Database and Motifs | High-scoring Motif Occurrences | Debugging Information |
FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE
memechip_example_output_files/sample-dna-Klf1.fa
Database contains
904
sequences,
452000
residues
MOTIFS JASPAR_CORE_2009.meme (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
MA0001.1 | 10 | CCATAAATAG |
MA0002.1 | 11 | TATTGTGGTTA |
MA0002.2 | 11 | GTCTGTGGTTT |
MA0003.1 | 9 | GCCCGGGGG |
MA0004.1 | 6 | CACGTG |
MA0005.1 | 11 | CCAAATTTGGT |
MA0006.1 | 6 | TGCGTG |
MA0007.1 | 22 | ATAAGAACATCGTGTACCCGCC |
MA0008.1 | 8 | CAATTATT |
MA0009.1 | 11 | CTAGGTGTGAA |
MA0010.1 | 14 | GTAATAAACAAATC |
MA0011.1 | 8 | TACTATTT |
MA0012.1 | 11 | TAAACTAAAAG |
MA0013.1 | 11 | TAGTAAACAAA |
MA0014.1 | 20 | AGAGCACTGAAGCGTAACGG |
MA0015.1 | 10 | GTATATATAC |
MA0016.1 | 10 | GGGGTCACGG |
MA0017.1 | 14 | TGACCTTTGAACCT |
MA0018.1 | 12 | CCTGGTGACGTC |
MA0018.2 | 8 | TGACGTCA |
MA0019.1 | 12 | AGATGCAATCCC |
MA0020.1 | 6 | AAAGCA |
MA0021.1 | 6 | AAAGCG |
MA0022.1 | 12 | GGGGTTTTTCCG |
MA0023.1 | 10 | GGGGTTTTCC |
MA0024.1 | 8 | TTTGGCGC |
MA0025.1 | 11 | TTATGTAACAT |
MA0026.1 | 7 | CCGGAAG |
MA0027.1 | 11 | AAGTAGTGTTC |
MA0028.1 | 10 | GAGCCGGAAG |
MA0029.1 | 14 | AAGATAAGATAATA |
MA0030.1 | 14 | CAAACGTAAACAAT |
MA0031.1 | 8 | GTAAACAT |
MA0032.1 | 8 | GGTAAGTA |
MA0033.1 | 8 | TATACATA |
MA0034.1 | 10 | GACAACCGCC |
MA0035.1 | 6 | GGATGG |
MA0035.2 | 11 | ACAGATAAGAA |
MA0036.1 | 5 | GGATA |
MA0037.1 | 6 | AGATAG |
MA0038.1 | 10 | CAAATCACTG |
MA0039.1 | 10 | TAAAGGAAGG |
MA0039.2 | 10 | TGGGTGGGGC |
MA0040.1 | 11 | TATTGTTTATT |
MA0041.1 | 12 | GAATGTTTGTTT |
MA0042.1 | 12 | GGATGTTTGTTT |
MA0043.1 | 12 | GGTTACGTAATT |
MA0044.1 | 9 | GTTGTATTC |
MA00445.1 | 11 | TCCATTGTTCT |
MA0045.1 | 16 | CAACAAATGGAAAAAC |
MA0046.1 | 14 | GGTTAATAATTAAC |
MA0047.1 | 12 | CAATATTTACTT |
MA0047.2 | 12 | TGTTTACTTAGG |
MA0048.1 | 12 | GCGCAGCTGCGT |
MA0049.1 | 10 | GCATAAAAAA |
MA0050.1 | 12 | GAAAGTGAAACC |
MA0051.1 | 18 | GGAAAGTGAAAGCAAAAC |
MA0052.1 | 10 | CTATTTATAG |
MA0053.1 | 5 | AAAGC |
MA0054.1 | 9 | TAACCGTTT |
MA0055.1 | 12 | CAGCAGCTGCTG |
MA0056.1 | 6 | TGGGGA |
MA0057.1 | 10 | GTAGGGGGAA |
MA0058.1 | 10 | AACCACGTGA |
MA0059.1 | 11 | GAGCACGTGGT |
MA0060.1 | 16 | CTCAGCCAATCAGCGC |
MA0061.1 | 10 | GGGAATTTCC |
MA0062.1 | 10 | ACCGGAAGAG |
MA0062.2 | 11 | CCGGAAGTGGC |
MA0063.1 | 7 | TTAATTG |
MA0064.1 | 5 | AAAGC |
MA0065.1 | 20 | TTAGGGGTCAAAGGTCATCT |
MA0065.2 | 15 | GTAGGGCAAAGGTCA |
MA0066.1 | 20 | GTAGGTCACGGTGACCTACT |
MA0067.1 | 8 | AGTCACGG |
MA0068.1 | 30 | GAAAAATTTCCAATACTCCACTCCCCCCCC |
MA0069.1 | 14 | TTCACGCATGAGTT |
MA0070.1 | 12 | CCATCAATCAAA |
MA0071.1 | 10 | ATCAAGGTCA |
MA0072.1 | 14 | TATAAGTAGGTCAA |
MA0073.1 | 20 | CCCCAAACCACCCCCCCCCA |
MA0074.1 | 15 | GGGTCATCGAGTTCA |
MA0075.1 | 5 | AATTA |
MA0076.1 | 9 | ACCGGAAGT |
MA0077.1 | 9 | GAACAATGG |
MA0078.1 | 9 | TTCATTGTC |
MA0079.1 | 10 | GGGGCGGGGT |
MA0079.2 | 10 | CCCCGCCCCC |
MA0080.1 | 6 | CGGAAG |
MA0080.2 | 7 | AGGAAGT |
MA0081.1 | 7 | AGAGGAA |
MA0082.1 | 14 | CCAAAAATGGAAAT |
MA0083.1 | 12 | GCCCATATATGG |
MA0084.1 | 9 | GTAAACAAT |
MA0085.1 | 16 | TTGTGGGAAACGAGAT |
MA0086.1 | 6 | CAGGTG |
