getsize

Usage:

getsize <sequences> [options]

Description

The program getsize prints statistics about the FASTA sequences.

Input

Sequences

A file in FASTA format. If the filename is given as "-", then the program reads from standard input.

Output

Writes statistics about the sequences to standard output.

Options

Option Parameter Description Default Behaviour
General Options
-codons  Print frame 0 codon usage.
-dna  Print DNA frequencies in background file format.
-f  Print letter frequences.
-ft  Print letter frequences in a LaTex table.
-l  Just print the length of each sequence.
-f  Do not print warnings about duplicate sequences.
-prot  Print protein frequencies in background file format.
-x  Translate DNA in 6 frames.