For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.
If you use MCAST in your research please cite the following paper:
Timothy Bailey and William Stafford Noble,
"Searching for statistically significant regulatory modules",
Bioinformatics (Proceedings of the European Conference on Computational Biology),
19(Suppl. 2):ii16-ii25, 2003.
[full text]
Inputs |
Top |
The sequence database "crp0.fna" was supplied to MCAST.
Sequence Count | Residue Count |
---|---|
18 | 1890 |
The following motifs were supplied to MCAST from "crp0.meme"
Motif | Width | Best possible match | Best possible RC match |
---|---|---|---|
1 | 18 | AATTGTGACGTTGTTCAC | GTGATCTACGTCACAATT |
2 | 8 | CGGTGGGG | CCCCGCCG |
Search Results |
Top |
MCAST could not evaluate statistics for the match scores. All the matches found by MCAST are shown below, but no signficance statistics are provided.
Motif 1 |
Motif 2 |
Sequence | Start | Stop | Score | p-value | E-value | q-value | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
tdc | 82 | 100 | 4.60501 | nan | nan | nan | |||||||||||||||||||
↧ | +
-
|
uxu1 |
17 |
35 |
7.10103 |
nan |
nan |
nan |
↧ |
|