MA0087.1 | 7 | TAACAAT |
MA0088.1 | 20 | GATTTCCCATAATGCCTTGC |
MA0089.1 | 6 | CATGAC |
MA0090.1 | 12 | CACATTCCTCCG |
MA0091.1 | 12 | CGACCATCTGTT |
MA0092.1 | 10 | GGTCTGGCAT |
MA0093.1 | 7 | CACGTGG |
MA0094.1 | 4 | TAAT |
MA0094.2 | 8 | TTTAATTA |
MA0095.1 | 6 | GCCATC |
MA0096.1 | 7 | ATGACGT |
MA0097.1 | 12 | GATGACGTGGCC |
MA0098.1 | 6 | TTTCCG |
MA0099.1 | 8 | GTGAGTCA |
MA0099.2 | 7 | TGACTCA |
MA0100.1 | 8 | GGCCGTTG |
MA0101.1 | 10 | GGGGATTTCC |
MA0102.1 | 12 | TTTCGCAATCTT |
MA0102.2 | 9 | TTTCGCAAT |
MA0103.1 | 6 | CACCTG |
MA0104.1 | 6 | CACGTG |
MA0104.2 | 10 | CGCACGTGGC |
MA0105.1 | 11 | GGGGATTCCCC |
MA0106.1 | 20 | CCGGACATGCCCGGGCATGT |
MA0107.1 | 10 | GGGAATTTCC |
MA0108.1 | 15 | GTATAAAAGGCGGGG |
MA0108.2 | 15 | GTATAAAAGGCGGGG |
MA0109.1 | 10 | AACCTTATAT |
MA0110.1 | 9 | CCAATTATT |
MA0111.1 | 11 | AGGGTAACAGC |
MA0112.1 | 18 | CCAGGTCACCGTGACCCC |
MA0112.2 | 20 | GGCCCAGGTCACCCTGACCT |
MA0113.1 | 18 | GGGAACATTATGTCCTAT |
MA0114.1 | 13 | AGGCCAAAGGTCA |
MA0115.1 | 17 | AAAGGTCAAAGGTCAAC |
MA0116.1 | 15 | GGCACCCAGGGGTGC |
MA0117.1 | 8 | GCTGACGG |
MA0118.1 | 9 | TGGGGGTTC |
MA0119.1 | 14 | TGGCACCATGCCAA |
MA0120.1 | 12 | TTTTCCTTTTCG |
MA0121.1 | 8 | AGATCCGC |
MA0122.1 | 9 | TTAAGTGGA |
MA0123.1 | 10 | CGGTGCCCCC |
MA0124.1 | 7 | ATACTTA |
MA0125.1 | 8 | TAATTGGT |
MA0126.1 | 9 | AGTAACAGT |
MA0127.1 | 10 | ACTTCTTATT |
MA0128.1 | 8 | ACACGTGG |
MA0129.1 | 7 | TACGTCA |
MA0130.1 | 6 | ATCCAC |
MA0131.1 | 10 | TAACGTCCGC |
MA0132.1 | 6 | CTAATT |
MA0133.1 | 7 | ACAACAC |
MA0135.1 | 13 | AAATTAATTAATC |
MA0136.1 | 9 | TACTTCCTT |
MA0137.1 | 14 | GGAAAATGAAACTG |
MA0137.2 | 15 | CATTTCCCGGAAACC |
MA0138.1 | 19 | GCGCTGTCCATGGTGCTGA |
MA0138.2 | 21 | TTCAGCACCATGGACAGCGCC |
MA0139.1 | 19 | TGGCCACCAGGGGGCGCTA |
MA0140.1 | 18 | CTGGTGGGGACAGATAAG |
MA0141.1 | 12 | AGCTCAAGGTCA |
MA0142.1 | 15 | CTTTGTTATGCAAAT |
MA0143.1 | 15 | CCTTTGTTATGCAAA |
MA0144.1 | 10 | TTCCAGGAAG |
MA0145.1 | 14 | CCAGTTCAAACCAG |
MA0146.1 | 14 | GGGGCCGAGGCCTG |
MA0147.1 | 10 | CGCACGTGGC |
MA0148.1 | 11 | TGTTTACTTTG |
MA0149.1 | 18 | GGAAGGAAGGAAGGAAGG |
MA0150.1 | 11 | ATGACTCAGCA |
MA0151.1 | 6 | ATTAAA |
MA0152.1 | 7 | TTTTCCA |
MA0153.1 | 12 | TTAATATTTAAC |
MA0154.1 | 10 | ACCCAAGGGA |
MA0155.1 | 12 | TGTCAGGGGGCG |
MA0156.1 | 8 | CAGGAAAT |
MA0157.1 | 8 | TGTAAACA |
MA0158.1 | 8 | CACTAATT |
MA0159.1 | 17 | AGGTCATGGAGAGGTCA |
MA0160.1 | 8 | AAGGTCAC |
MA0161.1 | 6 | TTGGCA |
MA0162.1 | 11 | TGCGTGGGCGT |
MA0163.1 | 14 | GGGGCCCAAGGGGG |
MA0164.1 | 7 | CAAGCTT |
MA0165.1 | 7 | TTTATGA |
MA0166.1 | 7 | TTAATGA |
MA0167.1 | 7 | TTAATTA |
MA0168.1 | 7 | TTAATTG |
MA0169.1 | 7 | TTAATTG |
MA0170.1 | 7 | TTAATTA |
MA0171.1 | 7 | TTAATTG |
MA0172.1 | 7 | TTAATTA |
MA0173.1 | 7 | TTAACAT |
MA0174.1 | 7 | TTTATTA |
MA0175.1 | 7 | TTAATTG |
MA0176.1 | 7 | TTAATTA |
MA0177.1 | 7 | TTAATTA |
MA0178.1 | 7 | TTAATTA |
MA0179.1 | 7 | TTAATTA |
MA0180.1 | 9 | TTTAATTAG |
MA0181.1 | 7 | TTAATTA |
MA0182.1 | 7 | TTTATTA |
MA0183.1 | 8 | TTTAATTA |
MA0184.1 | 7 | CTAATTA |
MA0185.1 | 6 | TTCGTG |
MA0186.1 | 7 | TTAATGA |
MA0187.1 | 7 | TAATTAC |
MA0188.1 | 7 | CCAATTA |
MA0189.1 | 7 | TTAATTA |
MA0190.1 | 6 | TAATCC |
