Select an available sequence database from this menu.
Select an available version of the sequence database from this menu.
Select an available tissue/cell-specificity from this menu.
Selecting this option will filter the sequence menu to only contain databases that have additional information that is specific to a tissue or cell line.
This option causes MEME Suite to use tissue/cell-specific information (typically from DNase I or histone modification ChIP-seq data) encoded as a position specific prior that has been created by the MEME Suite create-priors utility. You can see a description of the sequence databases for which we provide tissue/cell-specific priors here.
Note that you cannot upload or type in your own sequences when tissue/cell-specific scanning is selected.
Enter text naming or describing this analysis. The job description will be included in the notification email you receive and in the job output.
List of peptides with modifications. These can be in three formats:
prealigned: List of fixed width peptides centered around modification site separated by new lines.
fasta: List of fixed width peptides centered around modification site in FASTA format.
Protein database to use for flanking information and background sequences in FASTA format.
Minimum occurrences of modification required to output a motif. This threshold is applied after filter and eliminate repeats (if applicable).
Create one motif per mass instead of one motif per mass and central peptide.
Remove duplicate copies of modifications with identical flanking sequences for a user specified width.
Filter PSMs using for a field specified within the uploaded file.
Choose the algorithm used for searching motifs.