span.example {
  display: inline-block;
  padding: 0px 3px;
  background: #DDD;
  border: 1px solid #666;
}
/* motif input rules */

.pop_logo {
  position:absolute;
  z-index:1;
  top:0px;
  left:0px;
  /* normally hide */
  display: none;
}

/* show when the mouse is over the textarea and a logo exists to show */
.pop_logo.mouseover.logo_exists {
  display: block;
}

div.motif_input > select.motif_text_alphabet, 
div.motif_input > span.motif_text_alphabet_file,
div.motif_input > div.motif_text,
div.motif_input > span.motif_file, 
div.motif_input > span.motif_embed,
div.motif_input > div.motif_db,
div.motif_input > div.motif_filter {
  /* hide until active */
  display: none;
}

div.motif_input.text > select.motif_text_alphabet {
  display: inline;
}

div.motif_input.text.custom > span.motif_text_alphabet_file {
  display: inline-block;
}

div.motif_input.text > div.motif_text {
  display: block;
}

div.motif_input.file > span.motif_file {
  display: inline-block;
}

div.motif_input.embed > span.motif_embed{
  display: block;
  width: 300px;
}

div.motif_input.file > div.motif_filter {
  display: block;
}

div.motif_input.embed > div.motif_embed {
  display: block;
}

div.motif_input.db > div.motif_db {
  display: block;
}

div.motif_input.text > select.motif_source, div.motif_input.file > select.motif_source {
  max-width: 10em;
}

/* until we have validation on motif inputs like the fasta_debug this 2px margin
 * makes the fields look similar */

div.motif_input > select.motif_source {
  margin: 2px;
}

div.motif_input > select.motif_text_alphabet {
  margin: 2px;
}

div.motif_input > div.motif_db > select.listing {
  margin: 2px;
}

/* motif editor rules */
div.motif_input div.motif_text {
  margin: 2px;
  overflow-y: auto;
  border: 1px solid #999;
  border-radius: 4px;
  width: 400px;
  max-height: 300px;
  /* hide until active */
  background: #E4ECEC;
}
div.motif_input div.motif_text > div {
  position: relative;
  display: inline-block;
  min-width: 100%;
  background: #E4ECEC;
}
div.motif_input div.motif_text > div > textarea, div.motif_input > div.motif_text > div > pre {
  margin: 0;
  outline: 0;
  border: 0;
  padding: 5px 10px;
  padding-bottom: 13px;
  background: transparent;
  font: 400 13px/16px monospace;
  /* turn off wrap as it doesn't make sense for motifs */
  white-space: pre;
  word-wrap: normal;
}
div.motif_input.caseinsensitive div.motif_text > div > textarea, div.motif_input.caseinsensitive > div.motif_text > div > pre {
  /* Sadly this feature means that the IDs are also uppercased hence why it is disabled */
  /* text-transform: uppercase; */
}
div.motif_input div.motif_text > div > textarea {
  /* The border-box box model is used to allow
   * padding whilst still keeping the overall width
   * at exactly that of the containing element.
   */
  -webkit-box-sizing: border-box;
     -moz-box-sizing: border-box;
      -ms-box-sizing: border-box;
          box-sizing: border-box;
  width: 100%;
  /* Hide any scrollbars */
  overflow: hidden;
  position: absolute;
  top: 0;
  left: 0;
  height: 100%;
  /* Remove WebKit user-resize widget */
  resize: none;
}
div.motif_input div.motif_text > div > pre {
  display: block;
  /* Hide the text; just using it for sizing */
  color: rgba(0, 255, 0, 0);
}
/*
 * this box surrounds a motif, unfortunately we can't give it a border directly
 * as it will throw off the layout of the hidden pre
 */
div.motif_input div.motif_text > div > pre div.motif_box {
  position: relative;
  margin: 0;
  outline: 0;
  border: 0;
  padding: 0;
  display: inline-block;
}

div.motif_input div.motif_text > div > pre div.motif_box > div.motif_bracket_left {
  position: absolute;
  top: 3px;
  padding: 1px;
  left: -6px;
  width: 3px;
  height: calc(100% - 6px);
  border: 1px solid #008F8F;
  border-right-style: none;
}