MA0191.1 | 7 | TTAATTA |
MA0192.1 | 7 | TTAATTG |
MA0193.1 | 7 | CTACCAA |
MA0194.1 | 7 | TTAATTA |
MA0195.1 | 7 | TTAATTA |
MA0196.1 | 7 | TTAATTG |
MA0197.1 | 8 | TTTAATTA |
MA0198.1 | 7 | CTAATTA |
MA0199.1 | 5 | TGATA |
MA0200.1 | 7 | CTAATTA |
MA0201.1 | 7 | TTAATCC |
MA0202.1 | 7 | CTAATTA |
MA0203.1 | 7 | TTAATGA |
MA0204.1 | 6 | TGATAC |
MA0205.1 | 10 | TTGCTCTCTC |
MA0206.1 | 7 | TTAATTA |
MA0207.1 | 6 | TGACAG |
MA0208.1 | 7 | TAATTAA |
MA0209.1 | 7 | CTAATTA |
MA0210.1 | 5 | TAACA |
MA0211.1 | 7 | TTAAGTG |
MA0212.1 | 6 | TAATCC |
MA0213.1 | 8 | CTGGCGCC |
MA0214.1 | 7 | TTAATTG |
MA0215.1 | 7 | TTAATGA |
MA0216.1 | 7 | TTTATTG |
MA0217.1 | 5 | TAACA |
MA0218.1 | 6 | TTGAAC |
MA0219.1 | 7 | TTAATGA |
MA0220.1 | 7 | TTAATTA |
MA0221.1 | 7 | CTAATGA |
MA0222.1 | 8 | TTTTGACA |
MA0223.1 | 7 | GTAATTA |
MA0224.1 | 7 | GTAATTA |
MA0225.1 | 7 | TTAATTA |
MA0226.1 | 7 | TTAATTA |
MA0227.1 | 6 | TGACAG |
MA0228.1 | 7 | CTAATTA |
MA0229.1 | 8 | TCTAATTA |
MA0230.1 | 7 | TTAATTA |
MA0231.1 | 6 | TAACTA |
MA0232.1 | 6 | TAATTA |
MA0233.1 | 5 | AAACA |
MA0234.1 | 6 | TAATCC |
MA0235.1 | 7 | TTGATTT |
MA0236.1 | 7 | TTAATTA |
MA0237.1 | 8 | CTTTGATC |
MA0238.1 | 7 | TTAATTA |
MA0239.1 | 9 | AGTAACAGT |
MA0240.1 | 7 | TTAATTA |
MA0241.1 | 7 | CTAATTA |
MA0242.1 | 9 | TAACCGCAA |
MA0243.1 | 12 | GACATTCCTCGA |
MA0244.1 | 8 | ATTGCAAA |
MA0245.1 | 7 | TTAATTA |
MA0246.1 | 6 | TGATAC |
MA0247.1 | 8 | CTCAAGTG |
MA0248.1 | 7 | TTAATTG |
MA0249.1 | 12 | TCGCATATGTTG |
MA0250.1 | 7 | TTAATTG |
MA0251.1 | 7 | TTAATTA |
MA0252.1 | 6 | TGACAG |
MA0253.1 | 9 | TTTCAAGTG |
MA0254.1 | 6 | TATGCA |
MA0255.1 | 10 | TTGAGTGATT |
MA0256.1 | 7 | CTAATGA |
MA0257.1 | 7 | TTAATTA |
MA0258.1 | 18 | CAAGGTCACGGTGACCTG |
MA0259.1 | 8 | GGACGTGC |
MA0260.1 | 6 | GAAACC |
MA0261.1 | 6 | GAACAC |
MA0262.1 | 13 | AATGTTGCGAATT |
MA0263.1 | 14 | ATTGGCTTCGTTAA |
MA0264.1 | 11 | ACCACTTGAAA |
MA0265.1 | 16 | TCGTATAAAGTGATAT |
MA0266.1 | 7 | CTCTAGA |
MA0267.1 | 7 | ACCAGCA |
MA0268.1 | 7 | ACCCCAC |
MA0269.1 | 21 | TTACATATTGCACCCGATTGG |
MA0270.1 | 8 | CACACCCC |
MA0271.1 | 6 | AGACGC |
MA0272.1 | 8 | GTGACTCT |
MA0273.1 | 21 | GATAATTCTCGGCAAGTATGT |
MA0274.1 | 8 | ACTTGAAT |
MA0275.1 | 6 | CCGGAA |
MA0276.1 | 10 | CCGGATCGGG |
MA0277.1 | 9 | AAAAAGAAA |
MA0278.1 | 21 | GCACAGCCAGAGTCAAGTCAA |
MA0279.1 | 10 | ATTAGTAAGC |
MA0280.1 | 6 | CCGGAA |
MA0281.1 | 8 | GCACGTGA |
MA0282.1 | 8 | CTCGGAAA |
MA0283.1 | 8 | GGCGGAGA |
MA0284.1 | 10 | TTACGTAATC |
MA0285.1 | 9 | CTAAGCCAC |
MA0286.1 | 9 | ATGACGTAA |
MA0287.1 | 11 | CAGCAAAAATG |
MA0288.1 | 9 | TGACACATT |
MA0289.1 | 7 | CGATAAG |
MA0290.1 | 19 | AAAAGCCGCGGGCGGGATT |
MA0291.1 | 9 | AATGTGCGC |
MA0292.1 | 7 | CTCCGGA |
MA0293.1 | 11 | AAAGATCTAAA |
MA0294.1 | 9 | CGGAAAAAT |
MA0295.1 | 8 | GACGCAAA |
MA0296.1 | 20 | TGAATTGTAAACAAAGAGGA |
MA0297.1 | 7 | GTAAACA |
MA0298.1 | 6 | CTATCA |
MA0299.1 | 15 | CGGGGAACAGTACTC |
MA0300.1 | 8 | CCGATAAG |
MA0301.1 | 9 | AGATCTACA |
MA0302.1 | 11 | AAAGATCTAAA |
MA0303.1 | 21 | CAAGGGATGAGTCATACTTCA |
MA0304.1 | 8 | TGGAAGCC |
MA0305.1 | 7 | GCTTCCT |
MA0306.1 | 9 | ACCCCTAAA |
MA0307.1 | 5 | GATAA |
MA0308.1 | 21 | ATTAAAAAACTCCGGAGTATA |
MA0309.1 | 8 | TGATAAGA |
