priority2meme

Usage: priority2meme [options] <matrix file>

Description:

Convert a PRIORITY file into a MEME version 3 formatted file suitable for use with MAST and other MEME Suite programs.

Input:

A PRIORITY file describes a motif in terms of a position weight matrix. A file with background frequencies in MEME background file format is also required.

A log-odds matrix and a probability matrix are output for the motif. The probability matrix is computed using pseudo-counts consisting of the background frequency (see -bg, below) multiplied by the total pseudocounts (see -pseudo, below). The log-odds matrix uses the background frequencies in the denominator and is log base 2.

Options:

Output:

Writes MEME format to standard output.