MEME Suite 4.11.4 Patches

This file gives notes and installation instructions for patches of the MEME Suite version 4.11.3. For new installations you can skip the patching steps by using the pre-patched distribution.

The patches should always be installed in order because later patches may depend on changes made in earlier patches.

If you're patching a completely unpatched MEME install then all the patches can be installed by:

1. Downloading all the patch files (linked above) to the root of the MEME Suite source distribution
2. Changing your working directory to the root of the MEME Suite source distribution
3. Running the command patch -p1 -i patch_4.11.4_1
4. If nothing went wrong then install the changes with the command make install

Contact meme@nbcr.net if you run into problems.

Patch 1

This patch fixes the following:

• Bug fixes
  • Fixed bug in Tomtom that disabled the -png and -eps options.
  • Fixed bug in fasta-hamming-enrich with non-complementable alphabets.
• Enhancements
  • Improved documentation on background file inputs for AME, MEME, MEME-ChIP, MAST, Centrimo, and Tomtom.
  • Added the reverse complement as the alternate ID in iupac2meme.
  • Added documentation for meme2images script.