MA0310.1 | 8 | GACACGTG |
MA0311.1 | 5 | CGGAA |
MA0312.1 | 8 | CGGAGATA |
MA0313.1 | 5 | TTGGT |
MA0314.1 | 15 | TCTGATTGGTTCAGA |
MA0315.1 | 15 | ACCAATCAGAGGCGA |
MA0316.1 | 15 | TGGGATCTGATTGGT |
MA0317.1 | 8 | ATAAACAA |
MA0318.1 | 8 | CATGTAAT |
MA0319.1 | 8 | ATGGAACA |
MA0320.1 | 8 | CCGCCGAG |
MA0321.1 | 9 | GCATGTGAA |
MA0322.1 | 9 | GCATGTGAA |
MA0323.1 | 15 | AAGCCGGAAGCGGGG |
MA0324.1 | 10 | CCGTTACCGG |
MA0325.1 | 8 | CCGGAATT |
MA0326.1 | 8 | TTTGCTCA |
MA0327.1 | 7 | ACACAAT |
MA0328.1 | 9 | CATGTAATT |
MA0329.1 | 7 | ACGCGTA |
MA0330.1 | 7 | ACGCGTT |
MA0331.1 | 12 | CCCAATTAGGAA |
MA0332.1 | 6 | CTGTGG |
MA0333.1 | 9 | AGTGTGGCG |
MA0334.1 | 7 | CGCCACA |
MA0335.1 | 8 | AACTGTGG |
MA0336.1 | 21 | AGGACTATAGAACACTCTAAA |
MA0337.1 | 7 | CCCCCGC |
MA0338.1 | 7 | CCCCGCA |
MA0339.1 | 7 | CCCCGCA |
MA0340.1 | 6 | TAGGTA |
MA0341.1 | 5 | AGGGG |
MA0342.1 | 5 | AGGGG |
MA0343.1 | 21 | TTTCCGGCCACAAAAACGCAA |
MA0344.1 | 8 | GCCGGGGA |
MA0345.1 | 21 | ATGACCTATATATAAAAATGA |
MA0346.1 | 20 | TTTATTTATATATAATATGA |
MA0347.1 | 20 | CTAGATCAGGGTCCATCGCA |
MA0348.1 | 9 | TCGGAGATA |
MA0349.1 | 7 | CGAACCG |
MA0350.1 | 21 | AGGCACAGCTCATCGCGTTTT |
MA0351.1 | 21 | TTCTGCACCTCATCGCATCCT |
MA0352.1 | 8 | TCCGCGGA |
MA0353.1 | 8 | TCCGCGGA |
MA0354.1 | 8 | ACGGAGAT |
MA0355.1 | 10 | ACCTGCAGCA |
MA0356.1 | 6 | ATAATA |
MA0357.1 | 8 | GCACGTGC |
MA0358.1 | 8 | CCCGGGAA |
MA0359.1 | 10 | CACCCATACA |
MA0360.1 | 8 | TGCGGAAC |
MA0361.1 | 7 | CGGCCGA |
MA0362.1 | 7 | CTCGGGG |
MA0363.1 | 9 | GTTACCCGG |
MA0364.1 | 7 | CCCCTGA |
MA0365.1 | 8 | GGTTGCTA |
MA0366.1 | 5 | AGGGG |
MA0367.1 | 11 | AATTTTTCCGG |
MA0368.1 | 7 | CGCCAAG |
MA0369.1 | 18 | AGTTCTATAAATAGATTC |
MA0370.1 | 10 | TCCAAAGGAA |
MA0371.1 | 12 | TCCATTGTTCTC |
MA0372.1 | 8 | ACCCCTAA |
MA0373.1 | 7 | GGTGGCG |
MA0374.1 | 7 | CGCGCGG |
MA0375.1 | 8 | CGCGCGCG |
MA0376.1 | 20 | ATATTAGCACGTGCTTAGTC |
MA0377.1 | 21 | TAGAGAATAGAAGAAATAAAA |
MA0378.1 | 21 | ATTGAAAAAAATTTTCTACGG |
MA0379.1 | 5 | ATATA |
MA0380.1 | 7 | CTCCGGA |
MA0381.1 | 6 | GGCCAT |
MA0382.1 | 8 | ACGTAATG |
MA0383.1 | 21 | TTACCTATAATTAAATTAGCA |
MA0384.1 | 11 | TGGTAGCGCCG |
MA0385.1 | 11 | ACCTGCAGGCA |
MA0386.1 | 21 | GACTAGATATATATATTCGAT |
MA0387.1 | 10 | AATTAAAGAA |
MA0388.1 | 8 | GAAATCAA |
MA0389.1 | 8 | AGATCTAC |
MA0390.1 | 21 | GTCCAAAATTTTTCACTCTGG |
MA0391.1 | 7 | CTCGGAA |
MA0392.1 | 8 | CGGTGTTA |
MA0393.1 | 7 | TGAAACA |
MA0394.1 | 8 | TGCGGCGC |
MA0395.1 | 20 | TGATCGGCGCCGCACGACGA |
MA0396.1 | 9 | GCTAGCGCA |
MA0397.1 | 9 | GATAGCGCA |
MA0398.1 | 9 | AAAATTTTT |
MA0399.1 | 7 | CGCGGGG |
MA0400.1 | 20 | ATGATAAACTCCGAAAATTT |
MA0401.1 | 8 | ACGCGAAA |
MA0402.1 | 8 | TGCTGGTT |
MA0403.1 | 8 | AACCCTAA |
MA0404.1 | 8 | CGGATCCG |
MA0405.1 | 8 | GCGGACAT |
MA0406.1 | 8 | ACATTCCC |
MA0407.1 | 15 | GGAAACTCTAAGAAC |
MA0408.1 | 8 | CTGTCAAA |
MA0409.1 | 7 | CACGTGA |
MA0410.1 | 8 | CGGCGGGA |
MA0411.1 | 7 | TATACGA |
MA0412.1 | 13 | TCGGCGGCTAATT |
MA0413.1 | 20 | AAATTCCCCCTGAATTTGTG |
MA0414.1 | 7 | CTCGAGA |
MA0415.1 | 20 | ATTTGCTTACGTAAGCTCGT |
MA0416.1 | 8 | ATTACGTA |
MA0417.1 | 6 | AAGCAT |
MA0418.1 | 20 | GGTCTGATTACGTAAGCGAC |
MA0419.1 | 11 | ATTAGTAAGCA |
