The MEME Suite

Motif-based sequence analysis tools

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Notice

As of 6PM April 26 PDT the backlog of jobs on the MEME Suite server has been cleared, and we have re-enabled submission of new jobs. Please be respectful in your use of this shared resource. As before the server will limit you to submitting 4 jobs in six hours. We'd ask that, for the time being, you limit yourself to 10 or so jobs per day.

Keep an eye on the job queue monitor near the top of the tool bar on the left of each page. When you see the count of waiting jobs exceeds 100 it may be several hours before any new job reaches the top of the queue. Resubmitting jobs will just stress the system further.

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MEME Multiple Em for Motif Elicitation	SEA Simple Enrichment Analysis	FIMO Find Individual Motif Occurrences
STREME Sensitive, Thorough, Rapid, Enriched Motif Elicitation	AME Analysis of Motif Enrichment	MAST Motif Alignment & Search Tool
XSTREME Motif Discovery and Enrichment Analysis	CentriMo Local Motif Enrichment Analysis	MCAST Motif Cluster Alignment and Search Tool
MEME-ChIP Motif Analysis of Large Nucleotide Datasets	SpaMo Spaced Motif Analysis Tool	GLAM2Scan Scanning with Gapped Motifs
GLAM2 Gapped Local Alignment of Motifs	GOMo Gene Ontology for Motifs	T-Gene Predicting Target Genes
MoMo Modification Motifs	Tomtom Motif Comparison Tool	GT-Scan Identifying Unique Genomic Targets
BED2FASTA Convert BED file to FASTA	DREME Discriminative Regular Expression Motif Elicitation

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Development of the MEME Suite was funded by grant R01 GM103544 from the National Institutes of Health.

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Developed and maintained by

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