div.motif_input div.motif_text > div > pre div.motif_box > div.motif_bracket_right {
  position: absolute;
  top: 3px;
  padding: 1px;
  right: -10px;
  width: 3px;
  height: calc(100% - 6px);
  border: 1px solid #008F8F;
  border-left-style: none;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token {
  position: relative;
  margin: 0;
  outline: 0;
  border: 0;
  padding: 0;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token.error {
  background: red;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token.warn {
  background: yellow;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token > div.indicator {
  position: absolute;
  font-size: 8px;
  color: red;
  font-family: sans-serif;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token > div.indicator.east {
  top: 0;
  left: 100%;
  margin-left: 11px;
}

div.motif_input div.motif_text > div > pre div.motif_box span.token > div.indicator.south {
  top: 100%;
  margin-top: -5px;
  right: 0;
}
.motif_debug {
  /* note that this must be block or inline block */
  position: relative;
  padding: 2px;
}

.motif_debug span.background {
  position: absolute;
  left: 0;
  top: 0;
  height: 100%;
  width: 100%;
  z-index: -2;
}

.motif_debug span.indicator {
  position: absolute;
  left: 0;
  top: 0;
  height: 100%;
  width: 0%;
  z-index: -1;
  transition: background-color 0.5s;
  -moz-transition: background-color 0.5s; /* Firefox 4 */
  -webkit-transition: background-color 0.5s; /* Safari and Chrome */
  -o-transition: background-color 0.5s; /* Opera */
}

.motif_debug input[type="file"] {
  transition: background-color 0.5s;
  -moz-transition: background-color 0.5s; /* Firefox 4 */
  -webkit-transition: background-color 0.5s; /* Safari and Chrome */
  -o-transition: background-color 0.5s; /* Opera */
}

.motif_debug.good input[type="file"],
.motif_debug.warning input[type="file"],
.motif_debug.error input[type="file"] {
  background-color: transparent;
}

.motif_debug.motif_embed input[type="text"] {
  font-size: 11px;
  width: 300px;
  height: 18px;
}

.motif_debug.motif_embed.good input[type="text"],
.motif_debug.motif_embed.warning input[type="text"],
.motif_debug.motif_embed.error input[type="text"] {
  border: none;
  background-color: transparent;
}

.motif_debug.good span.indicator {
  background-color: #00c800;
}

.motif_debug.warning span.indicator {
  background-color: #d1bf00;
}

.motif_debug.error span.indicator {
  background-color: #d00a00;
}

.motif_debug.good span.background {
  background-color: #d9ecd9;
}

.motif_debug.warning span.background {
  background-color: #EEE8AA; /*#eeecd6;*/
}

.motif_debug.error span.background {
  background-color:  #FFC4C1;/*#ffeceb;*/
}

.motif_debug div.popup {
  display: none;
  position: absolute;
  z-index: 1;
  left: 0;
  top: 100%;
  width: 500px;
  padding: 5px;
  border-style: double;
  border-width: 3px;
}

.motif_debug.warning:hover div.popup {
  display: block;
  background-color: #EEE8AA;
}

.motif_debug.error:hover div.popup {
  display: block;
  background-color: #FFE4E1;
  border-color: #AA2244;
}

.motif_debug div.popup table td {
  vertical-align: top;
}

.motif_debug div.popup table td ul {
  margin-top: 0;
  margin-bottom: 0;
}

/* the little indicator that shows the alphabet name */
div.alph_info {
  position: relative;
  display: inline-block;
}

div.alph_name {
  position: relative;
  display: inline-block;
  font-variant: small-caps;
  font-weight: bold;
  padding: 2px;
  color: DarkGreen;
  border: 1px solid DarkGreen;
  vertical-align: middle;
  cursor: default;
  font-size: x-small;
  white-space: nowrap;
  max-width: 5em;
  overflow: hidden;
  text-overflow: ellipsis;
}

div.alph_info div.popup {
  display: none;
  position: absolute;
  z-index: 1;
  left: 50%;
  top: 100%;
  transform: translateX(-50%);
  max-height: 300px;
  overflow-x: hidden;
  overflow-y: auto;
  padding: 5px;
  padding-right: 20px;
  border-style: double;
  border-width: 3px;
  background: white;
}

div.alph_info:hover div.popup {
  display: block;
}

div.alph_info div.popup h4 {
  padding-top: 0;
  margin-top: 0;
  text-align: center;
  text-decoration: underline;
}

div.motif_input.text:not(.custom) div.alph_info {
  /*display: none;*/
}