MA0420.1 | 8 | ACCGGAAC |
MA0421.1 | 10 | TTTACCCGGC |
MA0422.1 | 10 | CCGGAGATAA |
MA0423.1 | 9 | ACCCCTATT |
MA0424.1 | 8 | CTCCGGAA |
MA0425.1 | 14 | ACCCCACTTTTTTA |
MA0426.1 | 6 | TAATTG |
MA0427.1 | 11 | AGCTCCGGAGA |
MA0428.1 | 9 | AACGGAAAT |
MA0429.1 | 7 | CGGCCGA |
MA0430.1 | 8 | CCGGAGTT |
MA0431.1 | 9 | ACCCCGCAC |
MA0432.1 | 8 | TCGGAGAT |
MA0433.1 | 8 | TTAATTAA |
MA0434.1 | 9 | TGTAGATCA |
MA0435.1 | 20 | TGAAGACGTAAATCCTTACA |
MA0436.1 | 7 | CCCCACG |
MA0437.1 | 9 | ATTTCTCCG |
MA0438.1 | 8 | ACGGAAAT |
MA0439.1 | 11 | CTTATCTCCGC |
MA0440.1 | 15 | ACCTTAAAGGTCATG |
MA0441.1 | 9 | TTCCCCGCA |
MA0442.1 | 6 | CTTTGT |
MA0443.1 | 10 | AGGGGGCGGA |
MA0444.1 | 7 | TTAATTG |
MA0446.1 | 11 | TGTTTGCTTAA |
MA0447.1 | 10 | ATTACGTAAT |
MA0448.1 | 7 | TTAATTA |
MA0449.1 | 10 | GGCACGTGCC |
MA0450.1 | 9 | GGGGCGTGA |
MA0451.1 | 12 | AAACTAGAGCAC |
MA0452.1 | 11 | CAAAAGGGTTA |
MA0453.1 | 12 | TATGCAAATTAG |
MA0454.1 | 11 | AACAGTAGCAG |
MA0455.1 | 7 | CTAATTA |
MA0456.1 | 12 | GACCCCCCGCTG |
MA0457.1 | 7 | TTAATTA |
MA0458.1 | 11 | TTGTTTACATT |
MA0459.1 | 10 | AAAAGTCAAA |
MA0460.1 | 9 | AAGGATAAT |
Random model letter frequencies
(from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|
MA0450.1 | chr5 | + | 77087386 | 77087394 | 3.37e-06 | 0.358 | GGGGCGTGA |
MA0450.1 | chr5 | + | 104484087 | 104484095 | 6.91e-06 | 0.358 | TGGGCGTGA |
MA0450.1 | chr8 | + | 73222366 | 73222374 | 6.91e-06 | 0.358 | TGGGCGTGA |
MA0450.1 | chr11 | + | 87563806 | 87563814 | 6.91e-06 | 0.358 | TGGGCGTGA |
MA0450.1 | chr11 | + | 101177070 | 101177078 | 6.91e-06 | 0.358 | TGGGCGTGA |
MA0450.1 | chr9 | − | 44096812 | 44096820 | 1.05e-05 | 0.358 | GAGGCGTGA |
MA0450.1 | chr1 | − | 137838458 | 137838466 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr3 | − | 100351631 | 100351639 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr4 | − | 153400910 | 153400918 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr5 | − | 17335146 | 17335154 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr5 | − | 87233128 | 87233136 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr6 | − | 57653331 | 57653339 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr6 | − | 57653561 | 57653569 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr12 | + | 112506070 | 112506078 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr13 | − | 57679402 | 57679410 | 1.77e-05 | 0.358 | AGGGCGTGA |
MA0450.1 | chr8 | + | 73222351 | 73222359 | 2.09e-05 | 0.358 | GGGGCGTGC |
MA0450.1 | chr9 | + | 59598234 | 59598242 | 2.09e-05 | 0.358 | GGGGCGTGC |
MA0450.1 | chr11 | + | 60988840 | 60988848 | 2.09e-05 | 0.358 | GGGGCGTGC |
MA0450.1 | chr19 | − | 4558682 | 4558690 | 2.09e-05 | 0.358 | GGGGCGTGC |
MA0450.1 | chr19 | − | 8797827 | 8797835 | 2.09e-05 | 0.358 | GGGGCGTGC |
MA0450.1 | chr5 | − | 45951820 | 45951828 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr6 | + | 144850518 | 144850526 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr7 | − | 6315746 | 6315754 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr7 | − | 6315932 | 6315940 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr12 | + | 41693490 | 41693498 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr12 | + | 80012974 | 80012982 | 2.43e-05 | 0.358 | GGGGCGTGT |
