MEME Suite 4.10.0 Patches

This file gives notes and installation instructions for patches of the MEME Suite version 4.10.0. For new installations you can skip the patching steps by using the pre-patched distribution.

The patches should always be installed in order because later patches may depend on changes made in earlier patches.

PatchNotesDownload
1 notes download
2 notes download
3 notes download
4 notes download

If you're patching a completely unpatched MEME install then all the patches can be installed by:

  1. Downloading all the patch files (linked above) to the root of the MEME Suite source distribution
  2. Changing your working directory to the root of the MEME Suite source distribution
  3. Running the command
  4. If nothing went wrong then install the changes with the command

Please refer to the installation instructions included with the distribution in the file doc/install.html.

Contact meme@sdsc.edu if you run into problems.


Patch 1

Download

This patch fixes the following:

To apply this patch, download the patch file to the root of the MEME Suite source distribution, change your working directory to the root of the MEME Suite source distribution and run the command:

You should see the following message:

Now run:

This will copy the change from the source directory to the installed version of the MEME Suite.

Contact meme@sdsc.edu if you run into problems.


Patch 2

Download

This patch fixes the following:

To apply this patch, download the patch file to the root of the MEME Suite source distribution, change your working directory to the root of the MEME Suite source distribution and run the command:

You should see the following message:

Now run:

This will copy the change from the source directory to the installed version of the MEME Suite.

Contact meme@sdsc.edu if you run into problems.


Patch 3

Download

This patch fixes the following:

To apply this patch, download the patch file to the root of the MEME Suite source distribution, change your working directory to the root of the MEME Suite source distribution and run the command:

You should see the following message:

Now run:

This will copy the change from the source directory to the installed version of the MEME Suite.

Contact meme@sdsc.edu if you run into problems.


Patch 4

Download

This patch fixes the following:

To apply this patch, download the patch file to the root of the MEME Suite source distribution, change your working directory to the root of the MEME Suite source distribution and run the command:

You should see the following message:

Now run:

This will copy the change from the source directory to the installed version of the MEME Suite.

Note if you have already used a previous version of the sequence updater you should delete all the protein background files (matching the pattern "*.faa.bfile") it generated and rerun the updater to regenerate the files properly. As long as the associated sequence files remain it will not need to redownload them.

Contact meme@sdsc.edu if you run into problems.