********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.5.6 (Release date: Wed Jun 19 13:59:04 2024 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.222 C 0.278 G 0.278 T 0.222 

MOTIF 1-CCASYAGRGGGCGCY STREME-1
letter-probability matrix: alength= 4 w= 15 nsites= 170 E= 8.1e-004
 0.063349 0.890298 0.000230 0.046122
 0.000184 0.999402 0.000230 0.000184
 0.666298 0.046169 0.195473 0.092061
 0.034638 0.597439 0.367740 0.000184
 0.092063 0.448135 0.109336 0.350466
 0.907476 0.000230 0.000230 0.092063
 0.000184 0.000230 0.999402 0.000184
 0.448085 0.011715 0.540016 0.000184
 0.000184 0.000230 0.712287 0.287299
 0.000184 0.005973 0.993660 0.000184
 0.000184 0.046171 0.901779 0.051867
 0.172453 0.712287 0.005973 0.109287
 0.298785 0.074880 0.626151 0.000184
 0.115030 0.603181 0.247151 0.034638
 0.160968 0.379222 0.115079 0.344731

MOTIF 2-GCTGAGTCATN STREME-2
letter-probability matrix: alength= 4 w= 11 nsites= 181 E= 8.5e-004
 0.016567 0.020590 0.928765 0.034078
 0.157305 0.767699 0.047690 0.027306
 0.013760 0.000272 0.000272 0.985697
 0.000217 0.007042 0.978984 0.013757
 0.972151 0.000272 0.007042 0.020536
 0.027301 0.217058 0.755425 0.000217
 0.000217 0.000272 0.000272 0.999240
 0.003026 0.996486 0.000272 0.000217
 0.999240 0.000272 0.000272 0.000217
 0.020530 0.185988 0.103186 0.690296
 0.218358 0.290512 0.318782 0.172349

MOTIF 3-GCGCATGCGCAC STREME-3
letter-probability matrix: alength= 4 w= 12 nsites= 82 E= 1.4e-002
 0.094025 0.000625 0.889266 0.016084
 0.062843 0.889272 0.047387 0.000499
 0.016084 0.000625 0.982792 0.000499
 0.000499 0.967206 0.016210 0.016084
 0.795572 0.109769 0.094160 0.000499
 0.031669 0.203319 0.047387 0.717625
 0.000499 0.016210 0.982792 0.000499
 0.000499 0.936030 0.000625 0.062846
 0.016084 0.016213 0.951618 0.016084
 0.000499 0.951615 0.000625 0.047260
 0.764393 0.047396 0.187713 0.000499
 0.140783 0.608640 0.203322 0.047254

MOTIF 4-CACTTCCTGKT STREME-4
letter-probability matrix: alength= 4 w= 11 nsites= 87 E= 4.3e-002
 0.155575 0.579884 0.145498 0.119043
 0.998521 0.000529 0.000529 0.000422
 0.000422 0.998627 0.000529 0.000422
 0.026785 0.000529 0.000529 0.972157
 0.000422 0.000529 0.000529 0.998521
 0.026780 0.972269 0.000529 0.000422
 0.000422 0.998627 0.000529 0.000422
 0.000422 0.013708 0.211416 0.774454
 0.119033 0.099503 0.781042 0.000422
 0.167523 0.054813 0.295981 0.481683
 0.184946 0.199818 0.182858 0.432378

MOTIF 5-AGATAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 289 E= 5.0e-002
 0.938337 0.022526 0.009024 0.030113
 0.097030 0.021313 0.846658 0.034999
 0.995108 0.001520 0.001795 0.001576
 0.000278 0.005741 0.038524 0.955457
 0.949772 0.001293 0.028184 0.020752
 0.949294 0.017704 0.031024 0.001978
 0.137158 0.028070 0.828203 0.006570
 0.113510 0.177531 0.673227 0.035732

MOTIF 6-CCCCGCCCCCD STREME-6
letter-probability matrix: alength= 4 w= 11 nsites= 310 E= 7.3e-002
 0.110569 0.649744 0.019444 0.220242
 0.001449 0.848549 0.075693 0.074309
 0.040983 0.945579 0.000175 0.013262
 0.075352 0.919959 0.004550 0.000140
 0.139824 0.000175 0.766830 0.093170
 0.070126 0.929559 0.000175 0.000140
 0.000140 0.995170 0.000175 0.004514
 0.000140 0.786880 0.024412 0.188568
 0.049250 0.929940 0.001357 0.019453
 0.013066 0.764956 0.142984 0.078993
 0.228033 0.133146 0.307248 0.331573

MOTIF 7-CAAGATGGC STREME-7
letter-probability matrix: alength= 4 w= 9 nsites= 58 E= 1.8e+000
 0.000703 0.865748 0.132845 0.000703
 0.953579 0.000882 0.000882 0.044658
 0.997533 0.000882 0.000882 0.000703
 0.125649 0.000882 0.850794 0.022676
 0.997533 0.000882 0.000882 0.000703
 0.000703 0.066825 0.144837 0.787634
 0.000703 0.000882 0.975739 0.022676
 0.022676 0.053975 0.856702 0.066647
 0.000703 0.960829 0.000882 0.037586

MOTIF 8-GGTCACGTGABBS STREME-8
letter-probability matrix: alength= 4 w= 13 nsites= 59 E= 2.7e+000
 0.000491 0.046667 0.798848 0.153994
 0.046542 0.108068 0.844899 0.000491
 0.031192 0.108068 0.015966 0.844774
 0.000491 0.768135 0.230882 0.000491
 0.998277 0.000616 0.000616 0.000491
 0.000491 0.921650 0.000616 0.077243
 0.000491 0.000616 0.998401 0.000491
 0.000491 0.000616 0.000616 0.998277
 0.000491 0.230882 0.768135 0.000491
 0.768023 0.015966 0.184819 0.031192
 0.015842 0.430429 0.246220 0.307509
 0.092599 0.230882 0.430424 0.246096
 0.138644 0.415085 0.307621 0.138650

********************************************************************************
Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
********************************************************************************
COMMAND:	streme --verbosity 1 --oc xstreme_example_output_files/streme_out -dna --minw 6 --maxw 15 --order 2 --bfile xstreme_example_output_files/background --seed 0 --align center --evalue --thresh 0.05 --p nrmix.nseqs.100.100bp.seed.1.fa
********************************************************************************
CPU:		Timothys-iMac.local
********************************************************************************
FINALTIME:	30.34 seconds
********************************************************************************