − | 134537975 | 134537982 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr5 | + | 89056795 | 89056802 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr5 | + | 105995025 | 105995032 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr5 | − | 137731018 | 137731025 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr6 | − | 117858738 | 117858745 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr7 | + | 16685470 | 16685477 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr7 | − | 53194022 | 53194029 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr7 | + | 106743016 | 106743023 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr7 | + | 139969710 | 139969717 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr8 | + | 83025439 | 83025446 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr8 | − | 97964245 | 97964252 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr8 | − | 108345053 | 108345060 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr9 | + | 21069620 | 21069627 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr9 | − | 44096716 | 44096723 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr9 | + | 70774809 | 70774816 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr9 | − | 121335783 | 121335790 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr10 | − | 40924919 | 40924926 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr10 | − | 60612430 | 60612437 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr10 | + | 110604526 | 110604533 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr10 | − | 127624600 | 127624607 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | − | 31712398 | 31712405 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | − | 32145858 | 32145865 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | + | 53840219 | 53840226 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | − | 69186917 | 69186924 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | + | 90524587 | 90524594 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | + | 97307712 | 97307719 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr11 | − | 104890501 | 104890508 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr12 | − | 41693278 | 41693285 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr12 | + | 41693521 | 41693528 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr12 | + | 90222861 | 90222868 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr12 | − | 90222893 | 90222900 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr13 | + | 3866626 | 3866633 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr13 | + | 73580946 | 73580953 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr13 | − | 76003447 | 76003454 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr13 | + | 104819778 | 104819785 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr14 | + | 61272960 | 61272967 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr14 | − | 70506950 | 70506957 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr16 | + | 10384462 | 10384469 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr16 | − | 34031799 | 34031806 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr17 | − | 24340090 | 24340097 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr18 | − | 80417136 | 80417143 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr19 | + | 10736602 | 10736609 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr19 | − | 17398038 | 17398045 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr19 | + | 24609412 | 24609419 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr19 | − | 53260174 | 53260181 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr19 | + | 56466261 | 56466268 | 3.19e-05 | 0.206 | GAGATAAG |
2 | chr1 | + | 59011096 | 59011103 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr1 | − | 77295522 | 77295529 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr1 | − | 157198903 | 157198910 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | − | 84652227 | 84652234 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | − | 132521550 | 132521557 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | − | 150491916 | 150491923 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | + | 172173994 | 172174001 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | + | 172174042 | 172174049 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | − | 180447334 | 180447341 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr3 | − | 60589218 | 60589225 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr3 | + | 68858868 | 68858875 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr3 | − | 144333316 | 144333323 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr4 | − | 111174210 | 111174217 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr4 | + | 135734047 | 135734054 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr4 | + | 154285938 | 154285945 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr5 | − | 27985294 | 27985301 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr5 | − | 38900915 | 38900922 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr5 | − | 96888685 | 96888692 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr5 | − | 140280335 | 140280342 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr6 | − | 41654336 | 41654343 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr6 | + | 135115924 | 135115931 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr7 | − | 19832423 | 19832430 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr7 | − | 28267081 | 28267088 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr7 | − | 56247766 | 56247773 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr7 | + | 103854192 | 103854199 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr7 | + | 139930480 | 139930487 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr8 | + | 125244431 | 125244438 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chrX | + | 39372754 | 39372761 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chrX | − | 39372850 | 39372857 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr11 | − | 95195402 | 95195409 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr11 | − | 96809404 | 96809411 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr11 | − | 96809460 | 96809467 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr11 | + | 115368094 | 115368101 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr12 | + | 41846460 | 41846467 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr13 | + | 59915840 | 59915847 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr13 | + | 96735288 | 96735295 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr14 | + | 61273048 | 61273055 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr14 | + | 69923064 | 69923071 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr15 | + | 38999432 | 38999439 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr15 | − | 66969382 | 66969389 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr15 | − | 91082700 | 91082707 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr17 | + | 87913345 | 87913352 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | + | 32702254 | 32702261 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | − | 32702283 | 32702290 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | − | 32716545 | 32716552 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | − | 61379975 | 61379982 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | − | 62325910 | 62325917 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | + | 62326283 | 62326290 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr18 | − | 85054516 | 85054523 | 4.79e-05 | 0.208 | CTGATAAG |