MA0450.1 | chr1 | + | 134941764 | 134941772 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr4 | − | 118863368 | 118863376 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr5 | + | 87233106 | 87233114 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr7 | − | 6315696 | 6315704 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr7 | + | 28266781 | 28266789 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr9 | + | 59598212 | 59598220 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr9 | − | 107198874 | 107198882 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr12 | − | 85792234 | 85792242 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr12 | − | 113882732 | 113882740 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr14 | + | 63729453 | 63729461 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr15 | + | 85935992 | 85936000 | 2.75e-05 | 0.358 | GGGGCGGGA |
MA0450.1 | chr4 | + | 106351700 | 106351708 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr5 | − | 118933726 | 118933734 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr6 | + | 144850529 | 144850537 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr7 | − | 20250779 | 20250787 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr7 | − | 26004938 | 26004946 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr8 | + | 73222378 | 73222386 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr9 | + | 21069704 | 21069712 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr9 | + | 66764131 | 66764139 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr9 | + | 108710130 | 108710138 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr11 | − | 57590823 | 57590831 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr11 | + | 117187431 | 117187439 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr12 | + | 85792406 | 85792414 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr17 | + | 12397940 | 12397948 | 3.07e-05 | 0.358 | GGGGCGTGG |
MA0450.1 | chr3 | − | 60589250 | 60589258 | 3.41e-05 | 0.358 | TGGGCGTGC |
MA0450.1 | chr4 | − | 118293358 | 118293366 | 3.41e-05 | 0.358 | TGGGCGTGC |
MA0450.1 | chr1 | − | 122156001 | 122156009 | 3.76e-05 | 0.358 | TGGGCGTGT |
MA0450.1 | chr15 | + | 36250919 | 36250927 | 3.76e-05 | 0.358 | TGGGCGTGT |
MA0450.1 | chr3 | − | 151777921 | 151777929 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr4 | − | 44017274 | 44017282 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr8 | + | 126512578 | 126512586 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr9 | − | 107198977 | 107198985 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr11 | − | 50038247 | 50038255 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr11 | − | 104890512 | 104890520 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr14 | − | 63796725 | 63796733 | 4.1e-05 | 0.358 | TGGGCGGGA |
MA0450.1 | chr1 | − | 173211167 | 173211175 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr2 | − | 157978584 | 157978592 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr4 | + | 153535368 | 153535376 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr7 | + | 38970426 | 38970434 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr7 | + | 103854078 | 103854086 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr8 | + | 73222590 | 73222598 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr9 | + | 21069585 | 21069593 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr9 | − | 70682771 | 70682779 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr10 | − | 41632329 | 41632337 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr11 | + | 60989092 | 60989100 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr11 | + | 115374879 | 115374887 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr11 | + | 117642327 | 117642335 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr12 | − | 78031386 | 78031394 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr12 | − | 85791959 | 85791967 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr15 | − | 83139351 | 83139359 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr17 | + | 28946364 | 28946372 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr18 | − | 13094711 | 13094719 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr18 | − | 23982762 | 23982770 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr19 | − | 45865286 | 45865294 | 4.44e-05 | 0.358 | TGGGCGTGG |
MA0450.1 | chr2 | − | 130961608 | 130961616 | 4.81e-05 | 0.383 | AAGGCGTGA |
MA0450.1 | chr1 | − | 36977347 | 36977355 | 5.15e-05 | 0.4 | GAGGCGTGC |
MA0450.1 | chr13 | + | 114606063 | 114606071 | 5.15e-05 | 0.4 | GAGGCGTGC |
MA0450.1 | chr4 | − | 117504728 | 117504736 | 5.5e-05 | 0.413 | GAGGCGTGT |
MA0450.1 | chr9 | + | 66351938 | 66351946 | 5.5e-05 | 0.413 | GAGGCGTGT |
MA0450.1 | chr16 | − | 91353046 | 91353054 | 5.5e-05 | 0.413 | GAGGCGTGT |
MA0450.1 | chr11 | + | 101177190 | 101177198 | 5.84e-05 | 0.423 | GAGGCGGGA |
MA0450.1 | chr17 | − | 87913117 | 87913125 | 5.84e-05 | 0.423 | GAGGCGGGA |
MA0450.1 | chr19 | + | 8994838 | 8994846 | 5.84e-05 | 0.423 | GAGGCGGGA |
MA0450.1 | chr19 | + | 5727127 | 5727135 | 6.19e-05 | 0.439 | GGGGCGTTA |
MA0450.1 | chr19 | − | 18835720 | 18835728 | 6.19e-05 | 0.439 | GGGGCGTTA |
MA0450.1 | chr7 | − | 135432809 | 135432817 | 6.53e-05 | 0.458 | GAGGCGTGG |
MA0450.1 | chr5 | − | 139858393 | 139858401 | 6.89e-05 | 0.461 | TAGGCGTGC |
MA0450.1 | chr7 | + | 56247826 | 56247834 | 6.89e-05 | 0.461 | TAGGCGTGC |
MA0450.1 | chr4 | + | 117601395 | 117601403 | 7.26e-05 | 0.461 | TAGGCGTGT |
MA0450.1 | chr5 | − | 121049862 | 121049870 | 7.26e-05 | 0.461 | TAGGCGTGT |
MA0450.1 | chr9 | + | 59598589 | 59598597 | 7.26e-05 | 0.461 | TAGGCGTGT |
MA0450.1 | chr11 | + | 117642112 | 117642120 | 7.26e-05 | 0.461 | TAGGCGTGT |
MA0450.1 | chr4 | + | 41334965 | 41334973 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr5 | + | 96888806 | 96888814 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr7 | − | 56247807 | 56247815 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr8 | − | 24164667 | 24164675 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr9 | − | 24715266 | 24715274 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr18 | − | 60666932 | 60666940 | 7.59e-05 | 0.461 | AGGGCGTGC |