2 | chr2 | + | 130961728 | 130961735 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr2 | − | 130961816 | 130961823 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr3 | − | 100351583 | 100351590 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr3 | − | 104477762 | 104477769 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr4 | + | 46420052 | 46420059 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr5 | + | 33616512 | 33616519 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr5 | + | 97380870 | 97380877 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr5 | + | 129513384 | 129513391 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr5 | + | 144580013 | 144580020 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr6 | + | 57695593 | 57695600 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr6 | + | 86027950 | 86027957 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr6 | + | 146179217 | 146179224 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr7 | + | 106743090 | 106743097 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr7 | − | 134369324 | 134369331 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr7 | − | 139930666 | 139930673 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr8 | − | 3522487 | 3522494 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr8 | + | 83024311 | 83024318 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr8 | − | 87495103 | 87495110 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr8 | − | 122895830 | 122895837 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr9 | + | 40980714 | 40980721 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chrX | + | 146984377 | 146984384 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr10 | + | 93585738 | 93585745 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr11 | + | 68709971 | 68709978 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr13 | − | 94151422 | 94151429 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr14 | + | 71023921 | 71023928 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr15 | − | 36250892 | 36250899 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr16 | − | 8687079 | 8687086 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr17 | + | 5112287 | 5112294 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr17 | − | 43466888 | 43466895 | 6.39e-05 | 0.233 | GTGATAAG |
2 | chr1 | + | 169323195 | 169323202 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr2 | − | 25742927 | 25742934 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr2 | + | 25869441 | 25869448 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr2 | + | 103798093 | 103798100 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr2 | + | 131039972 | 131039979 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr2 | − | 180447126 | 180447133 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr3 | + | 107899731 | 107899738 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr4 | − | 76585121 | 76585128 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr5 | − | 28369364 | 28369371 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr5 | + | 33375033 | 33375040 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr5 | − | 77087406 | 77087413 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr5 | + | 121049840 | 121049847 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr6 | + | 38861079 | 38861086 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr6 | + | 38874311 | 38874318 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr6 | + | 120124683 | 120124690 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 16987564 | 16987571 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 28266986 | 28266993 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | − | 28320568 | 28320575 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 36133146 | 36133153 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 87847657 | 87847664 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 135432720 | 135432727 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr7 | + | 138568665 | 138568672 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr8 | − | 126512744 | 126512751 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr9 | − | 42910168 | 42910175 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr9 | − | 98390191 | 98390198 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr9 | + | 118957709 | 118957716 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chrX | + | 68727678 | 68727685 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chrX | − | 68727825 | 68727832 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr10 | + | 60586067 | 60586074 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr10 | + | 126642619 | 126642626 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr11 | − | 87539831 | 87539838 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr11 | − | 87563780 | 87563787 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr11 | + | 95661880 | 95661887 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr11 | − | 97307503 | 97307510 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr12 | − | 70884783 | 70884790 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr13 | + | 54346113 | 54346120 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr13 | + | 112447259 | 112447266 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr15 | + | 34829948 | 34829955 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr15 | + | 56455244 | 56455251 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr15 | − | 62052574 | 62052581 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr16 | − | 12052260 | 12052267 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr16 | − | 91353149 | 91353156 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr17 | − | 26651606 | 26651613 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr17 | − | 29584356 | 29584363 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr17 | − | 43466930 | 43466937 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr18 | + | 62326110 | 62326117 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr18 | − | 65888375 | 65888382 | 8.06e-05 | 0.233 | AAGATAAG |
2 | chr1 | + | 36111463 | 36111470 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr1 | + | 36976658 | 36976665 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr1 | − | 88057085 | 88057092 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr1 | + | 157198976 | 157198983 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr1 | − | 183078941 | 183078948 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr2 | − | 52304718 | 52304725 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr3 | + | 51034554 | 51034561 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr3 | − | 154291677 | 154291684 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr4 | − | 43977292 | 43977299 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr4 | + | 46610203 | 46610210 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr4 | − | 124283654 | 124283661 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr4 | − | 134538017 | 134538024 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr5 | − | 45951789 | 45951796 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr5 | + | 97380737 | 97380744 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr5 | − | 140488385 | 140488392 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr6 | − | 86027977 | 86027984 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr7 | + | 28233942 | 28233949 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr7 | + | 106951943 | 106951950 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr7 | − | 111007646 | 111007653 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr8 | − | 87494985 | 87494992 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr8 | + | 122895787 | 122895794 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr10 | − | 25440471 | 25440478 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr10 | + | 57527851 | 57527858 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr10 | − | 59256089 | 59256096 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr11 | + | 116481689 | 116481696 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr12 | + | 27136183 | 27136190 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr13 | + | 74873453 | 74873460 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr15 | − | 56455284 | 56455291 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr17 | − | 5112243 | 5112250 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr17 | + | 84179851 | 84179858 | 9.74e-05 | 0.247 | CAGATAAA |
2 | chr19 | − | 4047026 | 4047033 | 9.74e-05 | 0.247 | CAGATAAA |
Command line:
/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_2 --bgfile memechip_example_output_files/background --motif 2 memechip_example_output_files/meme_out/meme.xml memechip_example_output_files/sample-dna-Klf1.fa
Settings:
output directory = memechip_example_output_files/fimo_out_2 | MEME file name = memechip_example_output_files/meme_out/meme.xml | sequence file name = memechip_example_output_files/sample-dna-Klf1.fa |
background file name = memechip_example_output_files/background | allow clobber = true | compute q-values = true |
parse genomic coord. = true | text only = false | scan both strands = true |
max sequence length = 250000000 | output threshold = 0.0001 | threshold type = p-value |
max stored scores = 100000 | pseudocount = 0.1 | verbosity = 1 |
selected motif = 2 |
This information can be useful in the event you wish to report a problem with the FIMO software.