MA0450.1 | chr1 | − | 9738506 | 9738514 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr1 | − | 88057279 | 88057287 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr5 | + | 129723570 | 129723578 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr9 | − | 114376098 | 114376106 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr10 | − | 60612628 | 60612636 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr11 | + | 4577431 | 4577439 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr11 | + | 99087796 | 99087804 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr11 | + | 116481486 | 116481494 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr12 | + | 84938334 | 84938342 | 8.3e-05 | 0.461 | TAGGCGGGA |
MA0450.1 | chr13 | − | 45622822 | 45622830 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr15 | − | 98886792 | 98886800 | 8.3e-05 | 0.461 | TAGGCGGGA |
MA0450.1 | chr17 | + | 47673135 | 47673143 | 8.3e-05 | 0.461 | AGGGCGTGT |
MA0450.1 | chr1 | − | 134264197 | 134264205 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr5 | + | 97380857 | 97380865 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr6 | + | 136416935 | 136416943 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr11 | − | 69714505 | 69714513 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr14 | − | 63796736 | 63796744 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr19 | + | 55358653 | 55358661 | 9.01e-05 | 0.472 | AGGGCGGGA |
MA0450.1 | chr7 | + | 16685384 | 16685392 | 9.37e-05 | 0.472 | TAGGCGTGG |
MA0450.1 | chr18 | − | 32702312 | 32702320 | 9.37e-05 | 0.472 | TAGGCGTGG |
MA0450.1 | chr1 | + | 136638953 | 136638961 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr4 | − | 34497808 | 34497816 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr4 | − | 132806727 | 132806735 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr7 | − | 29610323 | 29610331 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr8 | + | 125244389 | 125244397 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr9 | + | 44773789 | 44773797 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr10 | − | 128184999 | 128185007 | 9.67e-05 | 0.472 | GGGGCGGGC |
MA0450.1 | chr12 | − | 90222637 | 90222645 | 9.67e-05 | 0.472 | GGGGCGGGC |
Command line:
/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_3 --bgfile memechip_example_output_files/background --motif MA0450.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa
Settings:
output directory = memechip_example_output_files/fimo_out_3 | MEME file name = JASPAR_CORE_2009.meme | sequence file name = memechip_example_output_files/sample-dna-Klf1.fa |
background file name = memechip_example_output_files/background | allow clobber = true | compute q-values = true |
parse genomic coord. = true | text only = false | scan both strands = true |
max sequence length = 250000000 | output threshold = 0.0001 | threshold type = p-value |
max stored scores = 100000 | pseudocount = 0.1 | verbosity = 1 |
selected motif = MA0450.1 |
This information can be useful in the event you wish to report a problem with the FIMO software.